IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
548	 62.06	0	552580..554034	+	484	148238884	-	SynWH7803_0548	-	alpha-glucosidase
549	 59.46	0	554257..554700	+	147	148238885	aroQ	SynWH7803_0549	-	3-dehydroquinate dehydratase
550	 58.06	0	554697..555347	+	216	148238886	miaE	SynWH7803_0550	-	tRNA-(MS[2]IO[6]A)-hydroxylase
551	 61.18	0	555917..556153	+	78	148238887	-	SynWH7803_0551	-	hypothetical protein
552	 43.20	-2	556259..556714	-	151	148238888	-	SynWH7803_0552	-	hypothetical protein
553	 48.83	-2	556748..557089	-	113	148238889	-	SynWH7803_0553	-	hypothetical protein
554	 45.69	-2	557139..557567	-	142	148238890	-	SynWH7803_0554	-	hypothetical protein
555	 42.67	-2	557664..558980	-	438	148238891	-	SynWH7803_0555	-	multidrug resistance efflux pump
556	 41.09	-2	558980..561247	-	755	148238892	-	SynWH7803_0556	-	ABC-type multidrug transport system, ATPase and permease components
557	 40.85	-2	561244..563478	-	744	148238893	-	SynWH7803_0557	-	ABC-type multidrug transport system, ATPase and permease components
558	 49.27	-2	563484..565202	-	572	148238894	-	SynWH7803_0558	-	hypothetical protein
559	 48.16	-2	565384..566496	+	370	148238895	-	SynWH7803_0559	-	hypothetical protein
560	 56.35	0	566523..567065	-	180	148238896	-	SynWH7803_0560	-	ARD/ARD' family protein (methionine salvage pathway)
561	 61.71	0	567185..567910	+	241	148238897	cobI	SynWH7803_0561	-	precorrin-2 C20-methyltransferase
562	 63.32	0	567937..568533	+	198	148238898	-	SynWH7803_0562	-	hypothetical protein
563	 63.54	0	568543..570558	-	671	148238899	-	SynWH7803_0563	-	glycosyl transferase family protein
564	 64.31	0	570555..571571	-	338	148238900	dus	SynWH7803_0564	-	tRNA-dihydrouridine synthase
565	 64.09	0	571623..572204	-	193	148238901	-	SynWH7803_0565	-	hypothetical protein
566	 65.81	+1	572284..572751	+	155	148238902	-	SynWH7803_0566	-	hypothetical protein
567	 62.32	0	572755..573168	-	137	148238903	-	SynWH7803_0567	-	hypothetical protein
568	 61.92	0	573290..574657	+	455	148238904	engA	SynWH7803_0568	-	GTP-binding protein EngA
569	 61.76	0	574663..575580	+	305	148238905	cbiQ	SynWH7803_0569	-	cobalt ABC transporter permease
570	 59.55	0	575598..575864	+	88	148238906	-	SynWH7803_0570	-	hypothetical protein
571	 61.29	0	575887..576537	+	216	148238907	-	SynWH7803_0571	-	TIM-barrel fold family protein
572	 61.43	0	576614..577186	+	190	148238908	-	SynWH7803_0572	-	hypothetical protein
573	 62.52	0	577196..578014	+	272	148238909	proC	SynWH7803_0573	-	pyrroline-5-carboxylate reductase
574	 63.17	0	578011..579183	-	390	148238910	-	SynWH7803_0574	-	glycosyl transferase family protein
575	 63.41	0	579211..580593	-	460	148238911	-	SynWH7803_0575	-	major facilitator superfamily permease
576	 69.86	+1	580603..581415	-	270	148238912	recO	SynWH7803_0576	-	DNA repair protein RecO
577	 63.29	0	581412..582092	-	226	148238913	deoC	SynWH7803_0577	-	deoxyribose-phosphate aldolase
578	 61.39	0	582127..582714	-	195	148238914	lrtA	SynWH7803_0578	-	light repressed protein A-like protein
579	 63.43	0	582727..583467	+	246	148238915	lipB	SynWH7803_0579	-	lipoyltransferase
