IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1065	 60.44	0	976748..976972	+	74	148239401	-	SynWH7803_1065	-	hypothetical protein
1066	 61.95	0	977031..978494	+	487	148239402	gatA	SynWH7803_1066	-	glutamyl-tRNA(Gln) amidotransferase subunit A
1067	 59.06	0	978564..982085	+	1173	148239403	dnaE	SynWH7803_1067	-	DNA polymerase III subunit alpha
1068	 60.32	0	982139..982516	-	125	148239404	-	SynWH7803_1068	-	hypothetical protein
1069	 58.52	0	982543..982812	-	89	148239405	rpsO	SynWH7803_1069	-	30S ribosomal protein S15
1070	 63.89	0	982867..983514	-	215	148239406	ruvA	SynWH7803_1070	-	Holliday junction resolvasome DNA-binding subunit
1071	 63.03	0	983536..984003	+	155	148239407	-	SynWH7803_1071	-	hypothetical protein
1072	 62.55	0	983982..984905	-	307	148239408	-	SynWH7803_1072	-	DMT family permease
1073	 62.25	0	984992..987073	+	693	148239409	dnaG	SynWH7803_1073	-	DNA primase
1074	 63.83	0	987019..988005	-	328	148239410	-	SynWH7803_1074	-	hypothetical protein
1075	 60.04	0	988101..989111	+	336	148239411	arsB	SynWH7803_1075	-	arsenite efflux pump ACR3 related permease
1076	 57.36	0	989113..989370	+	85	148239412	-	SynWH7803_1076	-	hypothetical protein
1077	 63.30	0	989370..989666	+	98	148239413	-	SynWH7803_1077	-	hypothetical protein
1078	 57.55	0	989669..990535	-	288	148239414	-	SynWH7803_1078	-	hypothetical protein
1079	 61.87	0	990665..991039	+	124	148239415	-	SynWH7803_1079	-	hypothetical protein
1080	 66.43	+1	991048..992322	-	424	148239416	umuC	SynWH7803_1080	-	SOS-regulated protein
1081	 66.22	+1	992328..992771	-	147	148239417	umuD	SynWH7803_1081	-	SOS-regulated protein
1082	 61.67	0	992817..993536	-	239	148239418	-	SynWH7803_1082	-	lysophospholipase-like protein
1083	 63.10	0	993635..994027	+	130	148239419	-	SynWH7803_1083	-	hypothetical protein
1084	 63.53	0	994147..994815	+	222	148239420	-	SynWH7803_1084	-	hypothetical protein
1085	 62.99	0	994828..995262	-	144	148239421	-	SynWH7803_1085	-	hypothetical protein
1086	 61.74	0	995259..996599	-	446	148239422	-	SynWH7803_1086	-	hypothetical protein
1087	 65.10	0	996586..997032	-	148	148239423	-	SynWH7803_1087	-	hypothetical protein
1088	 62.05	0	997032..997508	-	158	148239424	-	SynWH7803_1088	-	pentapeptide repeat-containing protein
1089	 52.53	-1	997659..998153	-	164	148239425	-	SynWH7803_1089	-	hypothetical protein
1090	 46.88	-2	998365..998733	+	122	148239426	-	SynWH7803_1090	-	hypothetical protein
1091	 53.93	-1	999051..999317	-	88	148239427	-	SynWH7803_1091	-	hypothetical protein
1092	 47.53	-2	999458..999781	-	107	148239428	-	SynWH7803_1092	-	hypothetical protein
1093	 58.82	0	1000045..1000758	-	237	148239429	-	SynWH7803_1093	-	hypothetical protein
1094	 58.19	0	1000850..1001569	+	239	148239430	-	SynWH7803_1094	-	TerC family membrane protein
1095	 59.17	0	1001573..1001932	+	119	148239431	-	SynWH7803_1095	-	hypothetical protein
1096	 57.33	0	1001956..1002180	+	74	148239432	-	SynWH7803_1096	-	hypothetical protein
1097	 58.10	0	1002191..1002400	+	69	148239433	-	SynWH7803_1097	-	hypothetical protein
1098	 60.42	0	1002516..1003715	+	399	148239434	rhlE	SynWH7803_1098	-	putative ATP-dependent RNA helicase
1099	 60.02	0	1003712..1004734	-	340	148239435	fmt	SynWH7803_1099	-	methionyl-tRNA formyltransferase
