IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1304	 47.21	-2	1198963..1199625	+	220	148239640	-	SynWH7803_1304	-	hypothetical protein
1305	 47.76	-2	1199750..1201309	-	519	148239641	-	SynWH7803_1305	-	major facilitator superfamily permease
1306	 42.36	-2	1201312..1202607	-	431	148239642	-	SynWH7803_1306	-	hypothetical protein
1307	 44.95	-2	1202713..1203375	+	220	148239643	-	SynWH7803_1307	-	hypothetical protein
1308	 44.99	-2	1203415..1204263	-	282	148239644	-	SynWH7803_1308	-	hypothetical protein
1309	 47.52	-2	1204409..1205296	-	295	148239645	-	SynWH7803_1309	-	hypothetical protein
1310	 55.18	-1	1205491..1206657	-	388	148239646	-	SynWH7803_1310	-	permease
1311	 57.63	0	1206654..1207295	-	213	148239647	-	SynWH7803_1311	-	ABC transporter ATP-binding component
1312	 57.25	0	1207379..1207792	-	137	148239648	-	SynWH7803_1312	-	hypothetical protein
1313	 55.20	-1	1207872..1208246	-	124	148239649	-	SynWH7803_1313	-	hypothetical protein
1314	 56.55	0	1208243..1210051	-	602	148239650	typA	SynWH7803_1314	-	GTP-binding protein TypA/BipA-like protein
1315	 58.91	0	1210116..1212680	-	854	148239651	-	SynWH7803_1315	-	peptidase
1316	 58.17	0	1212683..1213435	-	250	148239652	-	SynWH7803_1316	-	D-alanyl-D-alanine carboxypeptidase
1317	 56.40	0	1213545..1214918	+	457	148239653	chlP	SynWH7803_1317	-	geranylgeranyl hydrogenase ChlP
1318	 57.13	0	1214970..1217129	-	719	148239654	glyS	SynWH7803_1318	-	glycyl-tRNA synthetase beta subunit
1319	 58.57	0	1217248..1219014	+	588	148239655	sir	SynWH7803_1319	-	sulfite reductase subunit beta
1320	 61.67	0	1218936..1219715	-	259	148239656	ddpX	SynWH7803_1320	-	D-ala-D-ala dipeptidase
1321	 59.32	0	1219756..1222287	-	843	148239657	recG	SynWH7803_1321	-	ATP-dependent DNA helicase
1322	 61.21	0	1222039..1222203	+	54	148239658	-	SynWH7803_1322	-	hypothetical protein
1323	 61.99	0	1222355..1222525	+	56	148239659	-	SynWH7803_1323	-	hypothetical protein
1324	 42.04	-2	1222540..1223343	-	267	148239660	-	SynWH7803_1324	-	hypothetical protein
1325	 64.30	0	1223452..1223958	+	168	148239661	proA	SynWH7803_1325	-	gamma-glutamyl phosphate reductase
1326	 61.24	0	1223986..1224372	+	128	148239662	proA	SynWH7803_1326	-	gamma-glutamyl phosphate reductase
1327	 58.18	0	1224417..1225535	-	372	148239663	-	SynWH7803_1327	-	hypothetical protein
1328	 56.06	0	1225586..1226245	-	219	148239664	tsf	SynWH7803_1328	-	elongation factor Ts
1329	 58.19	0	1226333..1227052	-	239	148239665	rpsB	SynWH7803_1329	-	30S ribosomal protein S2
1330	 56.16	0	1227186..1228118	-	310	148239666	-	SynWH7803_1330	-	glycosyl transferase family protein
1331	 58.97	0	1228205..1228360	-	51	148239667	-	SynWH7803_1331	-	hypothetical protein
1332	 59.97	0	1228396..1229127	-	243	148239668	devA	SynWH7803_1332	-	DevA-like ABC transporter ATPase component
1333	 53.03	-1	1229127..1230299	-	390	148239669	devC	SynWH7803_1333	-	DevC-like ABC transporter permease component
1334	 59.82	0	1230296..1231201	-	301	148239670	devB	SynWH7803_1334	-	DevB-like secretion protein
1335	 58.23	0	1231201..1231935	-	244	148239671	pcyA	SynWH7803_1335	-	phycocyanobilin:ferredoxin oxidoreductase
1336	 59.56	0	1231960..1233267	+	435	148239672	-	SynWH7803_1336	-	Zn-dependent peptidase
