IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1891	 62.24	0	1732896..1733663	-	255	148240227	pspA	SynWH7803_1891	-	Phage shock protein A
1892	 67.59	+1	1733747..1734289	+	180	148240228	-	SynWH7803_1892	-	hypothetical protein
1893	 65.17	0	1734283..1737231	-	982	148240229	-	SynWH7803_1893	-	glycosyltransferase of family UDP-glucose:tetrahydrobiopterin glucosyltransferase
1894	 64.07	0	1737228..1738190	-	320	148240230	-	SynWH7803_1894	-	DMT family permease
1895	 64.33	0	1738244..1739056	+	270	148240231	sppA	SynWH7803_1895	-	periplasmic serine proteases (ClpP class)
1896	 64.83	0	1739053..1739433	+	126	148240232	aroH	SynWH7803_1896	-	chorismate mutase
1897	 59.90	0	1739532..1740122	+	196	148240233	-	SynWH7803_1897	-	hypothetical protein
1898	 66.67	+1	1740177..1740314	+	45	148240234	rpmH	SynWH7803_1898	-	50S ribosomal protein L34
1899	 61.36	0	1740339..1740734	+	131	148240235	rnpA	SynWH7803_1899	-	ribonuclease P protein component
1900	 60.65	0	1740731..1741162	+	143	148240236	-	SynWH7803_1900	-	hypothetical protein
1901	 59.98	0	1741238..1742389	+	383	148240237	yidC	SynWH7803_1901	-	putative inner membrane protein translocase component YidC
1902	 61.44	0	1742386..1742940	+	184	148240238	-	SynWH7803_1902	-	metal-binding protein
1903	 66.00	+1	1742933..1744432	+	499	148240239	-	SynWH7803_1903	-	AAA family ATPase
1904	 63.58	0	1744505..1744666	+	53	148240240	-	SynWH7803_1904	-	hypothetical protein
1905	 64.08	0	1744725..1746002	+	425	148240241	serS	SynWH7803_1905	-	seryl-tRNA synthetase
1906	 63.45	0	1746022..1747110	+	362	148240242	-	SynWH7803_1906	-	membrane-associated Zn-dependent protease
1907	 64.03	0	1747154..1747456	+	100	148240243	rpsN	SynWH7803_1907	-	30S ribosomal protein S14
1908	 62.70	0	1747618..1749783	+	721	148240244	pnp	SynWH7803_1908	-	polynucleotide phosphorylase/polyadenylase
1909	 65.02	0	1749796..1750707	-	303	148240245	cysQ	SynWH7803_1909	-	3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
1910	 67.01	+1	1750731..1751597	+	288	148240246	-	SynWH7803_1910	-	tetrapyrrole methylase family protein
1911	 64.58	0	1751608..1751847	+	79	148240247	-	SynWH7803_1911	-	hypothetical protein
1912	 64.15	0	1751849..1752604	-	251	148240248	-	SynWH7803_1912	-	hypothetical protein
1913	 54.42	-1	1752848..1753141	-	97	148240249	-	SynWH7803_1913	-	hypothetical protein
1914	 51.02	-1	1754158..1754649	-	163	148240250	-	SynWH7803_1914	-	hypothetical protein
1915	 49.45	-2	1755042..1755953	-	303	148240251	-	SynWH7803_1915	-	hypothetical protein
1916	 57.36	0	1756212..1756469	+	85	148240252	-	SynWH7803_1916	-	hypothetical protein
1917	 59.56	0	1756506..1756688	+	60	148240253	-	SynWH7803_1917	-	hypothetical protein
1918	 53.17	-1	1756999..1757865	-	288	148240254	-	SynWH7803_1918	-	hypothetical protein
1919	 56.90	0	1758034..1758330	-	98	148240255	-	SynWH7803_1919	-	hypothetical protein
1920	 53.80	-1	1758711..1759052	-	113	148240256	-	SynWH7803_1920	-	hypothetical protein
1921	 63.43	0	1759130..1759654	-	174	148240257	-	SynWH7803_1921	-	hypothetical protein
1922	 57.97	0	1759666..1759872	-	68	148240258	-	SynWH7803_1922	-	hypothetical protein
1923	 59.07	0	1759946..1760182	+	78	148240259	-	SynWH7803_1923	-	hypothetical protein
