IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
309	 60.81	0	333999..337223	-	1074	148238645	-	SynWH7803_0309	-	hypothetical protein
310	 57.50	0	337333..337452	-	39	148238646	psbI	SynWH7803_0310	-	photosystem II reaction center I protein I
311	 65.41	+1	337451..340477	+	1008	148238647	-	SynWH7803_0311	-	alpha-glucosidase
312	 58.16	0	340465..340605	-	46	148238648	psbN	SynWH7803_0312	-	photosystem II reaction center protein N
313	 57.71	0	340691..340891	+	66	148238649	psbH	SynWH7803_0313	-	photosystem II reaction center protein H
314	 55.02	-1	340927..341175	+	82	148238650	-	SynWH7803_0314	-	Sec-independent protein translocase protein TatA
315	 62.54	0	341178..341807	+	209	148238651	pth	SynWH7803_0315	-	peptidyl-tRNA hydrolase
316	 56.59	0	341807..342064	+	85	148238652	-	SynWH7803_0316	-	hypothetical protein
317	 65.07	0	342042..342479	-	145	148238653	-	SynWH7803_0317	-	polynucleotidyl transferase
318	 62.69	0	342476..343681	-	401	148238654	-	SynWH7803_0318	-	hypothetical protein
319	 59.86	0	343739..344473	-	244	148238655	ntcA	SynWH7803_0319	-	global nitrogen regulator
320	 63.64	0	344549..345274	-	241	148238656	rph	SynWH7803_0320	-	ribonuclease PH
321	 63.71	0	345434..346042	+	202	148238657	cobA	SynWH7803_0321	-	cob(I)alamin adenosyltransferase
322	 57.24	0	346042..346635	+	197	148238658	dcd	SynWH7803_0322	-	deoxycytidine triphosphate deaminase
323	 61.02	0	346657..347382	-	241	148238659	thyX	SynWH7803_0323	-	alternative thymidylate synthase
324	 63.93	0	347451..347999	-	182	148238660	-	SynWH7803_0324	-	thioredoxin
325	 60.08	0	348118..348588	+	156	148238661	-	SynWH7803_0325	-	hypothetical protein
326	 66.33	+1	348545..350602	-	685	148238662	-	SynWH7803_0326	-	soluble lytic transglycosylase
327	 66.67	+1	350651..350854	+	67	148238663	-	SynWH7803_0327	-	hypothetical protein
328	 65.87	+1	350943..352331	+	462	148238664	-	SynWH7803_0328	-	phosphoglucomutase/phosphomannomutase family protein
329	 66.77	+1	352318..353286	-	322	148238665	-	SynWH7803_0329	-	N-acetylglucosamine kinase
330	 65.36	+1	353283..354581	-	432	148238666	ictB	SynWH7803_0330	-	bicarbonate transporter
331	 64.99	0	354574..355287	-	237	148238667	trmB	SynWH7803_0331	-	tRNA (guanine-N(7))-methyltransferase
332	 64.03	0	355287..356612	-	441	148238668	-	SynWH7803_0332	-	hypothetical protein
333	 64.54	0	356683..357294	+	203	148238669	-	SynWH7803_0333	-	hypothetical protein
334	 60.38	0	357294..357611	+	105	148238670	-	SynWH7803_0334	-	hypothetical protein
335	 64.33	0	357589..360495	-	968	148238671	ileS	SynWH7803_0335	-	isoleucyl-tRNA synthetase
336	 65.04	0	360518..361132	-	204	148238672	-	SynWH7803_0336	-	hypothetical protein
337	 58.78	0	361336..362337	+	333	148238673	crtR	SynWH7803_0337	-	Beta-carotene hydroxylase
338	 61.90	0	362339..362632	-	97	148238674	gatC	SynWH7803_0338	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
339	 66.67	+1	362629..363417	-	262	148238675	-	SynWH7803_0339	-	amidase
340	 60.42	0	363450..363593	-	47	148238676	-	SynWH7803_0340	-	hypothetical protein
341	 62.10	0	363599..364387	-	262	148238677	-	SynWH7803_0341	-	hypothetical protein
342	 47.84	-2	364679..365002	-	107	148238678	-	SynWH7803_0342	-	hypothetical protein
