IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1376	 51.85	-1	1264599..1264868	-	89	148239712	-	SynWH7803_1376	-	hypothetical protein
1377	 62.78	0	1264991..1265737	+	248	148239713	-	SynWH7803_1377	-	two component system response regulator
1378	 57.56	0	1265685..1266233	-	182	148239714	-	SynWH7803_1378	-	hypothetical protein
1379	 60.00	0	1266237..1266521	-	94	148239715	-	SynWH7803_1379	-	hypothetical protein
1380	 58.12	0	1266576..1268096	-	506	148239716	crtH	SynWH7803_1380	-	carotenoid isomerase
1381	 59.20	0	1268154..1269050	-	298	148239717	-	SynWH7803_1381	-	cation efflux family protein
1382	 60.62	0	1269088..1270443	-	451	148239718	-	SynWH7803_1382	-	tRNA (uracil-5-)-methyltransferase Gid
1383	 62.60	0	1270517..1270639	-	40	148239719	pbsY	SynWH7803_1383	-	photosystem II protein Y
1384	 62.65	0	1270702..1271274	-	190	148239720	-	SynWH7803_1384	-	carbonic anhydrase
1385	 52.97	-1	1271521..1271907	+	128	148239721	-	SynWH7803_1385	-	two-component response transcriptional regulator
1386	 52.28	-1	1271873..1273033	-	386	148239722	-	SynWH7803_1386	-	two-component system sensor histidine kinase
1387	 57.14	0	1273023..1273400	-	125	148239723	-	SynWH7803_1387	-	PAS domain-containing protein
1388	 57.76	0	1273865..1274212	+	115	148239724	-	SynWH7803_1388	-	hypothetical protein
1389	 57.38	0	1274226..1274462	-	78	148239725	-	SynWH7803_1389	-	hypothetical protein
1390	 59.40	0	1274496..1275293	-	265	148239726	-	SynWH7803_1390	-	phosphohydrolase
1391	 60.74	0	1275302..1276414	-	370	148239727	-	SynWH7803_1391	-	ATPase
1392	 57.14	0	1276479..1276919	+	146	148239728	fur	SynWH7803_1392	-	ferric uptake regulator family protein
1393	 59.92	0	1276927..1277400	-	157	148239729	-	SynWH7803_1393	-	hypothetical protein
1394	 59.00	0	1277465..1277725	+	86	148239730	-	SynWH7803_1394	-	hypothetical protein
1395	 56.08	0	1277718..1278662	-	314	148239731	-	SynWH7803_1395	-	Fe-S oxidoreductase
1396	 59.58	0	1278695..1279456	-	253	148239732	-	SynWH7803_1396	-	hypothetical protein
1397	 58.22	0	1279535..1280446	+	303	148239733	-	SynWH7803_1397	-	hypothetical protein
1398	 59.21	0	1280400..1281620	-	406	148239734	stpA	SynWH7803_1398	-	glucosylglycerol-phosphate phosphatase (Salt tolerance protein A)
1399	 58.89	0	1281773..1283302	+	509	148239735	-	SynWH7803_1399	-	hypothetical protein
1400	 60.30	0	1283299..1285983	-	894	148239736	sbcC	SynWH7803_1400	-	putative ATPase involved in DNA repair
1401	 59.95	0	1285974..1287119	-	381	148239737	sbcD	SynWH7803_1401	-	DNA repair exonuclease
1402	 58.05	0	1287242..1288378	+	378	148239738	-	SynWH7803_1402	-	hypothetical protein
1403	 59.11	0	1288380..1288961	+	193	148239739	-	SynWH7803_1403	-	hypothetical protein
1404	 61.44	0	1288958..1289971	+	337	148239740	-	SynWH7803_1404	-	hypothetical protein
1405	 59.60	0	1290019..1291278	+	419	148239741	-	SynWH7803_1405	-	major facilitator superfamily sugar transporter
1406	 60.18	0	1291288..1291965	+	225	148239742	-	SynWH7803_1406	-	hypothetical protein
1407	 58.16	0	1292018..1293346	+	442	148239743	cysD	SynWH7803_1407	-	O-Acetyl homoserine sulfhydrylase
1408	 56.49	0	1293364..1294257	+	297	148239744	metA	SynWH7803_1408	-	homoserine O-succinyltransferase
1409	 55.14	-1	1294277..1294519	+	80	148239745	-	SynWH7803_1409	-	hypothetical protein
