IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1171	 63.29	0	1069317..1069997	-	226	148239507	-	SynWH7803_1171	-	ICC-like phosphoesterase
1172	 61.38	0	1070085..1070273	+	62	148239508	-	SynWH7803_1172	-	hypothetical protein
1173	 59.78	0	1070355..1071428	+	357	148239509	-	SynWH7803_1173	-	hypothetical protein
1174	 59.07	0	1071452..1071688	-	78	148239510	-	SynWH7803_1174	-	hypothetical protein
1175	 58.29	0	1071776..1072372	+	198	148239511	-	SynWH7803_1175	-	hypothetical protein
1176	 58.22	0	1072369..1072581	+	70	148239512	-	SynWH7803_1176	-	hypothetical protein
1177	 57.41	0	1072569..1072730	-	53	148239513	-	SynWH7803_1177	-	hypothetical protein
1178	 60.14	0	1072815..1074284	-	489	148239514	-	SynWH7803_1178	-	porin-like protein
1179	 60.74	0	1074323..1075132	-	269	148239515	-	SynWH7803_1179	-	ABC transporter ATPase component
1180	 61.11	0	1075168..1075383	+	71	148239516	-	SynWH7803_1180	-	Zn-ribbon protein
1181	 61.43	0	1075380..1075799	-	139	148239517	-	SynWH7803_1181	-	NUDIX hydrolase
1182	 57.14	0	1075807..1076058	-	83	148239518	-	SynWH7803_1182	-	hypothetical protein
1183	 56.51	0	1076404..1076925	-	173	148239519	-	SynWH7803_1183	-	hypothetical protein
1184	 59.02	0	1076930..1077400	-	156	148239520	-	SynWH7803_1184	-	hypothetical protein
1185	 64.67	0	1077454..1078155	+	233	148239521	-	SynWH7803_1185	-	hypothetical protein
1186	 58.42	0	1078163..1078768	-	201	148239522	-	SynWH7803_1186	-	hypothetical protein
1187	 63.38	0	1078765..1079952	-	395	148239523	chrA	SynWH7803_1187	-	chromate transporter
1188	 62.28	0	1079980..1082370	-	796	148239524	-	SynWH7803_1188	-	putative ATP-dependent helicase
1189	 57.62	0	1082424..1082633	-	69	148239525	-	SynWH7803_1189	-	hypothetical protein
1190	 50.86	-1	1082692..1083678	+	328	148239526	-	SynWH7803_1190	-	hypothetical protein
1191	 56.16	0	1083675..1083950	+	91	148239527	-	SynWH7803_1191	-	hypothetical protein
1192	 60.01	0	1083977..1085524	+	515	148239528	speE	SynWH7803_1192	-	spermidine synthase
1193	 51.48	-1	1085623..1086129	+	168	148239529	-	SynWH7803_1193	-	hypothetical protein
1194	 61.13	0	1086126..1087823	-	565	148239530	lig	SynWH7803_1194	-	ATP-dependent DNA ligase
1195	 62.18	0	1087849..1088205	-	118	148239531	-	SynWH7803_1195	-	hypothetical protein
1196	 62.37	0	1088234..1089211	-	325	148239532	-	SynWH7803_1196	-	RNA processing exonuclease
1197	 57.72	0	1089293..1090891	+	532	148239533	-	SynWH7803_1197	-	putative multicopper oxidase
1198	 57.56	0	1090911..1091843	-	310	148239534	nadA	SynWH7803_1198	-	quinolinate synthetase
1199	 63.52	0	1091953..1092747	+	264	148239535	-	SynWH7803_1199	-	phosphoesterase
1200	 62.65	0	1092747..1093841	+	364	148239536	-	SynWH7803_1200	-	hypothetical protein
1201	 58.06	0	1094066..1094809	+	247	148239537	-	SynWH7803_1201	-	muramidase
1202	 61.07	0	1094842..1095645	-	267	148239538	-	SynWH7803_1202	-	hypothetical protein
1203	 60.67	0	1095681..1096913	+	410	148239539	-	SynWH7803_1203	-	hypothetical protein
1204	 58.51	0	1096885..1097988	-	367	148239540	aroB	SynWH7803_1204	-	3-dehydroquinate synthase
1205	 54.21	-1	1098060..1098950	+	296	148239541	-	SynWH7803_1205	-	ABC-type sugar transport systems, permease component
