IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2279	 53.68	-1	2103144..2103551	+	135	148240615	-	SynWH7803_2279	-	hypothetical protein
2280	 56.82	0	2103892..2105547	+	551	148240616	ndhD	SynWH7803_2280	-	NAD(P)H-quinone oxidoreductase subunit 4
2281	 61.02	0	2105601..2106503	+	300	148240617	-	SynWH7803_2281	-	hypothetical protein
2282	 56.83	0	2106550..2107728	+	392	148240618	-	SynWH7803_2282	-	nucleoside-diphosphate-sugar transferase
2283	 61.30	0	2107709..2108602	-	297	148240619	metF	SynWH7803_2283	-	5-10-methylenetetrahydrofolate reductase
2284	 54.12	-1	2108691..2108969	+	92	148240620	-	SynWH7803_2284	-	LuxR family transcriptional regulator
2285	 56.99	0	2108926..2109111	-	61	148240621	-	SynWH7803_2285	-	hypothetical protein
2286	 62.55	0	2109178..2109687	-	169	148240622	-	SynWH7803_2286	-	hypothetical protein
2287	 59.98	0	2109695..2110636	-	313	148240623	ppnK	SynWH7803_2287	-	inorganic polyphosphate/ATP-NAD kinase
2288	 53.45	-1	2110652..2110984	-	110	148240624	ndhE	SynWH7803_2288	-	NADH dehydrogenase subunit K
2289	 59.50	0	2111006..2111605	-	199	148240625	ndhG	SynWH7803_2289	-	NADH dehydrogenase subunit J
2290	 58.90	0	2111602..2112258	-	218	148240626	-	SynWH7803_2290	-	NADH dehydrogenase subunit I
2291	 59.05	0	2112340..2113494	-	384	148240627	ndhA	SynWH7803_2291	-	NADH dehydrogenase subunit H
2292	 59.78	0	2113519..2114709	-	396	148240628	gltA	SynWH7803_2292	-	methylcitrate synthase
2293	 62.67	0	2114735..2115235	-	166	148240629	sixA	SynWH7803_2293	-	putative phosphohistidine phosphatase
2294	 63.27	0	2115213..2116922	-	569	148240630	-	SynWH7803_2294	-	hypothetical protein
2295	 61.82	0	2116921..2117271	+	116	148240631	pspE	SynWH7803_2295	-	putative rhodanese-related sulfurtransferase
2296	 59.64	0	2117366..2118361	+	331	148240632	hcrA	SynWH7803_2296	-	heat-inducible transcription repressor HrcA
2297	 55.65	0	2118554..2119588	+	344	148240633	-	SynWH7803_2297	-	branched-chain amino acid ABC transporter periplasmic protein
2298	 48.20	-2	2119606..2120829	-	407	148240634	-	SynWH7803_2298	-	hypothetical protein
2299	 62.43	0	2120886..2122136	-	416	148240635	trpB	SynWH7803_2299	-	tryptophan synthase subunit beta
2300	 63.33	0	2122175..2123134	-	319	148240636	-	SynWH7803_2300	-	SAM-dependent methyltransferase
2301	 61.47	0	2123174..2123500	+	108	148240637	-	SynWH7803_2301	-	translation initiation factor SUI1
2302	 59.78	0	2123539..2124162	+	207	148240638	cysC	SynWH7803_2302	-	adenylylsulfate kinase
2303	 59.44	0	2124143..2125222	-	359	148240639	-	SynWH7803_2303	-	permease
2304	 63.79	0	2125219..2125740	-	173	148240640	purE	SynWH7803_2304	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
2305	 64.42	0	2125856..2127010	+	384	148240641	nagA	SynWH7803_2305	-	N-acetylglucosamine-6-phosphate deacetylase
2306	 58.16	0	2127037..2127753	+	238	148240642	chlM	SynWH7803_2306	-	Mg-protoporphyrin IX methyl transferase
2307	 49.74	-2	2127754..2128326	-	190	148240643	-	SynWH7803_2307	-	hypothetical protein
2308	 62.43	0	2128368..2129312	-	314	148240644	-	SynWH7803_2308	-	pseudouridylate synthase
2309	 60.64	0	2129309..2130022	-	237	148240645	-	SynWH7803_2309	-	two-component system response regulator
2310	 58.91	0	2130056..2130571	-	171	148240646	-	SynWH7803_2310	-	hypothetical protein
2311	 64.46	0	2130595..2131773	+	392	148240647	-	SynWH7803_2311	-	cysteine desulfurase