580	 64.56	0	583496..585439	+	647	148238916	fadD	SynWH7803_0580	-	long-chain acyl-CoA synthetase
581	 62.39	0	585511..585954	+	147	148238917	-	SynWH7803_0581	-	hypothetical protein
582	 65.33	+1	586023..587372	+	449	148238918	pdhC	SynWH7803_0582	-	branched-chain alpha-keto acid dehydrogenase subunit E2
583	 61.90	0	587443..589329	+	628	148238919	-	SynWH7803_0583	-	amino acid permease
584	 63.25	0	589366..590478	+	370	148238920	queA	SynWH7803_0584	-	S-adenosylmethionine:tRNA-ribosyltransferase-isom erase
585	 62.01	0	590488..591474	-	328	148238921	cysK	SynWH7803_0585	-	cysteine synthase
586	 63.84	0	591554..593038	-	494	148238922	metB	SynWH7803_0586	-	hypothetical protein
587	 62.44	0	593035..594216	-	393	148238923	-	SynWH7803_0587	-	metC/metB cystathionine beta-lyase/cystathioninegamma-synthase
588	 49.43	-2	594269..594529	+	86	148238924	-	SynWH7803_0588	-	hypothetical protein
589	 46.10	-2	594539..595603	-	354	148238925	-	SynWH7803_0589	-	Fatty acid desaturase
590	 61.46	0	595839..596030	+	63	148238926	-	SynWH7803_0590	-	hypothetical protein
591	 62.40	0	596133..596741	-	202	148238927	rpsD	SynWH7803_0591	-	30S ribosomal protein S4
592	 60.75	0	596772..597092	+	106	148238928	-	SynWH7803_0592	-	hypothetical protein
593	 61.51	0	597114..597404	+	96	148238929	-	SynWH7803_0593	-	thioredoxin family protein
594	 63.27	0	597431..598930	+	499	148238930	murE	SynWH7803_0594	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
595	 61.87	0	598940..599773	-	277	148238931	-	SynWH7803_0595	-	hypothetical protein
596	 63.86	0	599828..601072	-	414	148238932	-	SynWH7803_0596	-	L-cysteine/cystine lyase
597	 54.60	-1	601106..601279	-	57	148238933	-	SynWH7803_0597	-	hypothetical protein
598	 64.46	0	601407..602132	+	241	148238934	-	SynWH7803_0598	-	hypothetical protein
599	 60.39	0	602122..603396	-	424	148238935	-	SynWH7803_0599	-	ABC transporter substrate-binding protein
600	 57.74	0	603393..604535	-	380	148238936	-	SynWH7803_0600	-	hypothetical protein
601	 63.41	0	604581..604826	-	81	148238937	-	SynWH7803_0601	-	NifU-like protein
602	 62.42	0	604912..606393	+	493	148238938	mqoA	SynWH7803_0602	-	malate:quinone oxidoreductase
603	 61.93	0	606382..607035	-	217	148238939	-	SynWH7803_0603	-	hypothetical protein
604	 60.82	0	607120..607461	-	113	148238940	-	SynWH7803_0604	-	small multidrug resistance protein
605	 52.89	-1	607535..608122	+	195	148238941	ppa	SynWH7803_0605	-	inorganic pyrophosphatase
606	 55.62	0	608214..609191	-	325	148238942	-	SynWH7803_0606	-	hypothetical protein
607	 59.61	0	609351..609860	+	169	148238943	-	SynWH7803_0607	-	hypothetical protein
608	 58.61	0	609850..610482	-	210	148238944	-	SynWH7803_0608	-	hypothetical protein
609	 61.77	0	610485..611444	-	319	148238945	hemC	SynWH7803_0609	-	porphobilinogen deaminase
610	 57.84	0	611632..612084	+	150	148238946	-	SynWH7803_0610	-	hypothetical protein
611	 57.13	0	612192..613544	-	450	148238947	rpoD	SynWH7803_0611	-	RNA polymerase sigma factor RpoD
612	 63.78	0	613843..616131	+	762	148238948	priA	SynWH7803_0612	-	primosomal protein N' (replication factor Y)
613	 63.83	0	616134..617225	-	363	148238949	-	SynWH7803_0613	-	hypothetical protein
