IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2146	 64.27	0	1967833..1968582	+	249	148240482	-	SynWH7803_2146	-	SAM-dependent methyltransferase
2147	 62.10	0	1968546..1969814	-	422	148240483	csd	SynWH7803_2147	-	selenocysteine lyase
2148	 63.49	0	1969811..1971007	-	398	148240484	sufD	SynWH7803_2148	-	SufD protein, Fe-S cluster assembly
2149	 59.19	0	1971010..1971798	-	262	148240485	sufC	SynWH7803_2149	-	FeS assembly ATPase SufC
2150	 57.22	0	1971851..1973290	-	479	148240486	sufB	SynWH7803_2150	-	cysteine desulfurase activator complex subunit SufB
2151	 58.89	0	1973296..1973655	-	119	148240487	ftrC	SynWH7803_2151	-	ferredoxin-thioredoxin reductase catalytic chain
2152	 60.80	0	1973867..1974940	+	357	148240488	fbaB	SynWH7803_2152	-	fructose-bisphosphate aldolase
2153	 63.81	0	1974982..1975647	+	221	148240489	-	SynWH7803_2153	-	transcriptional regulator
2154	 64.04	0	1975644..1976024	+	126	148240490	-	SynWH7803_2154	-	hypothetical protein
2155	 62.61	0	1976085..1976675	+	196	148240491	-	SynWH7803_2155	-	putative phycoerythrin linker protein CpeS-like protein
2156	 59.42	0	1976768..1977526	+	252	148240492	cpcG1	SynWH7803_2156	-	phycobilisome rod-core linker polypeptide cpcG (L-RC 27.8)
2157	 61.62	0	1977685..1978755	+	356	148240493	-	SynWH7803_2157	-	hypothetical protein
2158	 60.22	0	1978766..1978951	+	61	148240494	-	SynWH7803_2158	-	hypothetical protein
2159	 61.32	0	1978991..1980394	+	467	148240495	-	SynWH7803_2159	-	phosphatidylcholine-hydrolyzing phospholipase D family protein
2160	 47.08	-2	1980523..1981002	+	159	148240496	-	SynWH7803_2160	-	hypothetical protein
2161	 57.10	0	1981212..1981964	+	250	148240497	-	SynWH7803_2161	-	hydrolase of the alpha/beta-hydrolase fold
2162	 62.91	0	1981939..1982364	+	141	148240498	-	SynWH7803_2162	-	hypothetical protein
2163	 53.33	-1	1982371..1982610	-	79	148240499	-	SynWH7803_2163	-	hypothetical protein
2164	 62.51	0	1982722..1984380	+	552	148240500	pmg	SynWH7803_2164	-	phosphoglucomutase
2165	 55.10	-1	1984432..1984725	-	97	148240501	-	SynWH7803_2165	-	hypothetical protein
2166	 56.25	0	1984722..1988129	-	1135	148240502	-	SynWH7803_2166	-	RND family multidrug efflux protein
2167	 59.15	0	1988141..1989151	-	336	148240503	-	SynWH7803_2167	-	hypothetical protein
2168	 61.47	0	1989339..1991552	+	737	148240504	-	SynWH7803_2168	-	fused recombination factor protein RarA/unknown domain-containing protein
2169	 61.43	0	1991623..1992252	-	209	148240505	-	SynWH7803_2169	-	hypothetical protein
2170	 60.81	0	1992417..1992911	-	164	148240506	-	SynWH7803_2170	-	hypothetical protein
2171	 62.16	0	1992938..1993603	-	221	148240507	-	SynWH7803_2171	-	4'-phosphopantetheinyl transferase related protein
2172	 55.49	0	1993602..1994075	+	157	148240508	bcp	SynWH7803_2172	-	peroxiredoxin
2173	 61.82	0	1994068..1994748	-	226	148240509	-	SynWH7803_2173	-	transcriptional regulator
2174	 58.27	0	1994753..1995526	-	257	148240510	cysH	SynWH7803_2174	-	phosphoadenosine phosphosulfate reductase (PAPS reductase)
2175	 61.48	0	1995596..1996771	+	391	148240511	ndh	SynWH7803_2175	-	NADH dehydrogenase, FAD-containing subunit
2176	 62.86	0	1996768..1998474	+	568	148240512	hflX	SynWH7803_2176	-	GTP-binding protein; HflX
2177	 62.06	0	1998467..2000269	+	600	148240513	citT	SynWH7803_2177	-	di/tricarboxylate transporter