343	 64.09	0	365229..365810	+	193	148238679	-	SynWH7803_0343	-	putative 3-methyladenine DNA glycosylase
344	 63.75	0	365807..366835	+	342	148238680	pyrB	SynWH7803_0344	-	aspartate carbamoyltransferase catalytic subunit
345	 62.18	0	366796..368289	-	497	148238681	-	SynWH7803_0345	-	NADH dehydrogenase
346	 59.06	0	368385..368726	-	113	148238682	-	SynWH7803_0346	-	hypothetical protein
347	 57.71	0	368950..369150	-	66	148238683	-	SynWH7803_0347	-	hypothetical protein
348	 62.00	0	369216..369365	-	49	148238684	-	SynWH7803_0348	-	hypothetical protein
349	 54.17	-1	369362..369529	-	55	148238685	-	SynWH7803_0349	-	hypothetical protein
350	 63.73	0	369694..369897	+	67	148238686	-	SynWH7803_0350	-	hypothetical protein
351	 64.76	0	369901..371157	+	418	148238687	dfp	SynWH7803_0351	-	coenzyme A biosynthesis bifunctional protein CoaBC (DNA/pantothenate metabolism flavoprotein)
352	 56.54	0	371154..371459	-	101	148238688	-	SynWH7803_0352	-	hypothetical protein
353	 57.06	0	371577..372398	+	273	148238689	psbO	SynWH7803_0353	-	photosystem II manganese-stabilizing protein PsbO
354	 59.83	0	372504..373673	+	389	148238690	cysD	SynWH7803_0354	-	Sulfate adenylyltransferase
355	 58.47	0	373719..375572	+	617	148238691	ftsH	SynWH7803_0355	-	cell division protein FtsH
356	 60.70	0	375598..376200	+	200	148238692	kdgA	SynWH7803_0356	-	KHG/KDPG aldolase (4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase
357	 58.88	0	376300..376851	-	183	148238693	-	SynWH7803_0357	-	hypothetical protein
358	 61.43	0	376890..377978	-	362	148238694	aroC	SynWH7803_0358	-	chorismate synthase
359	 61.71	0	378009..378512	-	167	148238695	-	SynWH7803_0359	-	hypothetical protein
360	 62.72	0	378512..379372	-	286	148238696	-	SynWH7803_0360	-	sarcosine-dimethylglycine methyltransferase
361	 58.75	0	379378..380286	-	302	148238697	-	SynWH7803_0361	-	glycine-sarcosine methyltransferase
362	 60.04	0	380534..381664	+	376	148238698	proV	SynWH7803_0362	-	ABC-type glycine betaine/L-proline transport ATP-binding protein ProV
363	 59.87	0	381664..382560	+	298	148238699	proW	SynWH7803_0363	-	ABC-type glycine betaine/L-proline transport system permease protein ProW
364	 58.31	0	382557..383525	+	322	148238700	proX	SynWH7803_0364	-	ABC-type proline/glycine betaine transport systems, periplasmic components
365	 57.42	0	383535..384410	-	291	148238701	nctP	SynWH7803_0365	-	Sodium dependent transporter
366	 60.65	0	384540..385619	-	359	148238702	psbA	SynWH7803_0366	-	photosystem II protein D1
367	 57.88	0	385792..387408	+	538	148238703	-	SynWH7803_0367	-	Fe-S oxidoreductase
368	 62.88	0	387372..388163	-	263	148238704	-	SynWH7803_0368	-	CAAX amino protease
369	 62.93	0	388232..388552	-	106	148238705	clpS	SynWH7803_0369	-	ATP-dependent Clp protease adaptor protein ClpS
370	 58.99	0	388598..389848	-	416	148238706	-	SynWH7803_0370	-	L,L-diaminopimelate aminotransferase
371	 62.22	0	389920..392751	+	943	148238707	-	SynWH7803_0371	-	Fe-S oxidoreductase
372	 62.29	0	392773..394713	+	646	148238708	cafA	SynWH7803_0372	-	ribonucleases G and E
373	 63.59	0	394710..395294	+	194	148238709	rnhB	SynWH7803_0373	-	ribonuclease HII
374	 57.19	0	395256..395825	-	189	148238710	-	SynWH7803_0374	-	hypothetical protein
