IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
102	 66.03	+1	102879..103820	+	313	148238438	-	SynWH7803_0102	-	glucose-1-phosphate thymidylyltransferase
103	 67.15	+1	103810..104427	+	205	148238439	rfbC	SynWH7803_0103	-	dTDP-4-dehydrorhamnose 3,5-epimerase
104	 71.40	+2	104424..105311	+	295	148238440	rfbD	SynWH7803_0104	-	putative dTDP-4-dehydrorhamnose reductase
105	 67.70	+1	105304..106653	+	449	148238441	-	SynWH7803_0105	-	sugar transferase
106	 57.03	0	106766..108073	+	435	148238442	-	SynWH7803_0106	-	Zn-dependent metalloprotease
107	 56.98	0	108146..109177	+	343	148238443	rfbB	SynWH7803_0107	-	dTDP-glucose-4,6-dehydratase
108	 45.27	-2	109338..109940	+	200	148238444	-	SynWH7803_0108	-	hypothetical protein
109	 46.70	-2	110048..111349	-	433	148238445	-	SynWH7803_0109	-	hypothetical protein
110	 54.51	-1	111312..111599	-	95	148238446	-	SynWH7803_0110	-	N-terminal part of GDP-fucose synthetase
111	 53.71	-1	111813..117053	-	1746	148238447	-	SynWH7803_0111	-	atypical alkaline phosphatase with phytase-like insertion
112	 47.02	-2	117737..118072	-	111	148238448	-	SynWH7803_0112	-	hypothetical protein
113	 60.47	0	118383..119414	-	343	148238449	wcaG	SynWH7803_0113	-	GDP-L fucose synthetase
114	 61.17	0	119419..120510	-	363	148238450	gmd	SynWH7803_0114	-	GDP-mannose 4,6-dehydratase
115	 64.47	0	120544..121770	-	408	148238451	-	SynWH7803_0115	-	glycosyl transferase family protein
116	 59.61	0	121767..122984	-	405	148238452	-	SynWH7803_0116	-	TPR repeat-containing protein
117	 54.91	-1	123150..123923	+	257	148238453	-	SynWH7803_0117	-	hypothetical protein
118	 59.85	0	123916..124854	+	312	148238454	-	SynWH7803_0118	-	glycosyltransferase family protein
119	 57.69	0	124866..126068	+	400	148238455	-	SynWH7803_0119	-	glycosyl transferase family protein
120	 55.41	-1	126335..127276	+	313	148238456	-	SynWH7803_0120	-	hypothetical protein
121	 56.65	0	127295..128512	+	405	148238457	-	SynWH7803_0121	-	glycosyl transferase family protein
122	 52.52	-1	128570..130174	+	534	148238458	-	SynWH7803_0122	-	hypothetical protein
123	 54.54	-1	129916..133428	+	1170	148238459	-	SynWH7803_0123	-	hypothetical protein
124	 58.06	0	133554..135644	+	696	148238460	-	SynWH7803_0124	-	glycosyl transferase family protein
125	 58.59	0	135608..137773	-	721	148238461	-	SynWH7803_0125	-	glycosyl transferase family protein
126	 59.46	0	137775..139523	+	582	148238462	-	SynWH7803_0126	-	TPR repeat-containing protein
127	 58.59	0	139590..140270	+	226	148238463	-	SynWH7803_0127	-	hypothetical protein
128	 53.80	-1	140267..143281	+	1004	148238464	-	SynWH7803_0128	-	ABC-type multidrug transport system, ATPase and permease components
129	 48.44	-2	143379..144530	+	383	148238465	-	SynWH7803_0129	-	multidrug resistance efflux pump
130	 55.11	-1	144555..145688	-	377	148238466	-	SynWH7803_0130	-	glycosyltransferase family protein
131	 56.83	0	145757..146884	+	375	148238467	-	SynWH7803_0131	-	glycosyltransferase family protein
132	 50.46	-2	146894..147757	-	287	148238468	-	SynWH7803_0132	-	hypothetical protein
133	 57.65	0	147760..149190	-	476	148238469	-	SynWH7803_0133	-	sulfotransferase
134	 56.39	0	149622..150779	+	385	148238470	-	SynWH7803_0134	-	hypothetical protein