614	 63.27	0	617229..618110	-	293	148238950	argB	SynWH7803_0614	-	acetylglutamate kinase
615	 61.73	0	618097..618663	-	188	148238951	-	SynWH7803_0615	-	hypothetical protein
616	 60.49	0	618793..618954	+	53	148238952	-	SynWH7803_0616	-	hypothetical protein
617	 64.09	0	618955..619419	-	154	148238953	-	SynWH7803_0617	-	single-stranded DNA-binding protein
618	 64.44	0	619434..620243	+	269	148238954	cobK	SynWH7803_0618	-	precorrin-6x reductase
619	 61.44	0	620240..621253	-	337	148238955	-	SynWH7803_0619	-	ribokinase family sugar kinase
620	 61.04	0	621324..622637	-	437	148238956	purA	SynWH7803_0620	-	adenylosuccinate synthetase
621	 58.69	0	622750..623175	-	141	148238957	psb27	SynWH7803_0621	-	photosystem II protein Psb27
622	 57.93	0	623220..625004	-	594	148238958	proS	SynWH7803_0622	-	prolyl-tRNA synthetase
623	 52.47	-1	625151..625615	+	154	148238959	-	SynWH7803_0623	-	hypothetical protein
624	 57.12	0	625903..626415	+	170	148238960	ppa	SynWH7803_0624	-	inorganic pyrophosphatase
625	 58.33	0	626509..626868	+	119	148238961	-	SynWH7803_0625	-	ferredoxin
626	 56.21	0	626930..627235	+	101	148238962	-	SynWH7803_0626	-	arsenate reductase C
627	 56.57	0	627198..628703	-	501	148238963	-	SynWH7803_0627	-	hypothetical protein
628	 61.11	0	628782..629483	+	233	148238964	lepB	SynWH7803_0628	-	Signal peptidase I
629	 63.59	0	629455..630723	-	422	148238965	pyrC	SynWH7803_0629	-	dihydroorotase
630	 60.72	0	630742..632070	-	442	148238966	gmpB	SynWH7803_0630	-	phosphoglycerate mutase
631	 63.26	0	632229..633548	+	439	148238967	-	SynWH7803_0631	-	metal-dependent membrane protease
632	 64.69	0	633632..634087	+	151	148238968	-	SynWH7803_0632	-	hypothetical protein
633	 61.57	0	634091..635896	+	601	148238969	ftsI	SynWH7803_0633	-	peptidoglycan synthetase
634	 56.44	0	635988..637160	+	390	148238970	tal	SynWH7803_0634	-	transaldolase/EF-hand domain-containing protein
635	 57.11	0	637228..637614	+	128	148238971	-	SynWH7803_0635	-	cAMP-binding protein
636	 61.44	0	637663..639135	+	490	148238972	phr	SynWH7803_0636	-	deoxyribodipyrimidine photolyase
637	 64.75	0	639132..640277	-	381	148238973	-	SynWH7803_0637	-	dehydrogenase
638	 57.38	0	640274..640822	-	182	148238974	frr	SynWH7803_0638	-	ribosome recycling factor
639	 59.60	0	640831..641538	-	235	148238975	pyrH	SynWH7803_0639	-	uridylate kinase
640	 61.83	0	641641..641826	+	61	148238976	-	SynWH7803_0640	-	hypothetical protein
641	 59.76	0	641830..642495	-	221	148238977	cobO	SynWH7803_0641	-	Cob(I)alamin adenosyltransferase
642	 62.81	0	642492..643139	-	215	148238978	-	SynWH7803_0642	-	SAM-dependent methyltransferase
643	 63.20	0	643154..644308	-	384	148238979	-	SynWH7803_0643	-	Phage integrase family protein
644	 57.99	0	644381..645556	+	391	148238980	hemH	SynWH7803_0644	-	ferrochelatase
645	 61.49	0	645639..647492	+	617	148238981	ilvB	SynWH7803_0645	-	acetolactate synthase 3 catalytic subunit
646	 61.62	0	647492..647848	+	118	148238982	-	SynWH7803_0646	-	nuclease
647	 61.40	0	647850..648077	+	75	148238983	-	SynWH7803_0647	-	hypothetical protein
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.