IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
630	 60.72	0	630742..632070	-	442	148238966	gmpB	SynWH7803_0630	-	phosphoglycerate mutase
631	 63.26	0	632229..633548	+	439	148238967	-	SynWH7803_0631	-	metal-dependent membrane protease
632	 64.69	0	633632..634087	+	151	148238968	-	SynWH7803_0632	-	hypothetical protein
633	 61.57	0	634091..635896	+	601	148238969	ftsI	SynWH7803_0633	-	peptidoglycan synthetase
634	 56.44	0	635988..637160	+	390	148238970	tal	SynWH7803_0634	-	transaldolase/EF-hand domain-containing protein
635	 57.11	0	637228..637614	+	128	148238971	-	SynWH7803_0635	-	cAMP-binding protein
636	 61.44	0	637663..639135	+	490	148238972	phr	SynWH7803_0636	-	deoxyribodipyrimidine photolyase
637	 64.75	0	639132..640277	-	381	148238973	-	SynWH7803_0637	-	dehydrogenase
638	 57.38	0	640274..640822	-	182	148238974	frr	SynWH7803_0638	-	ribosome recycling factor
639	 59.60	0	640831..641538	-	235	148238975	pyrH	SynWH7803_0639	-	uridylate kinase
640	 61.83	0	641641..641826	+	61	148238976	-	SynWH7803_0640	-	hypothetical protein
641	 59.76	0	641830..642495	-	221	148238977	cobO	SynWH7803_0641	-	Cob(I)alamin adenosyltransferase
642	 62.81	0	642492..643139	-	215	148238978	-	SynWH7803_0642	-	SAM-dependent methyltransferase
643	 63.20	0	643154..644308	-	384	148238979	-	SynWH7803_0643	-	Phage integrase family protein
644	 57.99	0	644381..645556	+	391	148238980	hemH	SynWH7803_0644	-	ferrochelatase
645	 61.49	0	645639..647492	+	617	148238981	ilvB	SynWH7803_0645	-	acetolactate synthase 3 catalytic subunit
646	 61.62	0	647492..647848	+	118	148238982	-	SynWH7803_0646	-	nuclease
647	 61.40	0	647850..648077	+	75	148238983	-	SynWH7803_0647	-	hypothetical protein
648	 61.97	0	648112..649368	+	418	148238984	-	SynWH7803_0648	-	hypothetical protein
649	 62.14	0	649403..651058	+	551	148238985	-	SynWH7803_0649	-	hypothetical protein
650	 61.94	0	651083..651907	-	274	148238986	-	SynWH7803_0650	-	hypothetical protein
651	 63.28	0	651910..652824	-	304	148238987	-	SynWH7803_0651	-	hypothetical protein
652	 61.06	0	652821..654032	-	403	148238988	rpsA	SynWH7803_0652	-	30S ribosomal protein S1
653	 62.53	0	654165..655010	+	281	148238989	-	SynWH7803_0653	-	creatininase
654	 55.60	0	655060..655791	+	243	148238990	-	SynWH7803_0654	-	Ferritin-like, diiron-carboxylate protein
655	 57.54	0	655930..656970	+	346	148238991	-	SynWH7803_0655	-	dehydrogenase
656	 60.10	0	656991..657980	+	329	148238992	accA	SynWH7803_0656	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
657	 60.59	0	658005..658712	+	235	148238993	-	SynWH7803_0657	-	short chain dehydrogenase
658	 55.20	-1	658725..659483	+	252	148238994	folE	SynWH7803_0658	-	GTP cyclohydrolase I
659	 55.62	0	659515..660021	-	168	148238995	-	SynWH7803_0659	-	hypothetical protein
660	 60.77	0	660034..660711	-	225	148238996	trpF	SynWH7803_0660	-	phosphoribosylanthranilate isomerase
661	 59.21	0	660775..662034	+	419	148238997	-	SynWH7803_0661	-	Zn-dependent membrane associated protease
662	 63.41	0	662031..662798	-	255	148238998	lplA	SynWH7803_0662	-	lipoate-protein ligase A
663	 63.59	0	662797..663576	+	259	148238999	-	SynWH7803_0663	-	hypothetical protein
