IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
467	 64.70	0	479376..480596	-	406	148238803	-	SynWH7803_0467	-	hypothetical protein
468	 60.91	0	480751..481254	-	167	148238804	-	SynWH7803_0468	-	hypothetical protein
469	 58.93	0	481282..481449	-	55	148238805	-	SynWH7803_0469	-	hypothetical protein
470	 61.25	0	481500..482459	+	319	148238806	-	SynWH7803_0470	-	oxidoreductase
471	 60.68	0	482447..483064	-	205	148238807	-	SynWH7803_0471	-	hypothetical protein
472	 63.01	0	483194..484231	-	345	148238808	purM	SynWH7803_0472	-	phosphoribosylaminoimidazole synthetase
473	 62.32	0	484575..485126	+	183	148238809	rlpA	SynWH7803_0473	-	rare lipoprotein A
474	 62.46	0	485207..486679	+	490	148238810	-	SynWH7803_0474	-	bifunctional pantoate ligase/cytidylate kinase
475	 61.04	0	486663..487142	-	159	148238811	-	SynWH7803_0475	-	low molecular weight protein-tyrosine-phosphatase
476	 60.82	0	487139..487771	-	210	148238812	rpcF	SynWH7803_0476	-	phycobilin lyase beta subunit
477	 62.00	0	487771..488541	-	256	148238813	rpcE	SynWH7803_0477	-	phycobilin lyase alpha subunit
478	 58.08	0	488541..489134	-	197	148238814	-	SynWH7803_0478	-	hypothetical protein
479	 57.26	0	489215..489703	-	162	148238815	rpcA	SynWH7803_0479	-	R-phycocyanin II alpha chain
480	 59.34	0	489748..490266	-	172	148238816	rpcB	SynWH7803_0480	-	R-phycocyanin II beta chain
481	 58.33	0	490417..491220	-	267	148238817	pebB	SynWH7803_0481	-	phycoerythrobilin:ferredoxin oxidoreductase
482	 55.65	0	491217..491942	-	241	148238818	pebA	SynWH7803_0482	-	dihydrobiliverdin:ferredoxin oxidoreductase
483	 58.75	0	491942..492547	-	201	148238819	-	SynWH7803_0483	-	hypothetical protein
484	 56.02	0	492557..492772	-	71	148238820	-	SynWH7803_0484	-	hypothetical protein
485	 60.90	0	493139..493693	+	184	148238821	cpeB	SynWH7803_0485	-	C-phycoerythrin class I beta chain
486	 59.60	0	493750..494244	+	164	148238822	cpeA	SynWH7803_0486	-	C-phycoerythrin class I alpha chain
487	 51.10	-1	494531..495391	+	286	148238823	mpeE	SynWH7803_0487	-	phycobilisome linker polypeptide, C-phycoerythrin class II-associated
488	 56.80	0	495622..496239	+	205	148238824	cpeZ	SynWH7803_0488	-	bilin biosynthesis protein CpeZ
489	 57.64	0	496347..497243	-	298	148238825	mpeU	SynWH7803_0489	-	putative bilin biosynthesis protein, MpeV-like protein
490	 60.00	0	497315..497749	+	144	148238826	-	SynWH7803_0490	-	hypothetical protein
491	 53.60	-1	498182..499474	+	430	148238827	cpeY	SynWH7803_0491	-	bilin biosynthesis protein CpeY
492	 61.65	0	499571..500068	-	165	148238828	mpeA	SynWH7803_0492	-	C-phycoerythrin class II alpha chain
493	 59.89	0	500108..500653	-	181	148238829	mpeB	SynWH7803_0493	-	C-phycoerythrin class II beta chain
494	 58.29	0	500805..501998	-	397	148238830	-	SynWH7803_0494	-	bilin biosynthesis protein CpeY
495	 50.52	-2	502092..502382	+	96	148238831	-	SynWH7803_0495	-	hypothetical protein
496	 51.10	-1	502385..502975	+	196	148238832	-	SynWH7803_0496	-	hypothetical protein
497	 47.57	-2	502980..503288	-	102	148238833	cpeR	SynWH7803_0497	-	C-phycoerythrin operon regulator
498	 54.63	-1	503315..503929	-	204	148238834	cpeT	SynWH7803_0498	-	phycoerythrin linker gene region
499	 52.89	-1	503944..504480	-	178	148238835	cpeS	SynWH7803_0499	-	phycoerythrin linker gene region
