IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.32   STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
676	 61.14	0	673309..673887	-	192	148239012	-	SynWH7803_0676	-	xanthosine triphosphate pyrophosphatase
677	 64.74	0	674177..674488	+	103	148239013	csoS1/ccmK1	SynWH7803_0677	-	carboxysome shell peptide
678	 61.30	0	674560..675975	+	471	148239014	rbcL	SynWH7803_0678	-	ribulose bisophosphate carboxylase
679	 59.06	0	676035..676376	+	113	148239015	-	SynWH7803_0679	-	ribulose bisphosphate carboxylase small subunit
680	 64.23	0	676478..678817	+	779	148239016	csoS2	SynWH7803_0680	-	carboxysome shell polypeptide, CsoS2
681	 55.75	0	678825..680573	+	582	148239017	csoS3	SynWH7803_0681	-	carboxysome shell polypeptide, CsoS3
682	 58.26	0	680576..680920	+	114	148239018	-	SynWH7803_0682	-	carboxysome peptide A
683	 58.33	0	680920..681171	+	83	148239019	-	SynWH7803_0683	-	carboxysome peptide B
684	 64.31	0	681305..681856	+	183	148239020	csoS1/ccmK2	SynWH7803_0684	-	carboxysome shell peptide, CsoS1
685	 53.12	-1	681938..683782	+	614	148239021	ndhF	SynWH7803_0685	-	NAD(P)H-quinone oxidoreductase subunit F
686	 54.07	-1	683790..685289	+	499	148239022	ndhD	SynWH7803_0686	-	NAD(P)H-quinone oxidoreductase chain 4
687	 52.09	-1	685286..686431	+	381	148239023	chpX	SynWH7803_0687	-	CO2 hydration protein ChpX
688	 50.00	-2	686459..686710	+	83	148239024	-	SynWH7803_0688	-	pterin-4 alpha-carbinolamine dehydratase-like protein
689	 52.16	-1	686694..687617	+	307	148239025	cbbX	SynWH7803_0689	-	CbbX protein
690	 58.33	0	687627..687854	-	75	148239026	-	SynWH7803_0690	-	hypothetical protein
691	 60.40	0	687897..688391	-	164	148239027	-	SynWH7803_0691	-	hypothetical protein
692	 59.90	0	688498..688896	-	132	148239028	-	SynWH7803_0692	-	putative translation initiation inhibitor
693	 61.18	0	688895..690025	+	376	148239029	-	SynWH7803_0693	-	ABC transporter, ATPase component
694	 60.68	0	690000..690767	-	255	148239030	gloB	SynWH7803_0694	-	hydroxyacylglutathione hydrolase
695	 57.80	0	690797..691450	+	217	148239031	hisG	SynWH7803_0695	-	ATP phosphoribosyltransferase catalytic subunit
696	 58.69	0	691450..693279	+	609	148239032	-	SynWH7803_0696	-	ABC-type multidrug transport system ATPase and permease components
697	 62.70	0	693252..694007	-	251	148239033	-	SynWH7803_0697	-	alpha/beta fold family hydrolase
698	 62.30	0	694087..694590	+	167	148239034	-	SynWH7803_0698	-	acetyltransferase
699	 61.97	0	694587..695288	-	233	148239035	-	SynWH7803_0699	-	glycosyl transferase family protein
700	 63.55	0	695285..695926	-	213	148239036	-	SynWH7803_0700	-	hypothetical protein
701	 61.99	0	695923..697077	-	384	148239037	-	SynWH7803_0701	-	Serine protease
702	 59.07	0	697164..698558	+	464	148239038	dnaA	SynWH7803_0702	-	chromosomal replication initiation protein
703	 61.17	0	698555..699118	-	187	148239039	-	SynWH7803_0703	-	hypothetical protein
704	 58.48	0	699253..699777	-	174	148239040	-	SynWH7803_0704	-	hypothetical protein
705	 58.85	0	699784..700026	-	80	148239041	-	SynWH7803_0705	-	hypothetical protein
706	 62.78	0	700175..701536	+	453	148239042	gor	SynWH7803_0706	-	glutathione reductase