2178	 59.52	0	2000266..2001678	+	470	148240514	ktrB/ntpJ	SynWH7803_2178	-	Trk family sodium transporter
2179	 58.44	0	2001703..2002407	+	234	148240515	trkA	SynWH7803_2179	-	K+ transport system, NAD-binding component
2180	 65.98	+1	2002421..2003584	+	387	148240516	anmK	SynWH7803_2180	-	anhydro-N-acetylmuramic acid kinase
2181	 65.11	0	2003585..2003905	-	106	148240517	-	SynWH7803_2181	-	hypothetical protein
2182	 63.81	0	2004072..2004386	+	104	148240518	-	SynWH7803_2182	-	hypothetical protein
2183	 58.33	0	2004485..2004712	+	75	148240519	-	SynWH7803_2183	-	hypothetical protein
2184	 60.94	0	2004690..2004881	-	63	148240520	-	SynWH7803_2184	-	hypothetical protein
2185	 59.92	0	2004910..2006658	+	582	148240521	uup	SynWH7803_2185	-	ABC transporter ATPase
2186	 58.89	0	2006774..2006953	+	59	148240522	-	SynWH7803_2186	-	hypothetical protein
2187	 61.36	0	2006954..2008141	-	395	148240523	degQ	SynWH7803_2187	-	periplasmic trypsin-like serine protease
2188	 57.47	0	2008323..2008583	+	86	148240524	-	SynWH7803_2188	-	hypothetical protein
2189	 63.45	0	2008682..2009023	+	113	148240525	-	SynWH7803_2189	-	hypothetical protein
2190	 62.58	0	2009305..2011776	+	823	148240526	-	SynWH7803_2190	-	HrpA-like helicase
2191	 61.22	0	2011845..2011991	+	48	148240527	hli	SynWH7803_2191	-	high light inducible protein
2192	 61.02	0	2012097..2012273	+	58	148240528	-	SynWH7803_2192	-	hypothetical protein
2193	 59.72	0	2012263..2013414	+	383	148240529	xseA	SynWH7803_2193	-	exonuclease VII large subunit
2194	 53.19	-1	2013460..2013741	+	93	148240530	xseB	SynWH7803_2194	-	exonuclease VII small subunit
2195	 51.85	-1	2013734..2014111	+	125	148240531	-	SynWH7803_2195	-	hypothetical protein
2196	 56.90	0	2014128..2014475	-	115	148240532	-	SynWH7803_2196	-	hypothetical protein
2197	 49.62	-2	2014526..2015458	-	310	148240533	-	SynWH7803_2197	-	ribonuclease BN-like family protein
2198	 59.45	0	2021531..2022334	-	267	148240534	-	SynWH7803_2198	-	inositol monophosphatase family protein
2199	 56.97	0	2022349..2023998	-	549	148240535	tolC	SynWH7803_2199	-	Outer membrane efflux protein
2200	 59.30	0	2024089..2025486	-	465	148240536	-	SynWH7803_2200	-	Fe-S oxidoreductase
2201	 58.89	0	2025506..2026366	-	286	148240537	uppP	SynWH7803_2201	-	undecaprenyl pyrophosphate phosphatase
2202	 60.83	0	2026514..2027233	+	239	148240538	-	SynWH7803_2202	-	hypothetical protein
2203	 56.61	0	2027348..2027725	+	125	148240539	psbU	SynWH7803_2203	-	photosystem II complex extrinsic protein precursor U
2204	 61.50	0	2027779..2029461	+	560	148240540	nadB	SynWH7803_2204	-	L-aspartate oxidase
2205	 58.07	0	2029483..2030424	-	313	148240541	-	SynWH7803_2205	-	hypothetical protein
2206	 60.55	0	2030495..2031901	+	468	148240542	-	SynWH7803_2206	-	2-methylthioadenine synthetase
2207	 60.23	0	2031898..2033124	+	408	148240543	-	SynWH7803_2207	-	major facilitator superfamily permease
2208	 57.14	0	2033360..2034934	+	524	148240544	-	SynWH7803_2208	-	Fe-S oxidoreductase
2209	 60.00	0	2034960..2035334	-	124	148240545	-	SynWH7803_2209	-	hypothetical protein
2210	 59.48	0	2035359..2036540	-	393	148240546	-	SynWH7803_2210	-	hypothetical protein
2211	 64.05	0	2036743..2037429	-	228	148240547	ribD	SynWH7803_2211	-	pyrimidine reductase, riboflavin biosynthesis