1337	 60.77	0	1233264..1234517	+	417	148239673	-	SynWH7803_1337	-	Zn-dependent peptidase
1338	 58.77	0	1234509..1234736	-	75	148239674	-	SynWH7803_1338	-	hypothetical protein
1339	 61.43	0	1234793..1235365	+	190	148239675	-	SynWH7803_1339	-	hypothetical protein
1340	 57.99	0	1235362..1235868	+	168	148239676	lspA	SynWH7803_1340	-	lipoprotein signal peptidase
1341	 60.03	0	1235855..1238008	+	717	148239677	-	SynWH7803_1341	-	glycosyltransferase
1342	 61.72	0	1238016..1239611	+	531	148239678	-	SynWH7803_1342	-	membrane associated GTPase
1343	 58.03	0	1239708..1241096	-	462	148239679	-	SynWH7803_1343	-	pyridoxal-dependent decarboxylase family protein
1344	 61.93	0	1241194..1241721	+	175	148239680	tadA	SynWH7803_1344	-	tRNA-specific adenosine deaminase
1345	 58.06	0	1241663..1242859	-	398	148239681	-	SynWH7803_1345	-	alanine--glyoxylate transaminase
1346	 56.76	0	1242957..1243481	-	174	148239682	apcE	SynWH7803_1346	-	allophycocyanin subunit beta
1347	 56.12	0	1243695..1245116	+	473	148239683	glnAI	SynWH7803_1347	-	glutamine synthetase, glutamate ammonia ligase
1348	 60.00	0	1245126..1245395	-	89	148239684	-	SynWH7803_1348	-	hypothetical protein
1349	 57.70	0	1245545..1246615	+	356	148239685	-	SynWH7803_1349	-	SAM-dependent methyltransferase
1350	 58.49	0	1246683..1247000	+	105	148239686	-	SynWH7803_1350	-	hypothetical protein
1351	 55.10	-1	1247270..1247563	+	97	148239687	-	SynWH7803_1351	-	hypothetical protein
1352	 56.34	0	1247523..1247987	-	154	148239688	rsbW	SynWH7803_1352	-	anti-sigma regulatory factor
1353	 59.83	0	1248070..1248786	-	238	148239689	-	SynWH7803_1353	-	hypothetical protein
1354	 61.17	0	1248826..1249881	+	351	148239690	-	SynWH7803_1354	-	tRNA 2-selenouridine synthase
1355	 54.36	-1	1249910..1250299	+	129	148239691	psb28	SynWH7803_1355	-	photosystem II reaction center protein Psb28
1356	 58.06	0	1250296..1251375	+	359	148239692	-	SynWH7803_1356	-	permease
1357	 60.58	0	1251372..1252373	+	333	148239693	-	SynWH7803_1357	-	permease
1358	 56.94	0	1252475..1252957	-	160	148239694	-	SynWH7803_1358	-	flavin reductase-like domain-containing protein
1359	 53.24	-1	1253073..1253690	+	205	148239695	-	SynWH7803_1359	-	hypothetical protein
1360	 54.37	-1	1253735..1253986	-	83	148239696	-	SynWH7803_1360	-	hypothetical protein
1361	 58.61	0	1253967..1254959	-	330	148239697	secF	SynWH7803_1361	-	preprotein translocase subunit SecF
1362	 59.06	0	1254963..1256435	-	490	148239698	secD	SynWH7803_1362	-	preprotein translocase subunit SecD
1363	 57.83	0	1256439..1257422	-	327	148239699	pdhB	SynWH7803_1363	-	pyruvate dehydrogenase E1 component beta subunit
1364	 57.26	0	1257605..1257955	-	116	148239700	-	SynWH7803_1364	-	hypothetical protein
1365	 58.49	0	1257952..1258881	-	309	148239701	ispE	SynWH7803_1365	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1366	 59.19	0	1258878..1259720	-	280	148239702	ksgA	SynWH7803_1366	-	dimethyladenosine transferase
1367	 58.83	0	1259841..1260440	+	199	148239703	udk	SynWH7803_1367	-	uridine kinase
1368	 59.91	0	1260780..1261208	-	142	148239704	-	SynWH7803_1368	-	restriction endonuclease-like
1369	 60.00	0	1261227..1261451	-	74	148239705	-	SynWH7803_1369	-	hypothetical protein
1370	 55.45	0	1261490..1261810	-	106	148239706	-	SynWH7803_1370	-	hypothetical protein
