IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2352	 62.86	0	2173202..2173726	-	174	148240688	-	SynWH7803_2352	-	hypothetical protein
2353	 65.31	+1	2173750..2174340	-	196	148240689	hupE	SynWH7803_2353	-	hydrogenase/urease accessory protein
2354	 60.95	0	2174342..2175355	-	337	148240690	-	SynWH7803_2354	-	hypothetical protein
2355	 61.75	0	2175361..2176215	-	284	148240691	-	SynWH7803_2355	-	hypothetical protein
2356	 60.22	0	2176215..2178122	-	635	148240692	-	SynWH7803_2356	-	hypothetical protein
2357	 66.67	+1	2178399..2178626	+	75	148240693	-	SynWH7803_2357	-	hypothetical protein
2358	 63.78	0	2178640..2179089	-	149	148240694	-	SynWH7803_2358	-	hypothetical protein
2359	 66.01	+1	2179167..2180075	+	302	148240695	-	SynWH7803_2359	-	hydroxyacid dehydrogenase/reductase family protein
2360	 62.22	0	2180078..2180797	-	239	148240696	-	SynWH7803_2360	-	hypothetical protein
2361	 67.60	+1	2180877..2181953	+	358	148240697	-	SynWH7803_2361	-	glycosyltransferase family  undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase
2362	 66.84	+1	2181955..2183088	-	377	148240698	-	SynWH7803_2362	-	histidinol-phosphate/aromatic aminotransferase related enzyme
2363	 64.85	0	2183162..2183986	+	274	148240699	-	SynWH7803_2363	-	pentapeptide/TPR repeat-containing protein
2364	 55.17	-1	2183996..2186317	-	773	148240700	gspD	SynWH7803_2364	-	general secretory pathway protein D
2365	 62.65	0	2186408..2187154	-	248	148240701	-	SynWH7803_2365	-	hypothetical protein
2366	 63.35	0	2187151..2187843	-	230	148240702	-	SynWH7803_2366	-	hypothetical protein
2367	 68.19	+1	2187840..2188757	-	305	148240703	-	SynWH7803_2367	-	hypothetical protein
2368	 66.41	+1	2188803..2189981	-	392	148240704	pyrD	SynWH7803_2368	-	dihydroorotate dehydrogenase 2
2369	 64.45	0	2189996..2190718	-	240	148240705	rnhA	SynWH7803_2369	-	ribonuclease H
2370	 62.53	0	2190734..2191483	+	249	148240706	-	SynWH7803_2370	-	hypothetical protein
2371	 58.02	0	2191741..2192133	-	130	148240707	rplL	SynWH7803_2371	-	50S ribosomal protein L7/L12
2372	 56.63	0	2192181..2192708	-	175	148240708	rplJ	SynWH7803_2372	-	50S ribosomal protein L10
2373	 60.17	0	2192950..2193657	-	235	148240709	rplA	SynWH7803_2373	-	50S ribosomal protein L1
2374	 59.86	0	2193738..2194163	-	141	148240710	rplK	SynWH7803_2374	-	50S ribosomal protein L11
2375	 59.34	0	2194274..2194942	-	222	148240711	nusG	SynWH7803_2375	-	transcription antitermination protein NusG
2376	 59.44	0	2195006..2195254	-	82	148240712	secE	SynWH7803_2376	-	preprotein translocase subunit SecE
2377	 64.06	0	2195348..2198113	-	921	148240713	clpB	SynWH7803_2377	-	chaperone ClpB
2378	 60.69	0	2198125..2198643	-	172	148240714	gloA	SynWH7803_2378	-	lactoylglutathione lyase
2379	 62.65	0	2198673..2199965	+	430	148240715	eno	SynWH7803_2379	-	enolase
2380	 63.22	0	2199986..2201668	-	560	148240716	-	SynWH7803_2380	-	protein kinase
2381	 61.90	0	2201665..2201979	-	104	148240717	-	SynWH7803_2381	-	hypothetical protein
2382	 63.90	0	2202019..2202633	-	204	148240718	-	SynWH7803_2382	-	hypothetical protein
2383	 65.12	0	2202719..2204011	-	430	148240719	argJ	SynWH7803_2383	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2384	 65.03	0	2204010..2204621	+	203	148240720	coaE	SynWH7803_2384	-	dephospho-CoA kinase