1924	 61.60	0	1760186..1760422	-	78	148240260	-	SynWH7803_1924	-	hypothetical protein
1925	 62.78	0	1760505..1760813	-	102	148240261	-	SynWH7803_1925	-	hypothetical protein
1926	 58.06	0	1760960..1761145	-	61	148240262	-	SynWH7803_1926	-	hypothetical protein
1927	 62.47	0	1761224..1762153	-	309	148240263	-	SynWH7803_1927	-	glutamyl-tRNA synthetase-related protein
1928	 58.70	0	1762173..1762448	-	91	148240264	hup	SynWH7803_1928	-	DNA-binding protein HU
1929	 67.26	+1	1762603..1763277	-	224	148240265	-	SynWH7803_1929	-	hypothetical protein
1930	 64.35	0	1763437..1765419	+	660	148240266	-	SynWH7803_1930	-	alpha-glucosidase
1931	 65.03	0	1765598..1767001	+	467	148240267	-	SynWH7803_1931	-	Na+/galactoside symporter
1932	 64.47	0	1766998..1767771	+	257	148240268	-	SynWH7803_1932	-	ABC-type transport system, permease component
1933	 65.71	+1	1767784..1768200	+	138	148240269	-	SynWH7803_1933	-	hypothetical protein
1934	 68.52	+1	1768300..1769271	+	323	148240270	-	SynWH7803_1934	-	hypothetical protein
1935	 66.67	+1	1769271..1769882	+	203	148240271	-	SynWH7803_1935	-	hypothetical protein
1936	 57.79	0	1769991..1771724	-	577	148240272	cphA	SynWH7803_1936	-	putative cyanophycin synthetase
1937	 64.02	0	1772032..1772220	+	62	148240273	-	SynWH7803_1937	-	hypothetical protein
1938	 61.83	0	1772636..1773649	+	337	148240274	-	SynWH7803_1938	-	hypothetical protein
1939	 57.35	0	1773689..1775137	-	482	148240275	-	SynWH7803_1939	-	TPR repeat-containing protein
1940	 46.51	-2	1775282..1776571	+	429	148240276	-	SynWH7803_1940	-	TPR repeat-containing protein
1941	 47.56	-2	1776583..1777362	+	259	148240277	-	SynWH7803_1941	-	hypothetical protein
1942	 68.03	+1	1777578..1778309	-	243	148240278	pyrF	SynWH7803_1942	-	orotidine 5'-phosphate decarboxylase
1943	 62.35	0	1778286..1778795	+	169	148240279	-	SynWH7803_1943	-	cupin, RmlC-type superfamily protein
1944	 61.40	0	1778918..1779145	+	75	148240280	-	SynWH7803_1944	-	hypothetical protein
1945	 58.64	0	1779145..1779555	+	136	148240281	-	SynWH7803_1945	-	hypothetical protein
1946	 65.70	+1	1779545..1780789	-	414	148240282	tyrS	SynWH7803_1946	-	tyrosyl-tRNA synthetase
1947	 59.63	0	1780831..1781157	-	108	148240283	-	SynWH7803_1947	-	hypothetical protein
1948	 67.08	+1	1781283..1782008	+	241	148240284	-	SynWH7803_1948	-	two-component system response regulator
1949	 69.28	+1	1782043..1782615	+	190	148240285	-	SynWH7803_1949	-	hypothetical protein
1950	 67.52	+1	1782620..1783207	+	195	148240286	-	SynWH7803_1950	-	hypothetical protein
1951	 66.87	+1	1783245..1784726	+	493	148240287	pepA	SynWH7803_1951	-	leucyl aminopeptidase
1952	 65.06	0	1784751..1784999	+	82	148240288	-	SynWH7803_1952	-	hypothetical protein
1953	 60.66	0	1784996..1785178	-	60	148240289	-	SynWH7803_1953	-	hypothetical protein
1954	 63.52	0	1785335..1785970	-	211	148240290	msrA	SynWH7803_1954	-	peptide methionine sulfoxide reductase
1955	 66.08	+1	1785970..1787163	-	397	148240291	lpxB	SynWH7803_1955	-	lipid-A-disaccharide synthase
1956	 64.13	0	1787163..1787990	-	275	148240292	lpxA	SynWH7803_1956	-	UDP-N-acetylglucosamine acyltransferase
1957	 61.49	0	1788020..1788463	-	147	148240293	fabZ	SynWH7803_1957	-	(3R)-hydroxymyristoyl-ACP dehydratase