1410	 56.90	0	1294516..1294812	-	98	148239746	-	SynWH7803_1410	-	hypothetical protein
1411	 55.77	0	1294824..1295438	+	204	148239747	alkB	SynWH7803_1411	-	alkylated DNA repair protein
1412	 60.45	0	1295422..1296306	-	294	148239748	-	SynWH7803_1412	-	permease
1413	 59.72	0	1296405..1296620	+	71	148239749	-	SynWH7803_1413	-	hypothetical protein
1414	 56.85	0	1296605..1297348	-	247	148239750	-	SynWH7803_1414	-	ABC transporter for amino acids, ATP binding component
1415	 58.36	0	1297345..1298331	-	328	148239751	-	SynWH7803_1415	-	ABC-type amino acid transport system permease component
1416	 56.09	0	1298389..1298889	-	166	148239752	-	SynWH7803_1416	-	hypothetical protein
1417	 57.11	0	1298914..1299813	-	299	148239753	-	SynWH7803_1417	-	ABC-type amino acid transport system permease component
1418	 54.57	-1	1299810..1300826	-	338	148239754	-	SynWH7803_1418	-	ABC transporter, substrate binding protein for amino acids
1419	 56.97	0	1300971..1301300	+	109	148239755	-	SynWH7803_1419	-	hypothetical protein
1420	 58.51	0	1301305..1302897	-	530	148239756	-	SynWH7803_1420	-	MFS superfamily sulfate permease
1421	 60.24	0	1302928..1304157	-	409	148239757	-	SynWH7803_1421	-	FAD/FMN-containing dehydrogenase
1422	 58.56	0	1304208..1305329	+	373	148239758	cbiX	SynWH7803_1422	-	putative sirohydrochlorin cobaltochelatase
1423	 55.81	0	1305718..1305984	+	88	148239759	-	SynWH7803_1423	-	hypothetical protein
1424	 59.99	0	1305959..1307620	-	553	148239760	betA	SynWH7803_1424	-	choline dehydrogenase
1425	 59.75	0	1307922..1308890	-	322	148239761	-	SynWH7803_1425	-	L-asparaginase II
1426	 57.58	0	1308913..1309407	-	164	148239762	-	SynWH7803_1426	-	hypothetical protein
1427	 58.47	0	1309416..1309781	-	121	148239763	-	SynWH7803_1427	-	hypothetical protein
1428	 58.49	0	1309774..1310409	-	211	148239764	-	SynWH7803_1428	-	hypothetical protein
1429	 58.27	0	1310528..1313851	+	1107	148239765	carB	SynWH7803_1429	-	carbamoyl phosphate synthase large subunit
1430	 59.08	0	1313877..1314548	+	223	148239766	-	SynWH7803_1430	-	hypothetical protein
1431	 58.99	0	1314548..1315915	+	455	148239767	alsT	SynWH7803_1431	-	Na+/alanine symporter
1432	 54.11	-1	1315890..1316120	-	76	148239768	-	SynWH7803_1432	-	hypothetical protein
1433	 59.21	0	1316157..1317899	-	580	148239769	mdlB	SynWH7803_1433	-	ABC-type multidrug transport system, ATPase and permease components
1434	 58.08	0	1317939..1318136	+	65	148239770	-	SynWH7803_1434	-	S4-like RNA-binding protein
1435	 58.06	0	1318170..1318901	+	243	148239771	tpiA	SynWH7803_1435	-	triosephosphate isomerase
1436	 59.35	0	1318909..1319742	+	277	148239772	folP	SynWH7803_1436	-	dihydropteroate synthase
1437	 54.41	-1	1319786..1320193	+	135	148239773	-	SynWH7803_1437	-	hypothetical protein
1438	 55.38	-1	1320217..1324230	-	1337	148239774	chlH	SynWH7803_1438	-	magnesium chelatase
1439	 62.09	0	1324352..1325203	+	283	148239775	dapB	SynWH7803_1439	-	dihydrodipicolinate reductase
1440	 59.26	0	1325210..1325857	+	215	148239776	-	SynWH7803_1440	-	hypothetical protein
1441	 60.71	0	1325922..1326173	+	83	148239777	hli	SynWH7803_1441	-	high light inducible protein
1442	 57.01	0	1326190..1327452	+	420	148239778	ubiH	SynWH7803_1442	-	putative 2-octaprenyl-6-methoxyphenol hydroxylase