1206	 59.87	0	1098967..1100202	+	411	148239542	purK	SynWH7803_1206	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1207	 59.06	0	1100392..1100667	-	91	148239543	-	SynWH7803_1207	-	hypothetical protein
1208	 58.77	0	1100746..1100973	+	75	148239544	-	SynWH7803_1208	-	hypothetical protein
1209	 57.70	0	1100980..1102362	-	460	148239545	-	SynWH7803_1209	-	major facilitator superfamily permease
1210	 54.88	-1	1102398..1102694	-	98	148239546	clpS	SynWH7803_1210	-	ATP-dependent Clp protease adaptor
1211	 56.86	0	1102765..1102866	+	33	148239547	petN	SynWH7803_1211	-	cytochrome b6-f complex subunit PetN
1212	 59.22	0	1103007..1104416	+	469	148239548	-	SynWH7803_1212	-	hypothetical protein
1213	 57.12	0	1104407..1105087	-	226	161347491	-	SynWH7803_1213	-	Thf1-like protein
1214	 52.12	-1	1105168..1105758	+	196	148239550	clpP	SynWH7803_1214	-	ATP-dependent Clp protease proteolytic subunit
1215	 45.30	-2	1105827..1106060	-	77	148239551	-	SynWH7803_1215	-	hypothetical protein
1216	 56.95	0	1106103..1108016	-	637	148239552	ftsH	SynWH7803_1216	-	cell division protein FtsH
1217	 57.56	0	1108080..1109309	-	409	148239553	-	SynWH7803_1217	-	peptide ABC transporter permease
1218	 58.15	0	1109324..1111108	-	594	148239554	pykF	SynWH7803_1218	-	pyruvate kinase
1219	 57.88	0	1111165..1111494	+	109	148239555	-	SynWH7803_1219	-	MazG family pyrophosphatase
1220	 57.76	0	1111498..1111800	-	100	148239556	-	SynWH7803_1220	-	hypothetical protein
1221	 58.24	0	1111825..1112370	-	181	148239557	-	SynWH7803_1221	-	transcriptional regulator
1222	 60.01	0	1112425..1113957	-	510	148239558	ilvA	SynWH7803_1222	-	threonine dehydratase
1223	 57.36	0	1114035..1115978	+	647	148239559	dxs	SynWH7803_1223	-	1-deoxy-D-xylulose-5-phosphate synthase
1224	 58.14	0	1116030..1116287	-	85	148239560	psaK	SynWH7803_1224	-	photosystem I reaction center subunit X
1225	 56.01	0	1116355..1116645	-	96	148239561	-	SynWH7803_1225	-	hypothetical protein
1226	 57.41	0	1116645..1116968	-	107	148239562	-	SynWH7803_1226	-	hypothetical protein
1227	 49.05	-2	1117015..1118121	+	368	148239563	-	SynWH7803_1227	-	hypothetical protein
1228	 42.94	-2	1118150..1119169	-	339	148239564	sphX	SynWH7803_1228	-	ABC transporter, substrate binding protein, phosphate
1229	 41.90	-2	1119229..1120383	-	384	148239565	corA	SynWH7803_1229	-	Mg2+/Co2+ transporter
1230	 40.33	-2	1120461..1122332	-	623	148239566	-	SynWH7803_1230	-	hypothetical protein
1231	 46.19	-2	1122356..1123327	-	323	148239567	malK	SynWH7803_1231	-	ABC-type sugar transport system, ATPase component
1232	 44.98	-2	1123324..1124139	-	271	148239568	ugpE	SynWH7803_1232	-	ABC-type sugar transport system, permease component
1233	 46.96	-2	1124136..1125008	-	290	148239569	ugpA	SynWH7803_1233	-	ABC-type sugar transport system, permease component
1234	 45.12	-2	1125005..1126285	-	426	148239570	ugpB	SynWH7803_1234	-	ABC-type sugar transport system, periplasmic component
1235	 43.06	-2	1126291..1127781	-	496	148239571	-	SynWH7803_1235	-	glycosyltransferase of family trehalose-phosphate synthase
1236	 51.81	-1	1127843..1128394	-	183	148239572	ccp	SynWH7803_1236	-	peroxiredoxin
1237	 54.85	-1	1128411..1128647	-	78	148239573	rpmB	SynWH7803_1237	-	50S ribosomal protein L28
1238	 49.26	-2	1128705..1130606	-	633	148239574	htpG	SynWH7803_1238	-	heat shock protein 90