375	 61.63	0	395883..396716	+	277	148238711	pheA	SynWH7803_0375	-	prephenate dehydratase
376	 60.35	0	396692..397657	-	321	148238712	-	SynWH7803_0376	-	sterol-C-methyltransferase
377	 57.62	0	397657..398319	-	220	148238713	-	SynWH7803_0377	-	Lon protease domain-containing protein
378	 56.07	0	398376..398696	-	106	148238714	rpsJ	SynWH7803_0378	-	30S ribosomal protein S10
379	 59.92	0	398845..400044	-	399	148238715	tuf	SynWH7803_0379	-	elongation factor Tu
380	 57.23	0	400087..402162	-	691	148238716	fusA	SynWH7803_0380	-	elongation factor G
381	 62.63	0	402249..402719	-	156	148238717	rpsG	SynWH7803_0381	-	30S ribosomal protein S7
382	 59.47	0	402801..403175	-	124	148238718	rpsL	SynWH7803_0382	-	30S ribosomal protein S12
383	 60.86	0	403253..403579	-	108	148238719	-	SynWH7803_0383	-	hypothetical protein
384	 63.60	0	403623..405320	-	565	148238720	-	SynWH7803_0384	-	hypothetical protein
385	 65.04	0	405422..410020	+	1532	148238721	gltS	SynWH7803_0385	-	ferredoxin-dependent glutamate synthase
386	 65.70	+1	410035..410343	+	102	148238722	-	SynWH7803_0386	-	hypothetical protein
387	 63.59	0	410321..411199	-	292	148238723	lipA	SynWH7803_0387	-	lipoyl synthase
388	 65.41	+1	411307..413055	-	582	148238724	-	SynWH7803_0388	-	bifunctional cobalamin biosynthesis protein/precorrin-3B C17-methyltransferase CbiG/CobJ
389	 63.75	0	413176..414510	-	444	148238725	-	SynWH7803_0389	-	hypothetical protein
390	 65.91	+1	414711..414974	+	87	148238726	-	SynWH7803_0390	-	hypothetical protein
391	 59.46	0	414925..417228	+	767	148238727	psaA	SynWH7803_0391	-	photosystem I P700 chlorophyll a apoprotein A1
392	 59.95	0	417251..419467	+	738	148238728	psaB	SynWH7803_0392	-	photosystem I P700 chlorophyll a apoprotein A2
393	 62.24	0	419557..420483	-	308	148238729	-	SynWH7803_0393	-	hypothetical protein
394	 60.78	0	420639..420944	+	101	148238730	-	SynWH7803_0394	-	hypothetical protein
395	 61.31	0	420941..424078	-	1045	148238731	-	SynWH7803_0395	-	RND family multidrug efflux protein
396	 61.38	0	424189..424680	-	163	148238732	psaL	SynWH7803_0396	-	photosystem I reaction centre subunit XI
397	 56.41	0	424739..424855	-	38	148238733	psaI	SynWH7803_0397	-	photosystem I reaction center subunit VIII
398	 65.87	+1	424970..425470	+	166	148238734	-	SynWH7803_0398	-	hypothetical protein
399	 61.77	0	425428..426387	-	319	148238735	-	SynWH7803_0399	-	glycosyl transferase family protein
400	 59.63	0	426460..427113	-	217	148238736	-	SynWH7803_0400	-	hypothetical protein
401	 64.51	0	427165..427905	-	246	148238737	-	SynWH7803_0401	-	cell wall-associated hydrolase
402	 61.78	0	427923..428822	+	299	148238738	-	SynWH7803_0402	-	hypothetical protein
403	 64.13	0	428961..430142	-	393	148238739	alr	SynWH7803_0403	-	alanine racemase
404	 58.23	0	430215..430712	+	165	148238740	-	SynWH7803_0404	-	McrA/HNH family nuclease
405	 61.11	0	430714..431811	-	365	148238741	prfA	SynWH7803_0405	-	peptide chain release factor 1
406	 56.98	0	431925..432182	-	85	148238742	rpmE	SynWH7803_0406	-	50S ribosomal protein L31
407	 59.51	0	432191..432595	-	134	148238743	rpsI	SynWH7803_0407	-	30S ribosomal protein S9
408	 60.04	0	432592..433044	-	150	148238744	rplM	SynWH7803_0408	-	50S ribosomal protein L13
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.