500	 52.63	-1	504477..504647	-	56	148238836	-	SynWH7803_0500	-	hypothetical protein
501	 59.21	0	504765..505502	-	245	148238837	cpeE	SynWH7803_0501	-	phycobilisome linker polypeptide, C-phycoerythrin class I-associated
502	 59.84	0	505601..507241	-	546	148238838	mpeD	SynWH7803_0502	-	phycobilisome linker polypeptide, C-phycoerythrin-associated
503	 59.89	0	507353..508237	-	294	148238839	cpeC	SynWH7803_0503	-	phycobilisome linker polypeptide, C-phycoerythrin class I-associated
504	 58.81	0	508382..509056	-	224	148238840	-	SynWH7803_0504	-	hypothetical protein
505	 53.28	-1	509082..509813	-	243	148238841	cpcG2	SynWH7803_0505	-	phycobilisome rod-core linker polypeptide cpcG (L-RC 28.5)
506	 55.89	0	509860..510462	-	200	148238842	-	SynWH7803_0506	-	phycobilisome polypeptide
507	 57.43	0	510459..510902	-	147	148238843	-	SynWH7803_0507	-	hypothetical protein
508	 56.64	0	511066..511524	+	152	148238844	-	SynWH7803_0508	-	hypothetical protein
509	 50.00	-2	511543..511782	-	79	148238845	-	SynWH7803_0509	-	hypothetical protein
510	 62.44	0	511902..512564	-	220	148238846	-	SynWH7803_0510	-	amidophosphoribosyltransferase
511	 63.19	0	512586..512873	-	95	148238847	-	SynWH7803_0511	-	hypothetical protein
512	 63.04	0	513038..514306	-	422	148238848	-	SynWH7803_0512	-	sugar kinase
513	 59.29	0	514324..515583	-	419	148238849	metK	SynWH7803_0513	-	S-adenosylmethionine synthetase
514	 60.13	0	515630..516424	-	264	148238850	-	SynWH7803_0514	-	HAD superfamily phosphatase
515	 58.24	0	516439..517542	-	367	148238851	rpsA	SynWH7803_0515	-	30S ribosomal protein S1
516	 55.56	0	517647..518087	-	146	148238852	-	SynWH7803_0516	-	transcriptional regulator
517	 55.21	-1	518240..518335	-	31	148238853	psbT	SynWH7803_0517	-	photosystem II reaction center protein T
518	 58.85	0	518357..519916	-	519	148238854	psbB	SynWH7803_0518	-	photosystem II P680 chlorophyll A apoprotein (CP-47 protein)
519	 60.29	0	520178..520663	+	161	148238855	-	SynWH7803_0519	-	ferredoxin
520	 49.52	-2	520722..520826	+	34	148238856	psbM	SynWH7803_0520	-	photosystem II reaction center M protein
521	 60.31	0	520849..521697	-	282	148238857	uspA	SynWH7803_0521	-	universal stress protein
522	 63.09	0	521750..522196	+	148	148238858	-	SynWH7803_0522	-	thioesterase
523	 62.06	0	522208..523314	+	368	148238859	smf	SynWH7803_0523	-	Rossmann fold nucleotide-binding protein involved in DNA uptake
524	 62.67	0	523324..524223	+	299	148238860	hemK	SynWH7803_0524	-	protoporphyrinogen oxidase
525	 62.83	0	524244..524843	+	199	148238861	-	SynWH7803_0525	-	translation factor
526	 60.00	0	524848..525012	+	54	148238862	-	SynWH7803_0526	-	hypothetical protein
527	 54.88	-1	525093..525338	-	81	148238863	-	SynWH7803_0527	-	LuxR family transcriptional regulator
528	 56.38	0	525374..525655	-	93	148238864	minE	SynWH7803_0528	-	cell division topological specificity factor
529	 60.42	0	525661..526476	-	271	148238865	minD	SynWH7803_0529	-	septum site-determining protein MinD
530	 61.54	0	526510..527211	-	233	148238866	minC	SynWH7803_0530	-	septum site-determining protein MinC
531	 60.89	0	527221..528483	-	420	148238867	-	SynWH7803_0531	-	HD superfamily phosphohydrolase
532	 61.52	0	528483..529745	-	420	148238868	ctp	SynWH7803_0532	-	carboxyl-terminal processing protease