135	 68.67	+1	150932..152077	+	381	148238471	-	SynWH7803_0135	-	glycosyl transferase family protein
136	 62.50	0	152145..152888	+	247	148238472	-	SynWH7803_0136	-	ABC-type polysaccharide/polyol phosphate transport system, ATPase component
137	 59.03	0	152888..153712	+	274	148238473	-	SynWH7803_0137	-	ABC-type polysaccharide/polyol phosphate export systems, permease component
138	 65.49	+1	153712..154812	+	366	148238474	-	SynWH7803_0138	-	glycosyl transferase family protein
139	 60.28	0	154785..156380	-	531	148238475	-	SynWH7803_0139	-	glycosyl transferase family protein
140	 59.84	0	156377..157357	-	326	148238476	-	SynWH7803_0140	-	glycosyl transferase family protein
141	 64.37	0	157511..160378	+	955	148238477	secA	SynWH7803_0141	-	preprotein translocase subunit SecA
142	 66.26	+1	160398..161141	-	247	148238478	cysE	SynWH7803_0142	-	Serine acetyltransferase
143	 67.27	+1	161197..162186	-	329	148238479	-	SynWH7803_0143	-	transcriptional regulator
144	 67.66	+1	162266..163072	+	268	148238480	-	SynWH7803_0144	-	putative carboxymethylenebutenolidase
145	 62.90	0	163069..163731	-	220	148238481	infC	SynWH7803_0145	-	translation initiation factor IF-3
146	 68.38	+1	163789..164721	-	310	148238482	miaA	SynWH7803_0146	-	tRNA delta(2)-isopentenylpyrophosphatetransferase
147	 60.98	0	164838..166805	+	655	148238483	gyrB	SynWH7803_0147	-	DNA gyrase subunit B
148	 70.50	+2	166805..167143	+	112	148238484	-	SynWH7803_0148	-	hypothetical protein
149	 64.68	0	167136..167537	+	133	148238485	-	SynWH7803_0149	-	hypothetical protein
150	 66.43	+1	167530..167946	+	138	148238486	crcB	SynWH7803_0150	-	hypothetical protein
151	 64.38	0	167912..168391	-	159	148238487	-	SynWH7803_0151	-	glutathione peroxidase
152	 63.79	0	168466..169890	+	474	148238488	mgtE	SynWH7803_0152	-	Mg/Co/Ni transporter MgtE
153	 63.67	0	169943..171010	+	355	148238489	rpoD	SynWH7803_0153	-	RNA polymerase sigma factor, sigma-70 family
154	 60.87	0	171026..172009	-	327	148238490	-	SynWH7803_0154	-	hypothetical protein
155	 67.40	+1	172006..172956	-	316	148238491	-	SynWH7803_0155	-	alpha/beta fold family hydrolase
156	 61.05	0	172946..176236	-	1096	148238492	-	SynWH7803_0156	-	RND family multidrug efflux protein
157	 58.80	0	176244..177362	-	372	148238493	-	SynWH7803_0157	-	hypothetical protein
158	 57.14	0	177480..177794	-	104	148238494	-	SynWH7803_0158	-	hypothetical protein
159	 61.84	0	177810..178037	+	75	148238495	-	SynWH7803_0159	-	hypothetical protein
160	 60.57	0	178044..178568	-	174	148238496	-	SynWH7803_0160	-	hypothetical protein
161	 59.55	0	178784..179317	-	177	148238497	-	SynWH7803_0161	-	hypothetical protein
162	 65.86	+1	179378..180496	+	372	148238498	-	SynWH7803_0162	-	hypothetical protein
163	 64.89	0	180496..181623	+	375	148238499	mutY	SynWH7803_0163	-	A/G-specific DNA glycosylase MutY
164	 54.99	-1	181607..183190	-	527	148238500	-	SynWH7803_0164	-	hypothetical protein
165	 68.32	+1	183384..184412	+	342	148238501	csck	SynWH7803_0165	-	fructokinase
166	 67.66	+1	184415..185920	+	501	148238502	xylB	SynWH7803_0166	-	xylulose kinase
167	 66.98	+1	185901..186848	-	315	148238503	rbsK	SynWH7803_0167	-	ribokinase family sugar kinase
168	 66.67	+1	186861..187322	-	153	148238504	-	SynWH7803_0168	-	hypothetical protein