2385	 60.94	0	2204629..2206113	-	494	148240721	gatB	SynWH7803_2385	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2386	 66.58	+1	2206182..2207309	+	375	148240722	-	SynWH7803_2386	-	glycine/D-amino acid oxidase family protein
2387	 66.67	+1	2207302..2208648	-	448	148240723	glnAIII	SynWH7803_2387	-	glutamine synthetase III
2388	 61.66	0	2208718..2209176	-	152	148240724	ndk	SynWH7803_2388	-	nucleoside diphosphate kinase
2389	 63.06	0	2209313..2211223	+	636	148240725	speA	SynWH7803_2389	-	arginine decarboxylase
2390	 59.13	0	2211227..2211889	+	220	148240726	-	SynWH7803_2390	-	hypothetical protein
2391	 57.64	0	2211947..2212522	+	191	148240727	-	SynWH7803_2391	-	cAMP-dependent protein kinase activator/regulatory subunit
2392	 44.43	-2	2212734..2214455	+	573	148240728	-	SynWH7803_2392	-	hypothetical protein
2393	 44.76	-2	2214467..2221093	-	2208	148240729	-	SynWH7803_2393	-	hypothetical protein
2394	 60.01	0	2221447..2223309	+	620	148240730	cya1	SynWH7803_2394	-	adenylate cyclase
2395	 54.28	-1	2223432..2224085	-	217	148240731	-	SynWH7803_2395	-	hypothetical protein
2396	 49.86	-2	2224156..2225553	-	465	148240732	-	SynWH7803_2396	-	hypothetical protein
2397	 50.43	-2	2225680..2226030	-	116	148240733	-	SynWH7803_2397	-	hypothetical protein
2398	 63.23	0	2226072..2228747	-	891	148240734	alaS	SynWH7803_2398	-	alanyl-tRNA synthetase
2399	 65.49	+1	2228783..2229208	+	141	148240735	-	SynWH7803_2399	-	hypothetical protein
2400	 65.14	0	2229205..2232417	+	1070	148240736	hepA	SynWH7803_2400	-	SNF2 family DNA/RNA helicase
2401	 64.56	0	2232414..2233316	+	300	148240737	-	SynWH7803_2401	-	hypothetical protein
2402	 65.83	+1	2233309..2233788	+	159	148240738	-	SynWH7803_2402	-	hypothetical protein
2403	 61.11	0	2233963..2234376	+	137	148240739	-	SynWH7803_2403	-	molecular chaperone (small heat shock protein)
2404	 62.30	0	2234467..2235771	-	434	148240740	-	SynWH7803_2404	-	Mn2+/Fe2+ transporter
2405	 62.62	0	2235844..2237598	+	584	148240741	dfa	SynWH7803_2405	-	diflavin flavoprotein A
2406	 64.81	0	2237598..2239427	+	609	148240742	dfa	SynWH7803_2406	-	diflavin flavoprotein A
2407	 62.88	0	2239502..2240029	+	175	148240743	-	SynWH7803_2407	-	flavoprotein
2408	 61.20	0	2240053..2240802	+	249	148240744	-	SynWH7803_2408	-	putative Pirin-related protein
2409	 58.88	0	2240820..2241821	+	333	148240745	-	SynWH7803_2409	-	permease
2410	 57.97	0	2242059..2242265	+	68	148240746	-	SynWH7803_2410	-	hypothetical protein
2411	 62.07	0	2242272..2242532	-	86	148240747	-	SynWH7803_2411	-	hypothetical protein
2412	 63.84	0	2242630..2245566	-	978	148240748	gcvP	SynWH7803_2412	-	glycine dehydrogenase
2413	 61.54	0	2245624..2246013	-	129	148240749	gcvH	SynWH7803_2413	-	glycine cleavage system protein H
2414	 63.64	0	2246035..2247354	-	439	148240750	metC	SynWH7803_2414	-	cystathionine beta-lyase family aluminum resistance protein
2415	 64.14	0	2247475..2248386	+	303	148240751	desC	SynWH7803_2415	-	Fatty-acid desaturase
2416	 61.98	0	2248374..2249099	-	241	148240752	-	SynWH7803_2416	-	hypothetical protein
2417	 63.14	0	2249293..2250087	+	264	148240753	desC	SynWH7803_2417	-	Fatty-acid desaturase
2418	 62.09	0	2250129..2250587	+	152	148240754	rplI	SynWH7803_2418	-	50S ribosomal protein L9
2419	 63.78	0	2250685..2252103	+	472	148240755	dnaB	SynWH7803_2419	-	replicative DNA helicase