664	 57.17	0	663579..664568	-	329	148239000	-	SynWH7803_0664	-	hypothetical protein
665	 63.07	0	664674..665285	-	203	148239001	-	SynWH7803_0665	-	hypothetical protein
666	 63.27	0	665282..665782	-	166	148239002	-	SynWH7803_0666	-	hypothetical protein
667	 60.00	0	665861..665965	+	34	148239003	psaM	SynWH7803_0667	-	photosystem I reaction center subunit XII
668	 56.51	0	665987..666370	+	127	148239004	-	SynWH7803_0668	-	hypothetical protein
669	 62.46	0	666439..667389	+	316	148239005	por	SynWH7803_0669	-	protochlorophyllide oxidoreductase
670	 58.59	0	667390..668280	-	296	148239006	chlL	SynWH7803_0670	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
671	 60.20	0	668432..670024	-	530	148239007	chlB	SynWH7803_0671	-	light-independent protochlorophyllide reductase subunit B
672	 62.64	0	670029..671318	-	429	148239008	chlN	SynWH7803_0672	-	light-independent protochlorophyllide reductase subunit N
673	 55.36	-1	671441..671962	+	173	148239009	-	SynWH7803_0673	-	hypothetical protein
674	 61.27	0	672019..672426	-	135	148239010	-	SynWH7803_0674	-	hypothetical protein
675	 59.29	0	672522..673307	+	261	148239011	-	SynWH7803_0675	-	hypothetical protein
676	 61.14	0	673309..673887	-	192	148239012	-	SynWH7803_0676	-	xanthosine triphosphate pyrophosphatase
677	 64.74	0	674177..674488	+	103	148239013	csoS1/ccmK1	SynWH7803_0677	-	carboxysome shell peptide
678	 61.30	0	674560..675975	+	471	148239014	rbcL	SynWH7803_0678	-	ribulose bisophosphate carboxylase
679	 59.06	0	676035..676376	+	113	148239015	-	SynWH7803_0679	-	ribulose bisphosphate carboxylase small subunit
680	 64.23	0	676478..678817	+	779	148239016	csoS2	SynWH7803_0680	-	carboxysome shell polypeptide, CsoS2
681	 55.75	0	678825..680573	+	582	148239017	csoS3	SynWH7803_0681	-	carboxysome shell polypeptide, CsoS3
682	 58.26	0	680576..680920	+	114	148239018	-	SynWH7803_0682	-	carboxysome peptide A
683	 58.33	0	680920..681171	+	83	148239019	-	SynWH7803_0683	-	carboxysome peptide B
684	 64.31	0	681305..681856	+	183	148239020	csoS1/ccmK2	SynWH7803_0684	-	carboxysome shell peptide, CsoS1
685	 53.12	-1	681938..683782	+	614	148239021	ndhF	SynWH7803_0685	-	NAD(P)H-quinone oxidoreductase subunit F
686	 54.07	-1	683790..685289	+	499	148239022	ndhD	SynWH7803_0686	-	NAD(P)H-quinone oxidoreductase chain 4
687	 52.09	-1	685286..686431	+	381	148239023	chpX	SynWH7803_0687	-	CO2 hydration protein ChpX
688	 50.00	-2	686459..686710	+	83	148239024	-	SynWH7803_0688	-	pterin-4 alpha-carbinolamine dehydratase-like protein
689	 52.16	-1	686694..687617	+	307	148239025	cbbX	SynWH7803_0689	-	CbbX protein
690	 58.33	0	687627..687854	-	75	148239026	-	SynWH7803_0690	-	hypothetical protein
691	 60.40	0	687897..688391	-	164	148239027	-	SynWH7803_0691	-	hypothetical protein
692	 59.90	0	688498..688896	-	132	148239028	-	SynWH7803_0692	-	putative translation initiation inhibitor
693	 61.18	0	688895..690025	+	376	148239029	-	SynWH7803_0693	-	ABC transporter, ATPase component
694	 60.68	0	690000..690767	-	255	148239030	gloB	SynWH7803_0694	-	hydroxyacylglutathione hydrolase
695	 57.80	0	690797..691450	+	217	148239031	hisG	SynWH7803_0695	-	ATP phosphoribosyltransferase catalytic subunit