1100	 58.92	0	1004762..1006129	-	455	148239436	pmbA	SynWH7803_1100	-	putative modulator of DNA gyrase
1101	 59.06	0	1006132..1007577	-	481	148239437	tldD	SynWH7803_1101	-	putative modulator of DNA gyrase
1102	 55.86	0	1007577..1008659	-	360	148239438	acsF	SynWH7803_1102	-	magnesium-protoporphyrin IX monomethyl ester cyclase
1103	 59.82	0	1008731..1009168	-	145	148239439	-	SynWH7803_1103	-	hypothetical protein
1104	 62.30	0	1009228..1009731	-	167	148239440	-	SynWH7803_1104	-	hypothetical protein
1105	 60.78	0	1009728..1010339	-	203	148239441	-	SynWH7803_1105	-	aromatic acid decarboxylase
1106	 58.43	0	1010336..1012714	-	792	148239442	vacB	SynWH7803_1106	-	exoribonuclease R
1107	 59.48	0	1012841..1013146	-	101	148239443	-	SynWH7803_1107	-	hypothetical protein
1108	 59.70	0	1013195..1013524	-	109	148239444	-	SynWH7803_1108	-	hypothetical protein
1109	 58.60	0	1013521..1013892	-	123	148239445	-	SynWH7803_1109	-	Fe-S cluster protein
1110	 60.90	0	1014129..1015499	-	456	148239446	-	SynWH7803_1110	-	chloride channel protein
1111	 63.29	0	1015496..1017391	-	631	148239447	recJ	SynWH7803_1111	-	single-stranded DNA-specific exonuclease
1112	 63.10	0	1017474..1018229	+	251	148239448	-	SynWH7803_1112	-	putative CbbY homolog (potential phosphonatase)
1113	 59.59	0	1018226..1018564	+	112	148239449	-	SynWH7803_1113	-	hypothetical protein
1114	 61.31	0	1018554..1019486	+	310	148239450	-	SynWH7803_1114	-	kinase
1115	 58.19	0	1019488..1019664	-	58	148239451	rpmF	SynWH7803_1115	-	50S ribosomal protein L32
1116	 61.25	0	1019752..1021614	+	620	148239452	ftsH	SynWH7803_1116	-	cell division protein FtsH
1117	 55.56	0	1021668..1024412	+	914	148239453	-	SynWH7803_1117	-	hypothetical protein
1118	 60.03	0	1024460..1025062	-	200	148239454	ahpC	SynWH7803_1118	-	AhpC/TSA family peroxiredoxin
1119	 55.33	-1	1025216..1025506	+	96	148239455	-	SynWH7803_1119	-	hypothetical protein
1120	 56.43	0	1025699..1026685	-	328	148239456	-	SynWH7803_1120	-	zinc metallopeptidase
1121	 57.83	0	1026795..1027292	-	165	148239457	-	SynWH7803_1121	-	rRNA methylase
1122	 60.72	0	1027289..1027843	-	184	148239458	cobU	SynWH7803_1122	-	bifunctional adenosylcobalamin biosynthesis protein (adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase
1123	 54.83	-1	1027830..1028978	-	382	148239459	pcxA	SynWH7803_1123	-	proton extrusion protein PcxA
1124	 59.00	0	1028986..1029663	-	225	148239460	-	SynWH7803_1124	-	hypothetical protein
1125	 60.65	0	1029694..1030125	-	143	148239461	-	SynWH7803_1125	-	hypothetical protein
1126	 62.54	0	1030157..1030834	+	225	148239462	-	SynWH7803_1126	-	hypothetical protein
1127	 60.02	0	1030764..1031951	-	395	148239463	-	SynWH7803_1127	-	hypothetical protein
1128	 57.15	0	1031951..1033495	-	514	148239464	metG	SynWH7803_1128	-	methionyl-tRNA synthetase
1129	 60.59	0	1033606..1034214	+	202	148239465	-	SynWH7803_1129	-	hypothetical protein
1130	 66.55	+1	1034214..1036001	+	595	148239466	-	SynWH7803_1130	-	hypothetical protein
1131	 61.52	0	1036002..1037672	-	556	148239467	ilvD	SynWH7803_1131	-	dihydroxy-acid dehydratase
1132	 65.32	+1	1037726..1038022	-	98	148239468	-	SynWH7803_1132	-	hypothetical protein
