IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1140	 62.64	0	1043774..1044121	-	115	148239476	-	SynWH7803_1140	-	hypothetical protein
1141	 60.78	0	1044219..1044473	+	84	148239477	purS	SynWH7803_1141	-	phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
1142	 62.23	0	1044470..1045123	+	217	148239478	purQ	SynWH7803_1142	-	phosphoribosylformylglycinamidine synthase domain-containing protein
1143	 62.37	0	1045127..1046104	+	325	148239479	-	SynWH7803_1143	-	hypothetical protein
1144	 60.21	0	1046114..1047244	+	376	148239480	-	SynWH7803_1144	-	hypothetical protein
1145	 62.10	0	1047299..1048372	-	357	148239481	-	SynWH7803_1145	-	fructose-1,6-bisphosphate aldolase
1146	 63.26	0	1048459..1049544	-	361	148239482	mviM	SynWH7803_1146	-	dehydrogenase
1147	 62.63	0	1049577..1049972	-	131	148239483	-	SynWH7803_1147	-	hypothetical protein
1148	 60.86	0	1049972..1050850	-	292	148239484	accD	SynWH7803_1148	-	acetyl-CoA carboxylase subunit beta
1149	 63.97	0	1050887..1051702	-	271	148239485	-	SynWH7803_1149	-	prepilin peptidase, type IV
1150	 60.61	0	1051699..1051995	-	98	148239486	-	SynWH7803_1150	-	hypothetical protein
1151	 58.03	0	1052086..1052988	-	300	148239487	prk	SynWH7803_1151	-	phosphoribulokinase
1152	 61.82	0	1053064..1054137	-	357	148239488	leuB	SynWH7803_1152	-	3-isopropylmalate dehydrogenase
1153	 63.42	0	1054167..1055243	-	358	148239489	lpxD	SynWH7803_1153	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1154	 64.87	0	1055248..1056363	-	371	148239490	proB	SynWH7803_1154	-	gamma-glutamyl kinase
1155	 65.49	+1	1056360..1056869	-	169	148239491	-	SynWH7803_1155	-	HAD superfamily hydrolase
1156	 58.56	0	1056869..1057411	-	180	148239492	-	SynWH7803_1156	-	hypothetical protein
1157	 63.75	0	1057408..1057887	-	159	148239493	-	SynWH7803_1157	-	putative Holliday junction resolvase
1158	 62.82	0	1057911..1058975	-	354	148239494	-	SynWH7803_1158	-	hypothetical protein
1159	 62.90	0	1059027..1060193	-	388	148239495	-	SynWH7803_1159	-	hypothetical protein
1160	 60.52	0	1060255..1060791	-	178	148239496	-	SynWH7803_1160	-	hypothetical protein
1161	 61.16	0	1060852..1062468	-	538	148239497	-	SynWH7803_1161	-	hypothetical protein
1162	 59.40	0	1062514..1062981	-	155	148239498	fur	SynWH7803_1162	-	ferric uptake regulator family protein
1163	 64.72	0	1063036..1063806	-	256	148239499	hisA	SynWH7803_1163	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1164	 62.34	0	1063886..1064809	+	307	148239500	-	SynWH7803_1164	-	NAD dependent epimerase/dehydratase
1165	 63.39	0	1064775..1065323	-	182	148239501	pgsA	SynWH7803_1165	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1166	 62.00	0	1065355..1065825	+	156	148239502	-	SynWH7803_1166	-	CBS domain-containing protein
1167	 61.40	0	1065822..1067018	-	398	148239503	-	SynWH7803_1167	-	hypothetical protein
1168	 59.28	0	1067094..1067567	+	157	148239504	-	SynWH7803_1168	-	hypothetical protein
1169	 59.93	0	1067585..1067866	+	93	148239505	-	SynWH7803_1169	-	hypothetical protein
1170	 61.69	0	1067869..1069254	-	461	148239506	-	SynWH7803_1170	-	hypothetical protein
1171	 63.29	0	1069317..1069997	-	226	148239507	-	SynWH7803_1171	-	ICC-like phosphoesterase
1172	 61.38	0	1070085..1070273	+	62	148239508	-	SynWH7803_1172	-	hypothetical protein