2312	 45.27	-2	2131861..2132631	+	256	148240648	-	SynWH7803_2312	-	hypothetical protein
2313	 63.83	0	2132888..2133805	-	305	148240649	mraW	SynWH7803_2313	-	S-adenosyl-methyltransferase MraW
2314	 59.16	0	2133850..2135034	+	394	148240650	ndhH	SynWH7803_2314	-	NAD(P)H-quinone oxidoreductase subunit H
2315	 59.96	0	2135024..2135485	+	153	148240651	-	SynWH7803_2315	-	thioesterase
2316	 65.62	+1	2135509..2136747	-	412	148240652	menE	SynWH7803_2316	-	O-succinylbenzoate-CoA ligase
2317	 67.66	+1	2136744..2137754	-	336	148240653	menC	SynWH7803_2317	-	O-succinylbenzoate synthase
2318	 65.75	+1	2137759..2138739	-	326	148240654	menA	SynWH7803_2318	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2319	 66.94	+1	2138810..2140249	+	479	148240655	menF	SynWH7803_2319	-	isochorismate synthase
2320	 61.82	0	2140202..2142223	-	673	148240656	-	SynWH7803_2320	-	dipeptidyl aminopeptidase/acylaminoacyl-peptidase
2321	 63.42	0	2142259..2143182	-	307	148240657	gshB	SynWH7803_2321	-	glutathione synthetase
2322	 61.18	0	2143206..2143460	-	84	148240658	-	SynWH7803_2322	-	glutaredoxin
2323	 63.90	0	2143513..2144307	+	264	148240659	-	SynWH7803_2323	-	hypothetical protein
2324	 64.92	0	2144304..2145335	+	343	148240660	-	SynWH7803_2324	-	hypothetical protein
2325	 59.85	0	2145427..2146497	+	356	148240661	prfB	SynWH7803_2325	-	peptide chain release factor 2
2326	 60.92	0	2146500..2146673	+	57	148240662	-	SynWH7803_2326	-	hypothetical protein
2327	 61.19	0	2146670..2147272	+	200	148240663	-	SynWH7803_2327	-	metal-dependent hydrolase
2328	 62.66	0	2147250..2147723	+	157	148240664	dgkA	SynWH7803_2328	-	diacylglycerol kinase
2329	 64.37	0	2147727..2148335	+	202	148240665	pabA	SynWH7803_2329	-	Para-aminobenzoate synthase component II
2330	 66.40	+1	2148362..2149105	+	247	148240666	-	SynWH7803_2330	-	Zn-dependent hydrolase
2331	 64.69	0	2149119..2150231	-	370	148240667	hisC	SynWH7803_2331	-	histidinol-phosphate aminotransferase
2332	 65.04	0	2150247..2151725	-	492	148240668	-	SynWH7803_2332	-	hypothetical protein
2333	 64.44	0	2151795..2153504	+	569	148240669	-	SynWH7803_2333	-	hypothetical protein
2334	 65.17	0	2153496..2154494	-	332	148240670	yccC	SynWH7803_2334	-	putative L-asparaginase
2335	 64.68	0	2154494..2156002	-	502	148240671	-	SynWH7803_2335	-	hypothetical protein
2336	 65.11	0	2156002..2157795	-	597	148240672	argS	SynWH7803_2336	-	arginyl-tRNA synthetase
2337	 65.87	+1	2157826..2158701	-	291	148240673	nadC	SynWH7803_2337	-	nicotinate-nucleotide pyrophosphorylase
2338	 65.48	+1	2158701..2159207	-	168	148240674	-	SynWH7803_2338	-	hypothetical protein
2339	 66.10	+1	2159295..2159828	+	177	148240675	def	SynWH7803_2339	-	peptide deformylase
2340	 65.80	+1	2159833..2161215	-	460	148240676	trmE	SynWH7803_2340	-	tRNA modification GTPase TrmE
2341	 66.00	+1	2161293..2161742	+	149	148240677	-	SynWH7803_2341	-	hypothetical protein
2342	 60.65	0	2161856..2164249	-	797	148240678	spoT	SynWH7803_2342	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
2343	 65.92	+1	2164248..2165852	+	534	148240679	-	SynWH7803_2343	-	ABC transporter ATP-binding protein
2344	 58.87	0	2165857..2166549	+	230	148240680	-	SynWH7803_2344	-	two-component system response regulator
2345	 62.14	0	2166741..2168330	+	529	148240681	-	SynWH7803_2345	-	carbohydrate-binding protein; modular; contains two CBM2 modules