1371	 61.29	0	1261813..1262556	-	247	148239707	pdxJ	SynWH7803_1371	-	pyridoxal phosphate biosynthetic protein PdxJ
1372	 61.56	0	1262762..1263388	+	208	148239708	plsC	SynWH7803_1372	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1373	 60.22	0	1263414..1263956	+	180	148239709	-	SynWH7803_1373	-	hypothetical protein
1374	 58.97	0	1264012..1264245	+	77	148239710	-	SynWH7803_1374	-	BolA-like protein
1375	 49.07	-2	1264273..1264596	+	107	148239711	-	SynWH7803_1375	-	glutaredoxin-like protein
1376	 51.85	-1	1264599..1264868	-	89	148239712	-	SynWH7803_1376	-	hypothetical protein
1377	 62.78	0	1264991..1265737	+	248	148239713	-	SynWH7803_1377	-	two component system response regulator
1378	 57.56	0	1265685..1266233	-	182	148239714	-	SynWH7803_1378	-	hypothetical protein
1379	 60.00	0	1266237..1266521	-	94	148239715	-	SynWH7803_1379	-	hypothetical protein
1380	 58.12	0	1266576..1268096	-	506	148239716	crtH	SynWH7803_1380	-	carotenoid isomerase
1381	 59.20	0	1268154..1269050	-	298	148239717	-	SynWH7803_1381	-	cation efflux family protein
1382	 60.62	0	1269088..1270443	-	451	148239718	-	SynWH7803_1382	-	tRNA (uracil-5-)-methyltransferase Gid
1383	 62.60	0	1270517..1270639	-	40	148239719	pbsY	SynWH7803_1383	-	photosystem II protein Y
1384	 62.65	0	1270702..1271274	-	190	148239720	-	SynWH7803_1384	-	carbonic anhydrase
1385	 52.97	-1	1271521..1271907	+	128	148239721	-	SynWH7803_1385	-	two-component response transcriptional regulator
1386	 52.28	-1	1271873..1273033	-	386	148239722	-	SynWH7803_1386	-	two-component system sensor histidine kinase
1387	 57.14	0	1273023..1273400	-	125	148239723	-	SynWH7803_1387	-	PAS domain-containing protein
1388	 57.76	0	1273865..1274212	+	115	148239724	-	SynWH7803_1388	-	hypothetical protein
1389	 57.38	0	1274226..1274462	-	78	148239725	-	SynWH7803_1389	-	hypothetical protein
1390	 59.40	0	1274496..1275293	-	265	148239726	-	SynWH7803_1390	-	phosphohydrolase
1391	 60.74	0	1275302..1276414	-	370	148239727	-	SynWH7803_1391	-	ATPase
1392	 57.14	0	1276479..1276919	+	146	148239728	fur	SynWH7803_1392	-	ferric uptake regulator family protein
1393	 59.92	0	1276927..1277400	-	157	148239729	-	SynWH7803_1393	-	hypothetical protein
1394	 59.00	0	1277465..1277725	+	86	148239730	-	SynWH7803_1394	-	hypothetical protein
1395	 56.08	0	1277718..1278662	-	314	148239731	-	SynWH7803_1395	-	Fe-S oxidoreductase
1396	 59.58	0	1278695..1279456	-	253	148239732	-	SynWH7803_1396	-	hypothetical protein
1397	 58.22	0	1279535..1280446	+	303	148239733	-	SynWH7803_1397	-	hypothetical protein
1398	 59.21	0	1280400..1281620	-	406	148239734	stpA	SynWH7803_1398	-	glucosylglycerol-phosphate phosphatase (Salt tolerance protein A)
1399	 58.89	0	1281773..1283302	+	509	148239735	-	SynWH7803_1399	-	hypothetical protein
1400	 60.30	0	1283299..1285983	-	894	148239736	sbcC	SynWH7803_1400	-	putative ATPase involved in DNA repair
1401	 59.95	0	1285974..1287119	-	381	148239737	sbcD	SynWH7803_1401	-	DNA repair exonuclease
1402	 58.05	0	1287242..1288378	+	378	148239738	-	SynWH7803_1402	-	hypothetical protein
1403	 59.11	0	1288380..1288961	+	193	148239739	-	SynWH7803_1403	-	hypothetical protein
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.