1173	 59.78	0	1070355..1071428	+	357	148239509	-	SynWH7803_1173	-	hypothetical protein
1174	 59.07	0	1071452..1071688	-	78	148239510	-	SynWH7803_1174	-	hypothetical protein
1175	 58.29	0	1071776..1072372	+	198	148239511	-	SynWH7803_1175	-	hypothetical protein
1176	 58.22	0	1072369..1072581	+	70	148239512	-	SynWH7803_1176	-	hypothetical protein
1177	 57.41	0	1072569..1072730	-	53	148239513	-	SynWH7803_1177	-	hypothetical protein
1178	 60.14	0	1072815..1074284	-	489	148239514	-	SynWH7803_1178	-	porin-like protein
1179	 60.74	0	1074323..1075132	-	269	148239515	-	SynWH7803_1179	-	ABC transporter ATPase component
1180	 61.11	0	1075168..1075383	+	71	148239516	-	SynWH7803_1180	-	Zn-ribbon protein
1181	 61.43	0	1075380..1075799	-	139	148239517	-	SynWH7803_1181	-	NUDIX hydrolase
1182	 57.14	0	1075807..1076058	-	83	148239518	-	SynWH7803_1182	-	hypothetical protein
1183	 56.51	0	1076404..1076925	-	173	148239519	-	SynWH7803_1183	-	hypothetical protein
1184	 59.02	0	1076930..1077400	-	156	148239520	-	SynWH7803_1184	-	hypothetical protein
1185	 64.67	0	1077454..1078155	+	233	148239521	-	SynWH7803_1185	-	hypothetical protein
1186	 58.42	0	1078163..1078768	-	201	148239522	-	SynWH7803_1186	-	hypothetical protein
1187	 63.38	0	1078765..1079952	-	395	148239523	chrA	SynWH7803_1187	-	chromate transporter
1188	 62.28	0	1079980..1082370	-	796	148239524	-	SynWH7803_1188	-	putative ATP-dependent helicase
1189	 57.62	0	1082424..1082633	-	69	148239525	-	SynWH7803_1189	-	hypothetical protein
1190	 50.86	-1	1082692..1083678	+	328	148239526	-	SynWH7803_1190	-	hypothetical protein
1191	 56.16	0	1083675..1083950	+	91	148239527	-	SynWH7803_1191	-	hypothetical protein
1192	 60.01	0	1083977..1085524	+	515	148239528	speE	SynWH7803_1192	-	spermidine synthase
1193	 51.48	-1	1085623..1086129	+	168	148239529	-	SynWH7803_1193	-	hypothetical protein
1194	 61.13	0	1086126..1087823	-	565	148239530	lig	SynWH7803_1194	-	ATP-dependent DNA ligase
1195	 62.18	0	1087849..1088205	-	118	148239531	-	SynWH7803_1195	-	hypothetical protein
1196	 62.37	0	1088234..1089211	-	325	148239532	-	SynWH7803_1196	-	RNA processing exonuclease
1197	 57.72	0	1089293..1090891	+	532	148239533	-	SynWH7803_1197	-	putative multicopper oxidase
1198	 57.56	0	1090911..1091843	-	310	148239534	nadA	SynWH7803_1198	-	quinolinate synthetase
1199	 63.52	0	1091953..1092747	+	264	148239535	-	SynWH7803_1199	-	phosphoesterase
1200	 62.65	0	1092747..1093841	+	364	148239536	-	SynWH7803_1200	-	hypothetical protein
1201	 58.06	0	1094066..1094809	+	247	148239537	-	SynWH7803_1201	-	muramidase
1202	 61.07	0	1094842..1095645	-	267	148239538	-	SynWH7803_1202	-	hypothetical protein
1203	 60.67	0	1095681..1096913	+	410	148239539	-	SynWH7803_1203	-	hypothetical protein
1204	 58.51	0	1096885..1097988	-	367	148239540	aroB	SynWH7803_1204	-	3-dehydroquinate synthase
1205	 54.21	-1	1098060..1098950	+	296	148239541	-	SynWH7803_1205	-	ABC-type sugar transport systems, permease component
1206	 59.87	0	1098967..1100202	+	411	148239542	purK	SynWH7803_1206	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1207	 59.06	0	1100392..1100667	-	91	148239543	-	SynWH7803_1207	-	hypothetical protein