1133	 59.39	0	1038047..1038664	-	205	148239469	upp	SynWH7803_1133	-	Uracil phosphoribosyltransferase
1134	 58.19	0	1038750..1039280	+	176	148239470	-	SynWH7803_1134	-	pentapeptide repeat-containing protein
1135	 59.89	0	1039271..1040407	+	378	148239471	cobW	SynWH7803_1135	-	cobalamin biosynthesis protein
1136	 61.84	0	1040404..1041771	-	455	148239472	-	SynWH7803_1136	-	Na+/galactoside symporter
1137	 65.52	+1	1041810..1042418	-	202	148239473	-	SynWH7803_1137	-	hypothetical protein
1138	 61.57	0	1042488..1043036	-	182	148239474	-	SynWH7803_1138	-	S-isoprenylcysteine O-methyltransferase related enzyme
1139	 60.99	0	1043067..1043771	+	234	148239475	-	SynWH7803_1139	-	short-chain dehydrogenase/reductase
1140	 62.64	0	1043774..1044121	-	115	148239476	-	SynWH7803_1140	-	hypothetical protein
1141	 60.78	0	1044219..1044473	+	84	148239477	purS	SynWH7803_1141	-	phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
1142	 62.23	0	1044470..1045123	+	217	148239478	purQ	SynWH7803_1142	-	phosphoribosylformylglycinamidine synthase domain-containing protein
1143	 62.37	0	1045127..1046104	+	325	148239479	-	SynWH7803_1143	-	hypothetical protein
1144	 60.21	0	1046114..1047244	+	376	148239480	-	SynWH7803_1144	-	hypothetical protein
1145	 62.10	0	1047299..1048372	-	357	148239481	-	SynWH7803_1145	-	fructose-1,6-bisphosphate aldolase
1146	 63.26	0	1048459..1049544	-	361	148239482	mviM	SynWH7803_1146	-	dehydrogenase
1147	 62.63	0	1049577..1049972	-	131	148239483	-	SynWH7803_1147	-	hypothetical protein
1148	 60.86	0	1049972..1050850	-	292	148239484	accD	SynWH7803_1148	-	acetyl-CoA carboxylase subunit beta
1149	 63.97	0	1050887..1051702	-	271	148239485	-	SynWH7803_1149	-	prepilin peptidase, type IV
1150	 60.61	0	1051699..1051995	-	98	148239486	-	SynWH7803_1150	-	hypothetical protein
1151	 58.03	0	1052086..1052988	-	300	148239487	prk	SynWH7803_1151	-	phosphoribulokinase
1152	 61.82	0	1053064..1054137	-	357	148239488	leuB	SynWH7803_1152	-	3-isopropylmalate dehydrogenase
1153	 63.42	0	1054167..1055243	-	358	148239489	lpxD	SynWH7803_1153	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1154	 64.87	0	1055248..1056363	-	371	148239490	proB	SynWH7803_1154	-	gamma-glutamyl kinase
1155	 65.49	+1	1056360..1056869	-	169	148239491	-	SynWH7803_1155	-	HAD superfamily hydrolase
1156	 58.56	0	1056869..1057411	-	180	148239492	-	SynWH7803_1156	-	hypothetical protein
1157	 63.75	0	1057408..1057887	-	159	148239493	-	SynWH7803_1157	-	putative Holliday junction resolvase
1158	 62.82	0	1057911..1058975	-	354	148239494	-	SynWH7803_1158	-	hypothetical protein
1159	 62.90	0	1059027..1060193	-	388	148239495	-	SynWH7803_1159	-	hypothetical protein
1160	 60.52	0	1060255..1060791	-	178	148239496	-	SynWH7803_1160	-	hypothetical protein
1161	 61.16	0	1060852..1062468	-	538	148239497	-	SynWH7803_1161	-	hypothetical protein
1162	 59.40	0	1062514..1062981	-	155	148239498	fur	SynWH7803_1162	-	ferric uptake regulator family protein
1163	 64.72	0	1063036..1063806	-	256	148239499	hisA	SynWH7803_1163	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1164	 62.34	0	1063886..1064809	+	307	148239500	-	SynWH7803_1164	-	NAD dependent epimerase/dehydratase
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.