1443	 55.78	0	1327439..1327585	+	48	148239779	-	SynWH7803_1443	-	hypothetical protein
1444	 57.80	0	1327590..1328108	-	172	148239780	apt	SynWH7803_1444	-	adenine phosphoribosyltransferase
1445	 60.93	0	1328152..1328709	+	185	148239781	-	SynWH7803_1445	-	hypothetical protein
1446	 59.43	0	1328715..1329350	+	211	148239782	-	SynWH7803_1446	-	hypothetical protein
1447	 57.58	0	1329730..1330059	+	109	148239783	-	SynWH7803_1447	-	hypothetical protein
1448	 59.19	0	1330073..1330540	-	155	148239784	-	SynWH7803_1448	-	hypothetical protein
1449	 63.09	0	1330682..1331407	+	241	148239785	-	SynWH7803_1449	-	two-component system response regulator
1450	 61.85	0	1331417..1332766	+	449	148239786	-	SynWH7803_1450	-	two-component system sensor histidine kinase
1451	 57.26	0	1332836..1333792	+	318	148239787	-	SynWH7803_1451	-	hypothetical protein
1452	 56.50	0	1333812..1334057	+	81	148239788	-	SynWH7803_1452	-	hypothetical protein
1453	 60.53	0	1334068..1334295	+	75	148239789	-	SynWH7803_1453	-	hypothetical protein
1454	 58.87	0	1334331..1334471	-	46	148239790	-	SynWH7803_1454	-	hypothetical protein
1455	 56.77	0	1334492..1334683	-	63	148239791	-	SynWH7803_1455	-	hypothetical protein
1456	 60.26	0	1334760..1335305	-	181	148239792	-	SynWH7803_1456	-	nuclease-like protein
1457	 58.76	0	1335305..1335886	-	193	148239793	-	SynWH7803_1457	-	hypothetical protein
1458	 60.64	0	1336010..1338181	-	723	148239794	glnN	SynWH7803_1458	-	glutamate--ammonia ligase
1459	 57.89	0	1338229..1339482	-	417	148239795	proP	SynWH7803_1459	-	major facilitator superfamily permease / multidrug efflux transporter
1460	 61.68	0	1339479..1340501	-	340	148239796	gap3	SynWH7803_1460	-	glyceraldehyde-3-phosphate dehydrogenase
1461	 62.76	0	1340623..1340955	+	110	148239797	arsR	SynWH7803_1461	-	ArsR family transcriptional regulator
1462	 59.94	0	1340961..1341584	+	207	148239798	-	SynWH7803_1462	-	hypothetical protein
1463	 57.53	0	1341600..1342562	+	320	148239799	-	SynWH7803_1463	-	hypothetical protein
1464	 61.18	0	1342685..1342921	+	78	148239800	-	SynWH7803_1464	-	hypothetical protein
1465	 58.46	0	1342918..1343319	+	133	148239801	-	SynWH7803_1465	-	hypothetical protein
1466	 61.23	0	1343316..1343591	-	91	148239802	-	SynWH7803_1466	-	hypothetical protein
1467	 57.26	0	1343603..1343836	-	77	148239803	-	SynWH7803_1467	-	hypothetical protein
1468	 62.03	0	1343872..1344540	-	222	148239804	tesA	SynWH7803_1468	-	lysophospholipase L1 and related esterases
1469	 62.67	0	1344566..1346092	-	508	148239805	phnC	SynWH7803_1469	-	ABC-type phosphate/phosphonate transport system permease component
1470	 62.30	0	1346092..1346823	-	243	148239806	phnE	SynWH7803_1470	-	ABC-type phosphate/phosphonate transport system ATPase component
1471	 60.44	0	1346847..1347746	-	299	148239807	phnD	SynWH7803_1471	-	ABC-type phosphate/phosphonate transport system periplasmic component
1472	 61.66	0	1347790..1348968	-	392	148239808	aspC	SynWH7803_1472	-	aspartate aminotransferase
1473	 62.91	0	1349051..1349503	+	150	148239809	-	SynWH7803_1473	-	hypothetical protein
1474	 58.51	0	1349500..1350075	+	191	148239810	-	SynWH7803_1474	-	Uracil-DNA glycosylase
1475	 59.55	0	1350112..1351347	+	411	148239811	ispG	SynWH7803_1475	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.