169	 61.84	0	187422..188852	+	476	148238505	ahcY	SynWH7803_0169	-	S-adenosyl-L-homocysteine hydrolase
170	 63.64	0	188913..189572	+	219	148238506	-	SynWH7803_0170	-	hypothetical protein
171	 63.91	0	189581..189979	-	132	148238507	ssb	SynWH7803_0171	-	single-strand DNA-binding protein
172	 64.86	0	190132..191184	+	350	148238508	mreB	SynWH7803_0172	-	rod shape-determining protein MreB
173	 66.93	+1	191190..191939	+	249	148238509	mreC	SynWH7803_0173	-	rod shape-determining protein
174	 66.46	+1	191973..192446	+	157	148238510	-	SynWH7803_0174	-	hypothetical protein
175	 66.06	+1	192443..193756	+	437	148238511	-	SynWH7803_0175	-	ABC-type sugar transport system, periplasmic component
176	 64.32	0	193868..194677	+	269	148238512	-	SynWH7803_0176	-	two-component system response regulator
177	 64.97	0	194732..196201	+	489	148238513	lysS	SynWH7803_0177	-	lysyl-tRNA synthetase
178	 66.67	+1	196281..196544	+	87	148238514	-	SynWH7803_0178	-	hypothetical protein
179	 63.17	0	196577..197062	-	161	148238515	-	SynWH7803_0179	-	hypothetical protein
180	 67.47	+1	197062..197310	-	82	148238516	-	SynWH7803_0180	-	hypothetical protein
181	 67.70	+1	197337..198308	-	323	148238517	-	SynWH7803_0181	-	hypothetical protein
182	 67.74	+1	198305..199516	-	403	148238518	-	SynWH7803_0182	-	hypothetical protein
183	 70.21	+2	199547..201634	+	695	148238519	-	SynWH7803_0183	-	serine/threonine protein kinase
184	 63.25	0	201653..202150	-	165	148238520	smpB	SynWH7803_0184	-	SsrA-binding protein
185	 69.49	+1	202215..203312	+	365	148238521	ruvB	SynWH7803_0185	-	Holliday junction DNA helicase B
186	 66.04	+1	203309..204109	+	266	148238522	-	SynWH7803_0186	-	TPR repeat-containing protein
187	 68.97	+1	204106..205278	+	390	148238523	-	SynWH7803_0187	-	zinc metallopeptidase
188	 67.10	+1	205275..205505	+	76	148238524	-	SynWH7803_0188	-	hypothetical protein
189	 67.78	+1	205510..206136	+	208	148238525	nblB	SynWH7803_0189	-	HEAT repeat-containing PBS lyase
190	 61.97	0	206326..207729	+	467	148238526	thiC	SynWH7803_0190	-	thiamine biosynthesis protein ThiC
191	 51.15	-1	207756..209747	-	663	148238527	-	SynWH7803_0191	-	hypothetical protein
192	 57.54	0	209752..210693	-	313	148238528	rfbB	SynWH7803_0192	-	dTDP-glucose 4,6-dehydratase (nucleoside-diphosphate-sugar epimerases)
193	 52.09	-1	210700..211392	-	230	148238529	-	SynWH7803_0193	-	glycosyl transferase family protein
194	 53.70	-1	211392..211715	-	107	148238530	-	SynWH7803_0194	-	hypothetical protein
195	 63.83	0	211894..213903	-	669	148238531	-	SynWH7803_0195	-	transketolase
196	 65.14	0	213954..215201	-	415	148238532	fabF	SynWH7803_0196	-	3-oxoacyl-[acyl-carrier-protein] synthase II
197	 57.61	0	215213..215455	-	80	148238533	acpP	SynWH7803_0197	-	acyl carrier protein
198	 64.23	0	215607..215852	+	81	148238534	psaC	SynWH7803_0198	-	photosystem I subunit VII
199	 67.30	+1	215935..217821	+	628	148238535	glmS	SynWH7803_0199	-	D-fructose-6-phosphate amidotransferase
200	 66.73	+1	217808..219274	-	488	148238536	manC	SynWH7803_0200	-	mannose-1-phosphate guanylyltransferase
201	 67.23	+1	219353..219880	-	175	148238537	rimM	SynWH7803_0201	-	16S rRNA-processing protein
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.