IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1232	 44.98	-2	1123324..1124139	-	271	148239568	ugpE	SynWH7803_1232	-	ABC-type sugar transport system, permease component
1233	 46.96	-2	1124136..1125008	-	290	148239569	ugpA	SynWH7803_1233	-	ABC-type sugar transport system, permease component
1234	 45.12	-2	1125005..1126285	-	426	148239570	ugpB	SynWH7803_1234	-	ABC-type sugar transport system, periplasmic component
1235	 43.06	-2	1126291..1127781	-	496	148239571	-	SynWH7803_1235	-	glycosyltransferase of family trehalose-phosphate synthase
1236	 51.81	-1	1127843..1128394	-	183	148239572	ccp	SynWH7803_1236	-	peroxiredoxin
1237	 54.85	-1	1128411..1128647	-	78	148239573	rpmB	SynWH7803_1237	-	50S ribosomal protein L28
1238	 49.26	-2	1128705..1130606	-	633	148239574	htpG	SynWH7803_1238	-	heat shock protein 90
1239	 44.44	-2	1130717..1130941	-	74	148239575	-	SynWH7803_1239	-	ferredoxin
1240	 58.44	0	1130966..1132144	-	392	148239576	hisZ	SynWH7803_1240	-	ATP phosphoribosyltransferase regulatory subunit
1241	 59.66	0	1132166..1133050	-	294	148239577	suhB	SynWH7803_1241	-	inositol-1-monophosphatase
1242	 59.56	0	1133050..1133415	-	121	148239578	petF	SynWH7803_1242	-	ferredoxin
1243	 54.17	-1	1133646..1134461	-	271	148239579	pstB	SynWH7803_1243	-	ABC-type phosphate transport system ATPase component
1244	 52.19	-1	1134500..1135411	-	303	148239580	pstA	SynWH7803_1244	-	ABC-type phosphate transport system permease component
1245	 51.90	-1	1135414..1136361	-	315	148239581	pstC	SynWH7803_1245	-	ABC-type phosphate transport system permease component
1246	 59.22	0	1136507..1138507	+	666	148239582	dnaK	SynWH7803_1246	-	chaperone protein DnaK
1247	 61.24	0	1138491..1139411	+	306	148239583	dnaJ	SynWH7803_1247	-	chaperone protein DnaJ
1248	 58.21	0	1139452..1139853	+	133	148239584	-	SynWH7803_1248	-	hypothetical protein
1249	 61.62	0	1139850..1140800	+	316	148239585	murQ	SynWH7803_1249	-	N-acetylmuramic acid-6-phosphate etherase
1250	 61.66	0	1140773..1141690	-	305	148239586	-	SynWH7803_1250	-	5'-methylthioadenosine phosphorylase
1251	 57.58	0	1141766..1142194	+	142	148239587	ppiB	SynWH7803_1251	-	peptidyl-prolyl cis-trans isomerase
1252	 57.75	0	1142182..1143864	-	560	148239588	ribA	SynWH7803_1252	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1253	 60.09	0	1143905..1144969	+	354	148239589	argC	SynWH7803_1253	-	N-acetyl-gamma-glutamyl-phosphate reductase
1254	 59.88	0	1144960..1145652	-	230	148239590	purN	SynWH7803_1254	-	phosphoribosylglycinamide formyltransferase
1255	 60.80	0	1145662..1146036	+	124	148239591	-	SynWH7803_1255	-	hypothetical protein
1256	 57.41	0	1146036..1147742	+	568	148239592	-	SynWH7803_1256	-	protease
1257	 57.10	0	1147724..1148632	+	302	148239593	-	SynWH7803_1257	-	N-acetylmuramoyl-L-alanine amidase
1258	 58.30	0	1148657..1149445	-	262	148239594	-	SynWH7803_1258	-	hypothetical protein
1259	 59.53	0	1149552..1151162	+	536	148239595	pgi	SynWH7803_1259	-	glucose-6-phosphate isomerase
1260	 59.95	0	1151169..1153805	-	878	148239596	leuS	SynWH7803_1260	-	leucyl-tRNA synthetase
1261	 57.21	0	1153860..1154081	-	73	148239597	-	SynWH7803_1261	-	hypothetical protein
1262	 59.98	0	1154109..1155215	+	368	148239598	dapF	SynWH7803_1262	-	diaminopimelate epimerase
1263	 62.61	0	1155202..1156383	+	393	148239599	nifS	SynWH7803_1263	-	cysteine desulfurase