707	 60.34	0	701624..702145	+	173	148239043	-	SynWH7803_0707	-	biopolymer transport protein
708	 66.11	+1	702328..702507	+	59	148239044	-	SynWH7803_0708	-	hypothetical protein
709	 61.94	0	702504..702863	+	119	148239045	-	SynWH7803_0709	-	hypothetical protein
710	 62.17	0	702826..703470	+	214	148239046	-	SynWH7803_0710	-	hypothetical protein
711	 57.32	0	703536..704006	+	156	148239047	-	SynWH7803_0711	-	hypothetical protein
712	 60.36	0	704003..705523	-	506	148239048	-	SynWH7803_0712	-	flavoprotein related to choline dehydrogenase
713	 49.67	-2	705563..706168	-	201	148239049	-	SynWH7803_0713	-	cytochrome c oxidase subunit III
714	 55.60	0	706172..707860	-	562	148239050	-	SynWH7803_0714	-	cytochrome c oxidase subunit I
715	 55.56	0	707866..708801	-	311	148239051	-	SynWH7803_0715	-	cytochrome c oxidase subunit II
716	 56.29	0	708798..709433	-	211	148239052	-	SynWH7803_0716	-	hypothetical protein
717	 55.49	0	709430..709930	-	166	148239053	-	SynWH7803_0717	-	hypothetical protein
718	 60.05	0	710045..711163	-	372	148239054	-	SynWH7803_0718	-	Ca2+/Na+ antiporter
719	 58.74	0	711266..712942	+	558	148239055	-	SynWH7803_0719	-	MFS superfamily sulfate permease
720	 58.24	0	712946..714037	+	363	148239056	pyrC	SynWH7803_0720	-	dihydroorotase
721	 57.79	0	714069..714530	+	153	148239057	-	SynWH7803_0721	-	hypothetical protein
722	 57.08	0	714620..715495	+	291	148239058	-	SynWH7803_0722	-	gluconolactonase
723	 54.41	-1	715512..715772	+	86	148239059	-	SynWH7803_0723	-	hypothetical protein
724	 63.95	0	715777..716217	+	146	148239060	-	SynWH7803_0724	-	hypothetical protein
725	 57.66	0	716192..716968	-	258	148239061	gdh	SynWH7803_0725	-	glucose 1-dehydrogenase
726	 60.25	0	717132..717941	+	269	148239062	-	SynWH7803_0726	-	hypothetical protein
727	 57.93	0	718060..718494	+	144	148239063	-	SynWH7803_0727	-	hypothetical protein
728	 57.85	0	718495..720093	-	532	148239064	-	SynWH7803_0728	-	flavoprotein related to choline dehydrogenase
729	 58.55	0	720182..722878	-	898	148239065	-	SynWH7803_0729	-	hypothetical protein
730	 55.69	0	723112..723357	+	81	148239066	ictA	SynWH7803_0730	-	inorganic carbon transport protein, IctA
731	 58.11	0	723377..723715	+	112	148239067	-	SynWH7803_0731	-	hypothetical protein
732	 58.08	0	723747..724550	+	267	148239068	trpA	SynWH7803_0732	-	tryptophan synthase subunit alpha
733	 55.65	0	724554..724925	-	123	148239069	-	SynWH7803_0733	-	hypothetical protein
734	 53.70	-1	725020..725289	+	89	148239070	-	SynWH7803_0734	-	YciI-like protein
735	 57.66	0	725265..725597	-	110	148239071	petJ	SynWH7803_0735	-	cytochrome C6
736	 55.28	-1	725621..725866	-	81	148239072	-	SynWH7803_0736	-	hypothetical protein
737	 59.96	0	725952..726518	+	188	148239073	-	SynWH7803_0737	-	hypothetical protein
738	 56.33	0	726376..726936	-	186	148239074	-	SynWH7803_0738	-	hypothetical protein
739	 60.00	0	726942..727196	-	84	148239075	-	SynWH7803_0739	-	hypothetical protein
740	 64.64	0	727238..727582	-	114	148239076	-	SynWH7803_0740	-	hypothetical protein
741	 61.78	0	727579..727926	-	115	148239077	-	SynWH7803_0741	-	hypothetical protein