696	 58.69	0	691450..693279	+	609	148239032	-	SynWH7803_0696	-	ABC-type multidrug transport system ATPase and permease components
697	 62.70	0	693252..694007	-	251	148239033	-	SynWH7803_0697	-	alpha/beta fold family hydrolase
698	 62.30	0	694087..694590	+	167	148239034	-	SynWH7803_0698	-	acetyltransferase
699	 61.97	0	694587..695288	-	233	148239035	-	SynWH7803_0699	-	glycosyl transferase family protein
700	 63.55	0	695285..695926	-	213	148239036	-	SynWH7803_0700	-	hypothetical protein
701	 61.99	0	695923..697077	-	384	148239037	-	SynWH7803_0701	-	Serine protease
702	 59.07	0	697164..698558	+	464	148239038	dnaA	SynWH7803_0702	-	chromosomal replication initiation protein
703	 61.17	0	698555..699118	-	187	148239039	-	SynWH7803_0703	-	hypothetical protein
704	 58.48	0	699253..699777	-	174	148239040	-	SynWH7803_0704	-	hypothetical protein
705	 58.85	0	699784..700026	-	80	148239041	-	SynWH7803_0705	-	hypothetical protein
706	 62.78	0	700175..701536	+	453	148239042	gor	SynWH7803_0706	-	glutathione reductase
707	 60.34	0	701624..702145	+	173	148239043	-	SynWH7803_0707	-	biopolymer transport protein
708	 66.11	+1	702328..702507	+	59	148239044	-	SynWH7803_0708	-	hypothetical protein
709	 61.94	0	702504..702863	+	119	148239045	-	SynWH7803_0709	-	hypothetical protein
710	 62.17	0	702826..703470	+	214	148239046	-	SynWH7803_0710	-	hypothetical protein
711	 57.32	0	703536..704006	+	156	148239047	-	SynWH7803_0711	-	hypothetical protein
712	 60.36	0	704003..705523	-	506	148239048	-	SynWH7803_0712	-	flavoprotein related to choline dehydrogenase
713	 49.67	-2	705563..706168	-	201	148239049	-	SynWH7803_0713	-	cytochrome c oxidase subunit III
714	 55.60	0	706172..707860	-	562	148239050	-	SynWH7803_0714	-	cytochrome c oxidase subunit I
715	 55.56	0	707866..708801	-	311	148239051	-	SynWH7803_0715	-	cytochrome c oxidase subunit II
716	 56.29	0	708798..709433	-	211	148239052	-	SynWH7803_0716	-	hypothetical protein
717	 55.49	0	709430..709930	-	166	148239053	-	SynWH7803_0717	-	hypothetical protein
718	 60.05	0	710045..711163	-	372	148239054	-	SynWH7803_0718	-	Ca2+/Na+ antiporter
719	 58.74	0	711266..712942	+	558	148239055	-	SynWH7803_0719	-	MFS superfamily sulfate permease
720	 58.24	0	712946..714037	+	363	148239056	pyrC	SynWH7803_0720	-	dihydroorotase
721	 57.79	0	714069..714530	+	153	148239057	-	SynWH7803_0721	-	hypothetical protein
722	 57.08	0	714620..715495	+	291	148239058	-	SynWH7803_0722	-	gluconolactonase
723	 54.41	-1	715512..715772	+	86	148239059	-	SynWH7803_0723	-	hypothetical protein
724	 63.95	0	715777..716217	+	146	148239060	-	SynWH7803_0724	-	hypothetical protein
725	 57.66	0	716192..716968	-	258	148239061	gdh	SynWH7803_0725	-	glucose 1-dehydrogenase
726	 60.25	0	717132..717941	+	269	148239062	-	SynWH7803_0726	-	hypothetical protein
727	 57.93	0	718060..718494	+	144	148239063	-	SynWH7803_0727	-	hypothetical protein
728	 57.85	0	718495..720093	-	532	148239064	-	SynWH7803_0728	-	flavoprotein related to choline dehydrogenase
729	 58.55	0	720182..722878	-	898	148239065	-	SynWH7803_0729	-	hypothetical protein
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.