2346	 52.53	-1	2168406..2169197	+	263	148240682	-	SynWH7803_2346	-	periplasmic substrate-binding protein
2347	 54.11	-1	2169303..2169509	+	68	148240683	-	SynWH7803_2347	-	hypothetical protein
2348	 62.67	0	2169555..2170556	-	333	148240684	-	SynWH7803_2348	-	pseudouridylate synthase, 23S RNA-specific
2349	 65.28	+1	2170553..2171419	-	288	148240685	rbgA	SynWH7803_2349	-	ribosomal biogenesis GTPase
2350	 61.72	0	2171416..2171799	-	127	148240686	usp	SynWH7803_2350	-	universal stress protein family protein
2351	 64.85	0	2171900..2173108	+	402	148240687	pgk	SynWH7803_2351	-	phosphoglycerate kinase
2352	 62.86	0	2173202..2173726	-	174	148240688	-	SynWH7803_2352	-	hypothetical protein
2353	 65.31	+1	2173750..2174340	-	196	148240689	hupE	SynWH7803_2353	-	hydrogenase/urease accessory protein
2354	 60.95	0	2174342..2175355	-	337	148240690	-	SynWH7803_2354	-	hypothetical protein
2355	 61.75	0	2175361..2176215	-	284	148240691	-	SynWH7803_2355	-	hypothetical protein
2356	 60.22	0	2176215..2178122	-	635	148240692	-	SynWH7803_2356	-	hypothetical protein
2357	 66.67	+1	2178399..2178626	+	75	148240693	-	SynWH7803_2357	-	hypothetical protein
2358	 63.78	0	2178640..2179089	-	149	148240694	-	SynWH7803_2358	-	hypothetical protein
2359	 66.01	+1	2179167..2180075	+	302	148240695	-	SynWH7803_2359	-	hydroxyacid dehydrogenase/reductase family protein
2360	 62.22	0	2180078..2180797	-	239	148240696	-	SynWH7803_2360	-	hypothetical protein
2361	 67.60	+1	2180877..2181953	+	358	148240697	-	SynWH7803_2361	-	glycosyltransferase family  undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase
2362	 66.84	+1	2181955..2183088	-	377	148240698	-	SynWH7803_2362	-	histidinol-phosphate/aromatic aminotransferase related enzyme
2363	 64.85	0	2183162..2183986	+	274	148240699	-	SynWH7803_2363	-	pentapeptide/TPR repeat-containing protein
2364	 55.17	-1	2183996..2186317	-	773	148240700	gspD	SynWH7803_2364	-	general secretory pathway protein D
2365	 62.65	0	2186408..2187154	-	248	148240701	-	SynWH7803_2365	-	hypothetical protein
2366	 63.35	0	2187151..2187843	-	230	148240702	-	SynWH7803_2366	-	hypothetical protein
2367	 68.19	+1	2187840..2188757	-	305	148240703	-	SynWH7803_2367	-	hypothetical protein
2368	 66.41	+1	2188803..2189981	-	392	148240704	pyrD	SynWH7803_2368	-	dihydroorotate dehydrogenase 2
2369	 64.45	0	2189996..2190718	-	240	148240705	rnhA	SynWH7803_2369	-	ribonuclease H
2370	 62.53	0	2190734..2191483	+	249	148240706	-	SynWH7803_2370	-	hypothetical protein
2371	 58.02	0	2191741..2192133	-	130	148240707	rplL	SynWH7803_2371	-	50S ribosomal protein L7/L12
2372	 56.63	0	2192181..2192708	-	175	148240708	rplJ	SynWH7803_2372	-	50S ribosomal protein L10
2373	 60.17	0	2192950..2193657	-	235	148240709	rplA	SynWH7803_2373	-	50S ribosomal protein L1
2374	 59.86	0	2193738..2194163	-	141	148240710	rplK	SynWH7803_2374	-	50S ribosomal protein L11
2375	 59.34	0	2194274..2194942	-	222	148240711	nusG	SynWH7803_2375	-	transcription antitermination protein NusG
2376	 59.44	0	2195006..2195254	-	82	148240712	secE	SynWH7803_2376	-	preprotein translocase subunit SecE
2377	 64.06	0	2195348..2198113	-	921	148240713	clpB	SynWH7803_2377	-	chaperone ClpB
2378	 60.69	0	2198125..2198643	-	172	148240714	gloA	SynWH7803_2378	-	lactoylglutathione lyase
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.