2420	 64.55	0	2252126..2254105	+	659	148240756	gidA	SynWH7803_2420	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2421	 64.99	0	2254130..2254846	+	238	148240757	-	SynWH7803_2421	-	hypothetical protein
2422	 65.06	0	2254879..2255439	+	186	148240758	-	SynWH7803_2422	-	hypothetical protein
2423	 65.03	0	2255527..2255955	+	142	148240759	-	SynWH7803_2423	-	hypothetical protein
2424	 63.98	0	2255942..2256463	-	173	148240760	-	SynWH7803_2424	-	hypothetical protein
2425	 66.10	+1	2256506..2257036	-	176	148240761	-	SynWH7803_2425	-	hypothetical protein
2426	 64.85	0	2257147..2257695	-	182	148240762	-	SynWH7803_2426	-	hypothetical protein
2427	 57.18	0	2257787..2258218	+	143	148240763	-	SynWH7803_2427	-	hypothetical protein
2428	 64.28	0	2258235..2260331	+	698	148240764	ligA	SynWH7803_2428	-	NAD-dependent DNA ligase LigA
2429	 59.50	0	2260350..2261465	+	371	148240765	-	SynWH7803_2429	-	hypothetical protein
2430	 60.85	0	2261462..2261650	+	62	148240766	-	SynWH7803_2430	-	hypothetical protein
2431	 63.36	0	2261632..2262267	-	211	148240767	-	SynWH7803_2431	-	hypothetical protein
2432	 62.69	0	2262298..2264058	+	586	148240768	-	SynWH7803_2432	-	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
2433	 59.57	0	2264055..2265365	+	436	148240769	tauB	SynWH7803_2433	-	ABC-type anion transport system for nitrate/sulfonate/bicarbonate, ATPase component
2434	 57.50	0	2265362..2266594	+	410	148240770	-	SynWH7803_2434	-	ABC transport system, substrate binding protein component
2435	 57.35	0	2266591..2267943	+	450	148240771	-	SynWH7803_2435	-	small-conductance mechanosensitive channel
2436	 53.15	-1	2268022..2269086	+	354	148240772	-	SynWH7803_2436	-	small-conductance mechanosensitive channel protein
2437	 63.88	0	2269101..2269889	-	262	148240773	-	SynWH7803_2437	-	hypothetical protein
2438	 63.28	0	2269889..2270686	-	265	148240774	-	SynWH7803_2438	-	ABC-type multidrug transport system, permease component
2439	 65.64	+1	2270686..2271660	-	324	148240775	-	SynWH7803_2439	-	ABC-type multidrug transport system, ATPase component
2440	 66.01	+1	2271665..2274409	-	914	148240776	valS	SynWH7803_2440	-	valyl-tRNA synthetase
2441	 56.64	0	2274466..2275722	+	418	148240777	-	SynWH7803_2441	-	sugar ABC transporter periplasmic protein
2442	 59.06	0	2275719..2276993	+	424	148240778	-	SynWH7803_2442	-	small-conductance mechanosensitive channel
2443	 62.11	0	2276944..2277513	-	189	148240779	-	SynWH7803_2443	-	hypothetical protein
2444	 61.00	0	2277575..2278033	-	152	148240780	-	SynWH7803_2444	-	hypothetical protein
2445	 56.98	0	2278101..2278358	+	85	148240781	-	SynWH7803_2445	-	hypothetical protein
2446	 64.06	0	2278400..2279320	+	306	148240782	-	SynWH7803_2446	-	Short-chain dehydrogenase/reductase of unknown specificity
2447	 60.56	0	2279332..2279724	+	130	148240783	-	SynWH7803_2447	-	ferric uptake regulator family protein
2448	 66.86	+1	2279877..2280389	+	170	148240784	-	SynWH7803_2448	-	membrane protein (putative metal-binding protein)
2449	 64.30	0	2280419..2281264	+	281	148240785	mazG	SynWH7803_2449	-	nucleoside triphosphate pyrophosphohydrolase
2450	 63.97	0	2281271..2282011	-	246	148240786	-	SynWH7803_2450	-	dienelactone hydrolase family protein
2451	 67.13	+1	2282303..2282737	-	144	148240787	-	SynWH7803_2451	-	hypothetical protein
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.