1208	 58.77	0	1100746..1100973	+	75	148239544	-	SynWH7803_1208	-	hypothetical protein
1209	 57.70	0	1100980..1102362	-	460	148239545	-	SynWH7803_1209	-	major facilitator superfamily permease
1210	 54.88	-1	1102398..1102694	-	98	148239546	clpS	SynWH7803_1210	-	ATP-dependent Clp protease adaptor
1211	 56.86	0	1102765..1102866	+	33	148239547	petN	SynWH7803_1211	-	cytochrome b6-f complex subunit PetN
1212	 59.22	0	1103007..1104416	+	469	148239548	-	SynWH7803_1212	-	hypothetical protein
1213	 57.12	0	1104407..1105087	-	226	161347491	-	SynWH7803_1213	-	Thf1-like protein
1214	 52.12	-1	1105168..1105758	+	196	148239550	clpP	SynWH7803_1214	-	ATP-dependent Clp protease proteolytic subunit
1215	 45.30	-2	1105827..1106060	-	77	148239551	-	SynWH7803_1215	-	hypothetical protein
1216	 56.95	0	1106103..1108016	-	637	148239552	ftsH	SynWH7803_1216	-	cell division protein FtsH
1217	 57.56	0	1108080..1109309	-	409	148239553	-	SynWH7803_1217	-	peptide ABC transporter permease
1218	 58.15	0	1109324..1111108	-	594	148239554	pykF	SynWH7803_1218	-	pyruvate kinase
1219	 57.88	0	1111165..1111494	+	109	148239555	-	SynWH7803_1219	-	MazG family pyrophosphatase
1220	 57.76	0	1111498..1111800	-	100	148239556	-	SynWH7803_1220	-	hypothetical protein
1221	 58.24	0	1111825..1112370	-	181	148239557	-	SynWH7803_1221	-	transcriptional regulator
1222	 60.01	0	1112425..1113957	-	510	148239558	ilvA	SynWH7803_1222	-	threonine dehydratase
1223	 57.36	0	1114035..1115978	+	647	148239559	dxs	SynWH7803_1223	-	1-deoxy-D-xylulose-5-phosphate synthase
1224	 58.14	0	1116030..1116287	-	85	148239560	psaK	SynWH7803_1224	-	photosystem I reaction center subunit X
1225	 56.01	0	1116355..1116645	-	96	148239561	-	SynWH7803_1225	-	hypothetical protein
1226	 57.41	0	1116645..1116968	-	107	148239562	-	SynWH7803_1226	-	hypothetical protein
1227	 49.05	-2	1117015..1118121	+	368	148239563	-	SynWH7803_1227	-	hypothetical protein
1228	 42.94	-2	1118150..1119169	-	339	148239564	sphX	SynWH7803_1228	-	ABC transporter, substrate binding protein, phosphate
1229	 41.90	-2	1119229..1120383	-	384	148239565	corA	SynWH7803_1229	-	Mg2+/Co2+ transporter
1230	 40.33	-2	1120461..1122332	-	623	148239566	-	SynWH7803_1230	-	hypothetical protein
1231	 46.19	-2	1122356..1123327	-	323	148239567	malK	SynWH7803_1231	-	ABC-type sugar transport system, ATPase component
1232	 44.98	-2	1123324..1124139	-	271	148239568	ugpE	SynWH7803_1232	-	ABC-type sugar transport system, permease component
1233	 46.96	-2	1124136..1125008	-	290	148239569	ugpA	SynWH7803_1233	-	ABC-type sugar transport system, permease component
1234	 45.12	-2	1125005..1126285	-	426	148239570	ugpB	SynWH7803_1234	-	ABC-type sugar transport system, periplasmic component
1235	 43.06	-2	1126291..1127781	-	496	148239571	-	SynWH7803_1235	-	glycosyltransferase of family trehalose-phosphate synthase
1236	 51.81	-1	1127843..1128394	-	183	148239572	ccp	SynWH7803_1236	-	peroxiredoxin
1237	 54.85	-1	1128411..1128647	-	78	148239573	rpmB	SynWH7803_1237	-	50S ribosomal protein L28
1238	 49.26	-2	1128705..1130606	-	633	148239574	htpG	SynWH7803_1238	-	heat shock protein 90
1239	 44.44	-2	1130717..1130941	-	74	148239575	-	SynWH7803_1239	-	ferredoxin
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.