2212	 60.59	0	2037442..2038362	-	306	148240548	-	SynWH7803_2212	-	6-pyruvoyl-tetrahydropterin synthase
2213	 61.98	0	2038414..2038989	+	191	148240549	aroK	SynWH7803_2213	-	shikimate kinase
2214	 60.98	0	2038993..2039256	-	87	148240550	-	SynWH7803_2214	-	hypothetical protein
2215	 62.90	0	2039288..2039977	+	229	148240551	-	SynWH7803_2215	-	hypothetical protein
2216	 62.55	0	2039946..2040674	-	242	148240552	gst	SynWH7803_2216	-	glutathione S-transferase
2217	 59.90	0	2040734..2040940	+	68	148240553	-	SynWH7803_2217	-	hypothetical protein
2218	 61.94	0	2040942..2041364	+	140	148240554	rbfA	SynWH7803_2218	-	ribosome-binding factor A
2219	 64.88	0	2041378..2043003	+	541	148240555	-	SynWH7803_2219	-	beta-galactosidase
2220	 63.61	0	2043040..2044248	+	402	148240556	-	SynWH7803_2220	-	TPR repeat-containing glycosyl transferase
2221	 63.74	0	2044245..2045063	+	272	148240557	hemD	SynWH7803_2221	-	uroporphyrinogen-III synthase
2222	 63.09	0	2045033..2045395	-	120	148240558	-	SynWH7803_2222	-	hypothetical protein
2223	 59.33	0	2045610..2046059	-	149	148240559	-	SynWH7803_2223	-	hypothetical protein
2224	 61.01	0	2046064..2047530	-	488	148240560	-	SynWH7803_2224	-	zeta-carotene desaturase
2225	 58.52	0	2047601..2047993	+	130	148240561	-	SynWH7803_2225	-	hypothetical protein
2226	 62.62	0	2048057..2048476	+	139	148240562	-	SynWH7803_2226	-	hypothetical protein
2227	 65.42	+1	2048478..2049683	+	401	148240563	-	SynWH7803_2227	-	hypothetical protein
2228	 62.68	0	2049680..2049955	+	91	148240564	-	SynWH7803_2228	-	hypothetical protein
2229	 64.77	0	2049891..2050838	-	315	148240565	-	SynWH7803_2229	-	nucleoside-diphosphate sugar epimerase
2230	 64.32	0	2050871..2052148	-	425	148240566	-	SynWH7803_2230	-	Na+/H+ antiporter
2231	 64.73	0	2052182..2052439	+	85	148240567	-	SynWH7803_2231	-	hypothetical protein
2232	 64.62	0	2052418..2054514	-	698	148240568	-	SynWH7803_2232	-	hypothetical protein
2233	 62.15	0	2054514..2055221	-	235	148240569	dnaJ	SynWH7803_2233	-	DnaJ-class molecular chaperone
2234	 65.12	0	2055227..2056195	-	322	148240570	cysK	SynWH7803_2234	-	cysteine synthase
2235	 60.46	0	2056396..2058264	-	622	148240571	-	SynWH7803_2235	-	porin, P stress induced
2236	 58.83	0	2058453..2060225	-	590	148240572	-	SynWH7803_2236	-	porin, P stress induced
2237	 62.22	0	2060440..2062104	+	554	148240573	-	SynWH7803_2237	-	hypothetical protein
2238	 63.03	0	2062351..2063946	+	531	148240574	-	SynWH7803_2238	-	glycosyl transferase family protein
2239	 60.51	0	2064063..2065118	-	351	148240575	psbD	SynWH7803_2239	-	photosystem II D2 protein
2240	 57.95	0	2065274..2065537	+	87	148240576	-	SynWH7803_2240	-	hypothetical protein
2241	 63.26	0	2065543..2066247	+	234	148240577	-	SynWH7803_2241	-	ABC-type system, ATPase component
2242	 59.90	0	2066657..2067454	+	265	148240578	-	SynWH7803_2242	-	two-component system response regulator
2243	 62.26	0	2067456..2068430	-	324	148240579	holB	SynWH7803_2243	-	DNA polymerase III subunit delta'
2244	 63.40	0	2068434..2069075	-	213	148240580	tmk	SynWH7803_2244	-	thymidylate kinase
2245	 64.80	0	2069078..2071381	-	767	148240581	copA	SynWH7803_2245	-	copper-transporting ATPase
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.