1239	 44.44	-2	1130717..1130941	-	74	148239575	-	SynWH7803_1239	-	ferredoxin
1240	 58.44	0	1130966..1132144	-	392	148239576	hisZ	SynWH7803_1240	-	ATP phosphoribosyltransferase regulatory subunit
1241	 59.66	0	1132166..1133050	-	294	148239577	suhB	SynWH7803_1241	-	inositol-1-monophosphatase
1242	 59.56	0	1133050..1133415	-	121	148239578	petF	SynWH7803_1242	-	ferredoxin
1243	 54.17	-1	1133646..1134461	-	271	148239579	pstB	SynWH7803_1243	-	ABC-type phosphate transport system ATPase component
1244	 52.19	-1	1134500..1135411	-	303	148239580	pstA	SynWH7803_1244	-	ABC-type phosphate transport system permease component
1245	 51.90	-1	1135414..1136361	-	315	148239581	pstC	SynWH7803_1245	-	ABC-type phosphate transport system permease component
1246	 59.22	0	1136507..1138507	+	666	148239582	dnaK	SynWH7803_1246	-	chaperone protein DnaK
1247	 61.24	0	1138491..1139411	+	306	148239583	dnaJ	SynWH7803_1247	-	chaperone protein DnaJ
1248	 58.21	0	1139452..1139853	+	133	148239584	-	SynWH7803_1248	-	hypothetical protein
1249	 61.62	0	1139850..1140800	+	316	148239585	murQ	SynWH7803_1249	-	N-acetylmuramic acid-6-phosphate etherase
1250	 61.66	0	1140773..1141690	-	305	148239586	-	SynWH7803_1250	-	5'-methylthioadenosine phosphorylase
1251	 57.58	0	1141766..1142194	+	142	148239587	ppiB	SynWH7803_1251	-	peptidyl-prolyl cis-trans isomerase
1252	 57.75	0	1142182..1143864	-	560	148239588	ribA	SynWH7803_1252	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1253	 60.09	0	1143905..1144969	+	354	148239589	argC	SynWH7803_1253	-	N-acetyl-gamma-glutamyl-phosphate reductase
1254	 59.88	0	1144960..1145652	-	230	148239590	purN	SynWH7803_1254	-	phosphoribosylglycinamide formyltransferase
1255	 60.80	0	1145662..1146036	+	124	148239591	-	SynWH7803_1255	-	hypothetical protein
1256	 57.41	0	1146036..1147742	+	568	148239592	-	SynWH7803_1256	-	protease
1257	 57.10	0	1147724..1148632	+	302	148239593	-	SynWH7803_1257	-	N-acetylmuramoyl-L-alanine amidase
1258	 58.30	0	1148657..1149445	-	262	148239594	-	SynWH7803_1258	-	hypothetical protein
1259	 59.53	0	1149552..1151162	+	536	148239595	pgi	SynWH7803_1259	-	glucose-6-phosphate isomerase
1260	 59.95	0	1151169..1153805	-	878	148239596	leuS	SynWH7803_1260	-	leucyl-tRNA synthetase
1261	 57.21	0	1153860..1154081	-	73	148239597	-	SynWH7803_1261	-	hypothetical protein
1262	 59.98	0	1154109..1155215	+	368	148239598	dapF	SynWH7803_1262	-	diaminopimelate epimerase
1263	 62.61	0	1155202..1156383	+	393	148239599	nifS	SynWH7803_1263	-	cysteine desulfurase
1264	 61.06	0	1156428..1157123	+	231	148239600	-	SynWH7803_1264	-	hypothetical protein
1265	 59.50	0	1157169..1157684	+	171	148239601	-	SynWH7803_1265	-	hypothetical protein
1266	 59.95	0	1157681..1158991	+	436	148239602	dacB	SynWH7803_1266	-	D-alanyl-D-alanine carboxypeptidase
1267	 59.25	0	1158936..1159865	-	309	148239603	-	SynWH7803_1267	-	hypothetical protein
1268	 57.03	0	1159862..1160359	-	165	148239604	coaD	SynWH7803_1268	-	phosphopantetheine adenylyltransferase
1269	 57.27	0	1160418..1162376	+	652	148239605	uvrC	SynWH7803_1269	-	excinuclease ABC subunit C
1270	 61.06	0	1162373..1162675	+	100	148239606	-	SynWH7803_1270	-	hypothetical protein
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.