742	 56.63	0	728021..728947	-	308	148239078	rpoD	SynWH7803_0742	-	RNA polymerase sigma factor, sigma-70 family
743	 60.98	0	729195..729686	+	163	148239079	-	SynWH7803_0743	-	hypothetical protein
744	 67.43	+1	729699..730355	+	218	148239080	-	SynWH7803_0744	-	Zn-dependent protease
745	 61.65	0	730486..731163	+	225	148239081	-	SynWH7803_0745	-	hypothetical protein
746	 63.44	0	731160..731840	-	226	148239082	hisIE	SynWH7803_0746	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
747	 62.08	0	731909..732409	+	166	148239083	-	SynWH7803_0747	-	6-pyruvoyl tetrahydropterin synthase
748	 62.38	0	732369..734537	-	722	148239084	clpB	SynWH7803_0748	-	chaperone ClpB
749	 62.58	0	734497..734985	-	162	148239085	-	SynWH7803_0749	-	endopeptidase Clp ATP-binding chain B
750	 62.04	0	735127..735342	+	71	148239086	-	SynWH7803_0750	-	hypothetical protein
751	 56.72	0	735347..735547	-	66	148239087	-	SynWH7803_0751	-	hypothetical protein
752	 59.78	0	735544..735906	-	120	148239088	petJ	SynWH7803_0752	-	cytochrome C6
753	 57.78	0	736040..736399	-	119	148239089	petE	SynWH7803_0753	-	plastocyanin
754	 61.73	0	736434..737426	-	330	148239090	-	SynWH7803_0754	-	nucleoside-diphosphate-sugar epimerase
755	 62.13	0	737437..738495	-	352	148239091	hemE	SynWH7803_0755	-	uroporphyrinogen decarboxylase
756	 58.44	0	738615..740900	-	761	148239092	-	SynWH7803_0756	-	glycogen branching enzyme
757	 60.98	0	740979..741734	-	251	148239093	-	SynWH7803_0757	-	hypothetical protein
758	 63.55	0	741749..743353	-	534	148239094	-	SynWH7803_0758	-	acyl esterase
759	 62.20	0	743343..743588	-	81	148239095	-	SynWH7803_0759	-	hypothetical protein
760	 63.95	0	743709..744113	-	134	148239096	-	SynWH7803_0760	-	hypothetical protein
761	 64.41	0	744110..744553	-	147	148239097	-	SynWH7803_0761	-	hypothetical protein
762	 63.82	0	744618..749048	+	1476	148239098	-	SynWH7803_0762	-	hypothetical protein
763	 65.66	+1	749052..749942	+	296	148239099	-	SynWH7803_0763	-	ROK family protein
764	 64.30	0	750013..751320	+	435	148239100	proA	SynWH7803_0764	-	gamma-glutamyl phosphate reductase
765	 59.23	0	751320..751709	+	129	148239101	folB	SynWH7803_0765	-	dihydroneopterin aldolase
766	 60.71	0	751711..752331	+	206	148239102	-	SynWH7803_0766	-	lipase family protein
767	 54.31	-1	752400..753095	+	231	148239103	-	SynWH7803_0767	-	hypothetical protein
768	 58.65	0	753103..753651	+	182	148239104	-	SynWH7803_0768	-	hypothetical protein
769	 57.99	0	753651..754745	+	364	148239105	-	SynWH7803_0769	-	hypothetical protein
770	 61.35	0	754735..756201	-	488	148239106	-	SynWH7803_0770	-	hypothetical protein
771	 62.32	0	756222..758339	-	705	148239107	prlC	SynWH7803_0771	-	oligopeptidase A
772	 59.92	0	758346..759917	-	523	148239108	ndhD	SynWH7803_0772	-	NAD(P)H-quinone oxidoreductase subunit 4
773	 64.45	0	759974..760921	-	315	148239109	thrB	SynWH7803_0773	-	homoserine kinase
774	 64.07	0	760936..762012	-	358	148239110	glk	SynWH7803_0774	-	glucokinase
775	 64.05	0	762102..762521	-	139	148239111	-	SynWH7803_0775	-	hypothetical protein
60.32	MEAN

4.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.