1958	 67.13	+1	1788496..1789350	-	284	148240294	lpxC	SynWH7803_1958	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1959	 60.17	0	1789350..1791644	-	764	148240295	-	SynWH7803_1959	-	outer membrane protein / surface antigene
1960	 60.16	0	1791691..1792443	-	250	148240296	purC	SynWH7803_1960	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1961	 66.67	+1	1792440..1793444	-	334	148240297	-	SynWH7803_1961	-	hypothetical protein
1962	 68.03	+1	1793546..1794862	+	438	148240298	purD	SynWH7803_1962	-	phosphoribosylamine--glycine ligase
1963	 60.61	0	1794887..1796932	+	681	148240299	nblS	SynWH7803_1963	-	two-component system sensor histidine kinase NblS
1964	 57.76	0	1796933..1798471	-	512	148240300	kaiC	SynWH7803_1964	-	circadian clock protein KaiC
1965	 54.17	-1	1798538..1798897	-	119	148240301	kaiB	SynWH7803_1965	-	circadian clock protein KaiB
1966	 60.59	0	1798894..1799781	-	295	148240302	kaiA	SynWH7803_1966	-	circadian clock protein KaiA
1967	 60.00	0	1799908..1800282	+	124	148240303	rplU	SynWH7803_1967	-	50S ribosomal protein L21
1968	 61.11	0	1800326..1800595	+	89	148240304	rpmA	SynWH7803_1968	-	50S ribosomal protein L27
1969	 61.47	0	1800608..1801069	-	153	148240305	-	SynWH7803_1969	-	hypothetical protein
1970	 59.42	0	1801078..1801836	-	252	148240306	-	SynWH7803_1970	-	putative methyltransferase
1971	 68.44	+1	1801916..1802818	+	300	148240307	truB	SynWH7803_1971	-	tRNA pseudouridine synthase B
1972	 63.44	0	1802872..1803615	+	247	148240308	-	SynWH7803_1972	-	hypothetical protein
1973	 66.67	+1	1803633..1807322	-	1229	148240309	-	SynWH7803_1973	-	hydantoinase B/oxoprolinase
1974	 65.31	+1	1807319..1808128	-	269	148240310	nagB	SynWH7803_1974	-	glucosamine-6-phosphate deaminase
1975	 65.53	+1	1808119..1809531	-	470	148240311	-	SynWH7803_1975	-	protein related to sporulation protein
1976	 64.30	0	1809620..1810591	+	323	148240312	rnz	SynWH7803_1976	-	ribonuclease Z
1977	 62.77	0	1810678..1811190	+	170	148240313	psbV	SynWH7803_1977	-	cytochrome c-550
1978	 64.10	0	1811277..1811666	-	129	148240314	-	SynWH7803_1978	-	hypothetical protein
1979	 59.33	0	1811768..1812067	-	99	148240315	petF	SynWH7803_1979	-	ferredoxin
1980	 65.55	+1	1812209..1813102	-	297	148240316	prmA	SynWH7803_1980	-	ribosomal protein L11 methyltransferase
1981	 62.26	0	1813102..1814688	-	528	148240317	serA	SynWH7803_1981	-	D-3-phosphoglycerate dehydrogenase
1982	 61.21	0	1814826..1815356	+	176	148240318	-	SynWH7803_1982	-	hypothetical protein
1983	 64.10	0	1815353..1816132	+	259	148240319	-	SynWH7803_1983	-	hypothetical protein
1984	 63.79	0	1816307..1817698	+	463	148240320	murD	SynWH7803_1984	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1985	 55.48	0	1817756..1818184	+	142	148240321	-	SynWH7803_1985	-	hypothetical protein
1986	 63.18	0	1818168..1818941	+	257	148240322	-	SynWH7803_1986	-	hypothetical protein
1987	 56.03	0	1818893..1819174	-	93	148240323	-	SynWH7803_1987	-	hypothetical protein
1988	 62.56	0	1819473..1819862	-	129	148240324	-	SynWH7803_1988	-	hypothetical protein
1989	 58.33	0	1819859..1820086	-	75	148240325	rpoZ	SynWH7803_1989	-	DNA-directed RNA polymerase subunit omega
1990	 62.46	0	1820112..1820396	-	94	148240326	-	SynWH7803_1990	-	hypothetical protein
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.