1264	 61.06	0	1156428..1157123	+	231	148239600	-	SynWH7803_1264	-	hypothetical protein
1265	 59.50	0	1157169..1157684	+	171	148239601	-	SynWH7803_1265	-	hypothetical protein
1266	 59.95	0	1157681..1158991	+	436	148239602	dacB	SynWH7803_1266	-	D-alanyl-D-alanine carboxypeptidase
1267	 59.25	0	1158936..1159865	-	309	148239603	-	SynWH7803_1267	-	hypothetical protein
1268	 57.03	0	1159862..1160359	-	165	148239604	coaD	SynWH7803_1268	-	phosphopantetheine adenylyltransferase
1269	 57.27	0	1160418..1162376	+	652	148239605	uvrC	SynWH7803_1269	-	excinuclease ABC subunit C
1270	 61.06	0	1162373..1162675	+	100	148239606	-	SynWH7803_1270	-	hypothetical protein
1271	 55.91	0	1162678..1164165	+	495	148239607	-	SynWH7803_1271	-	deoxyribodipyrimidine photolyase-like protein protein
1272	 56.22	0	1164202..1164756	+	184	148239608	-	SynWH7803_1272	-	hypothetical protein
1273	 60.73	0	1164780..1165436	+	218	148239609	-	SynWH7803_1273	-	metal-dependent phosphoesterase
1274	 57.77	0	1165464..1166036	+	190	148239610	-	SynWH7803_1274	-	hypothetical protein
1275	 60.74	0	1166045..1169821	-	1258	148239611	cobN	SynWH7803_1275	-	aerobic cobaltochelatase CobN subunit
1276	 58.82	0	1169894..1170811	+	305	148239612	ilvE	SynWH7803_1276	-	branched-chain amino acid aminotransferase
1277	 55.17	-1	1170894..1174511	+	1205	148239613	metH	SynWH7803_1277	-	methionine synthase (5-methyltetrahydrofolate--homocysteine methyltransferase)
1278	 56.04	0	1174557..1174829	+	90	148239614	-	SynWH7803_1278	-	hypothetical protein
1279	 55.84	0	1174857..1175087	-	76	148239615	-	SynWH7803_1279	-	hypothetical protein
1280	 57.35	0	1175199..1175606	+	135	148239616	-	SynWH7803_1280	-	hypothetical protein
1281	 58.30	0	1175588..1176316	-	242	148239617	-	SynWH7803_1281	-	dehydrogenase
1282	 58.81	0	1176341..1177282	+	313	148239618	-	SynWH7803_1282	-	hypothetical protein
1283	 59.21	0	1177272..1178183	+	303	148239619	-	SynWH7803_1283	-	ATP adenylyltransferase
1284	 58.14	0	1178185..1178817	+	210	148239620	-	SynWH7803_1284	-	DNA-directed RNA polymerase specialized sigma subunit
1285	 57.38	0	1178799..1178981	-	60	148239621	-	SynWH7803_1285	-	hypothetical protein
1286	 54.53	-1	1179088..1180743	+	551	148239622	-	SynWH7803_1286	-	hypothetical protein
1287	 55.95	0	1180779..1181804	+	341	148239623	-	SynWH7803_1287	-	chaperone
1288	 55.35	-1	1182304..1182798	-	164	148239624	apcD	SynWH7803_1288	-	allophycocyanin subunit alpha
1289	 57.82	0	1182879..1184279	+	466	148239625	-	SynWH7803_1289	-	putative RNA methyltransferase
1290	 58.40	0	1184248..1186704	-	818	148239626	pheT	SynWH7803_1290	-	phenylalanyl-tRNA synthetase beta subunit
1291	 51.79	-1	1186832..1187026	+	64	148239627	rpmG	SynWH7803_1291	-	50S ribosomal protein L33
1292	 56.31	0	1187077..1187298	+	73	148239628	rpsR	SynWH7803_1292	-	30S ribosomal protein S18
1293	 58.92	0	1187410..1189359	+	649	148239629	-	SynWH7803_1293	-	exoribonuclease R/ribonuclease II
1294	 59.23	0	1189368..1189730	-	120	148239630	-	SynWH7803_1294	-	hypothetical protein
1295	 60.73	0	1189732..1190304	-	190	148239631	-	SynWH7803_1295	-	hypothetical protein
1296	 58.58	0	1190301..1191017	-	238	148239632	pgl	SynWH7803_1296	-	6-phosphogluconolactonase
1297	 57.08	0	1191028..1192446	-	472	148239633	gnd	SynWH7803_1297	-	6-phosphogluconate dehydrogenase