533	 54.49	-1	529846..530502	+	218	148238869	petB	SynWH7803_0533	-	cytochrome b6
534	 54.95	-1	530616..531059	+	147	148238870	petD	SynWH7803_0534	-	cytochrome b6-f complex subunit IV
535	 55.73	0	531241..532392	+	383	148238871	arsB	SynWH7803_0535	-	arsenical pump membrane protein
536	 57.18	0	532371..533867	-	498	148238872	-	SynWH7803_0536	-	neutral invertase-like protein
537	 48.70	-2	539990..540718	-	242	148238873	masA	SynWH7803_0537	-	putative enolase-phosphatase E-1
538	 50.65	-1	540715..541332	-	205	148238874	-	SynWH7803_0538	-	sugar aldolase
539	 58.45	0	541336..542187	-	283	148238875	mutM	SynWH7803_0539	-	formamidopyrimidine-DNA glycosylase
540	 56.67	0	542193..542402	-	69	148238876	psaE	SynWH7803_0540	-	photosystem I reaction center subunit IV
541	 60.81	0	542572..543579	+	335	148238877	-	SynWH7803_0541	-	hypothetical protein
542	 61.49	0	543622..545109	+	495	148238878	recQ	SynWH7803_0542	-	ATP-dependent DNA helicase
543	 60.70	0	545118..546173	-	351	148238879	-	SynWH7803_0543	-	LysM repeat-containing protein
544	 61.19	0	546252..547676	-	474	148238880	-	SynWH7803_0544	-	aldehyde dehydrogenase
545	 59.96	0	547764..549434	+	556	148238881	-	SynWH7803_0545	-	alpha-glucosidase
546	 65.27	+1	549455..551029	-	524	148238882	-	SynWH7803_0546	-	glycerol-3-phosphate dehydrogenase
547	 64.41	0	551022..552527	-	501	148238883	glpK	SynWH7803_0547	-	glycerol kinase
548	 62.06	0	552580..554034	+	484	148238884	-	SynWH7803_0548	-	alpha-glucosidase
549	 59.46	0	554257..554700	+	147	148238885	aroQ	SynWH7803_0549	-	3-dehydroquinate dehydratase
550	 58.06	0	554697..555347	+	216	148238886	miaE	SynWH7803_0550	-	tRNA-(MS[2]IO[6]A)-hydroxylase
551	 61.18	0	555917..556153	+	78	148238887	-	SynWH7803_0551	-	hypothetical protein
552	 43.20	-2	556259..556714	-	151	148238888	-	SynWH7803_0552	-	hypothetical protein
553	 48.83	-2	556748..557089	-	113	148238889	-	SynWH7803_0553	-	hypothetical protein
554	 45.69	-2	557139..557567	-	142	148238890	-	SynWH7803_0554	-	hypothetical protein
555	 42.67	-2	557664..558980	-	438	148238891	-	SynWH7803_0555	-	multidrug resistance efflux pump
556	 41.09	-2	558980..561247	-	755	148238892	-	SynWH7803_0556	-	ABC-type multidrug transport system, ATPase and permease components
557	 40.85	-2	561244..563478	-	744	148238893	-	SynWH7803_0557	-	ABC-type multidrug transport system, ATPase and permease components
558	 49.27	-2	563484..565202	-	572	148238894	-	SynWH7803_0558	-	hypothetical protein
559	 48.16	-2	565384..566496	+	370	148238895	-	SynWH7803_0559	-	hypothetical protein
560	 56.35	0	566523..567065	-	180	148238896	-	SynWH7803_0560	-	ARD/ARD' family protein (methionine salvage pathway)
561	 61.71	0	567185..567910	+	241	148238897	cobI	SynWH7803_0561	-	precorrin-2 C20-methyltransferase
562	 63.32	0	567937..568533	+	198	148238898	-	SynWH7803_0562	-	hypothetical protein
563	 63.54	0	568543..570558	-	671	148238899	-	SynWH7803_0563	-	glycosyl transferase family protein
564	 64.31	0	570555..571571	-	338	148238900	dus	SynWH7803_0564	-	tRNA-dihydrouridine synthase
565	 64.09	0	571623..572204	-	193	148238901	-	SynWH7803_0565	-	hypothetical protein
566	 65.81	+1	572284..572751	+	155	148238902	-	SynWH7803_0566	-	hypothetical protein
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.