1298	 54.86	-1	1192534..1193829	-	431	148239634	glgC	SynWH7803_1298	-	glucose-1-phosphate adenylyltransferase
1299	 56.64	0	1193924..1195240	-	438	148239635	hemA	SynWH7803_1299	-	glutamyl-tRNA reductase
1300	 59.90	0	1195272..1196276	-	334	148239636	glpX	SynWH7803_1300	-	fructose 1,6-bisphosphatase II
1301	 56.29	0	1196420..1197103	+	227	148239637	-	SynWH7803_1301	-	ribulose-phosphate 3-epimerase
1302	 45.90	-2	1197474..1197656	+	60	148239638	-	SynWH7803_1302	-	hypothetical protein
1303	 55.66	0	1197703..1198665	-	320	148239639	ccmC	SynWH7803_1303	-	ABC-type transport system involved in cytochrome c biogenesis permease component
1304	 47.21	-2	1198963..1199625	+	220	148239640	-	SynWH7803_1304	-	hypothetical protein
1305	 47.76	-2	1199750..1201309	-	519	148239641	-	SynWH7803_1305	-	major facilitator superfamily permease
1306	 42.36	-2	1201312..1202607	-	431	148239642	-	SynWH7803_1306	-	hypothetical protein
1307	 44.95	-2	1202713..1203375	+	220	148239643	-	SynWH7803_1307	-	hypothetical protein
1308	 44.99	-2	1203415..1204263	-	282	148239644	-	SynWH7803_1308	-	hypothetical protein
1309	 47.52	-2	1204409..1205296	-	295	148239645	-	SynWH7803_1309	-	hypothetical protein
1310	 55.18	-1	1205491..1206657	-	388	148239646	-	SynWH7803_1310	-	permease
1311	 57.63	0	1206654..1207295	-	213	148239647	-	SynWH7803_1311	-	ABC transporter ATP-binding component
1312	 57.25	0	1207379..1207792	-	137	148239648	-	SynWH7803_1312	-	hypothetical protein
1313	 55.20	-1	1207872..1208246	-	124	148239649	-	SynWH7803_1313	-	hypothetical protein
1314	 56.55	0	1208243..1210051	-	602	148239650	typA	SynWH7803_1314	-	GTP-binding protein TypA/BipA-like protein
1315	 58.91	0	1210116..1212680	-	854	148239651	-	SynWH7803_1315	-	peptidase
1316	 58.17	0	1212683..1213435	-	250	148239652	-	SynWH7803_1316	-	D-alanyl-D-alanine carboxypeptidase
1317	 56.40	0	1213545..1214918	+	457	148239653	chlP	SynWH7803_1317	-	geranylgeranyl hydrogenase ChlP
1318	 57.13	0	1214970..1217129	-	719	148239654	glyS	SynWH7803_1318	-	glycyl-tRNA synthetase beta subunit
1319	 58.57	0	1217248..1219014	+	588	148239655	sir	SynWH7803_1319	-	sulfite reductase subunit beta
1320	 61.67	0	1218936..1219715	-	259	148239656	ddpX	SynWH7803_1320	-	D-ala-D-ala dipeptidase
1321	 59.32	0	1219756..1222287	-	843	148239657	recG	SynWH7803_1321	-	ATP-dependent DNA helicase
1322	 61.21	0	1222039..1222203	+	54	148239658	-	SynWH7803_1322	-	hypothetical protein
1323	 61.99	0	1222355..1222525	+	56	148239659	-	SynWH7803_1323	-	hypothetical protein
1324	 42.04	-2	1222540..1223343	-	267	148239660	-	SynWH7803_1324	-	hypothetical protein
1325	 64.30	0	1223452..1223958	+	168	148239661	proA	SynWH7803_1325	-	gamma-glutamyl phosphate reductase
1326	 61.24	0	1223986..1224372	+	128	148239662	proA	SynWH7803_1326	-	gamma-glutamyl phosphate reductase
1327	 58.18	0	1224417..1225535	-	372	148239663	-	SynWH7803_1327	-	hypothetical protein
1328	 56.06	0	1225586..1226245	-	219	148239664	tsf	SynWH7803_1328	-	elongation factor Ts
1329	 58.19	0	1226333..1227052	-	239	148239665	rpsB	SynWH7803_1329	-	30S ribosomal protein S2
1330	 56.16	0	1227186..1228118	-	310	148239666	-	SynWH7803_1330	-	glycosyl transferase family protein
1331	 58.97	0	1228205..1228360	-	51	148239667	-	SynWH7803_1331	-	hypothetical protein
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.