IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.48   STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
39	 56.51	0	49774..51909	+	711	86607542	narB	CYB_0040	-	nitrate reductase
40	 51.10	-1	51934..52434	+	166	86607543	-	CYB_0042	-	hypothetical protein
41	 55.17	0	52431..53648	-	405	86607544	-	CYB_0041	-	ISSoc1, transposase
42	 62.35	0	54109..55404	-	431	86607545	purD	CYB_0043	-	phosphoribosylamine--glycine ligase
43	 64.01	+1	55507..56598	-	363	86607546	-	CYB_0044	-	glycosyl transferase, group 2 family protein
44	 59.84	0	56766..58055	-	429	86607547	-	CYB_0045	-	HD domain-containing protein
45	 63.41	+1	58144..59217	+	357	86607548	-	CYB_0046	-	GDSL-like lipase/acylhydrolase domain-containing protein
46	 60.13	0	59247..61082	-	611	86607549	-	CYB_0047	-	metallo-beta-lactamase family protein
47	 56.79	0	61302..62222	-	306	86607550	dapA	CYB_0048	-	dihydrodipicolinate synthase
48	 59.17	0	62498..63124	+	208	86607551	-	CYB_0049	-	nitroreductase family protein
49	 63.08	+1	63176..64207	-	343	86607552	trpD	CYB_0050	-	anthranilate phosphoribosyltransferase
50	 61.88	0	64391..65770	+	459	86607553	gid	CYB_0051	-	tRNA (uracil-5-)-methyltransferase Gid
51	 43.38	-2	65862..66269	-	135	86607554	-	CYB_0052	-	ISSoc13, transposase orfB
52	 44.71	-2	66227..66604	-	125	86607555	-	CYB_0053	-	ISSoc13, transposase orfA
53	 56.44	0	66823..67761	-	312	86607556	-	CYB_0054	-	phosphotransferase family protein
54	 58.52	0	68199..68468	+	89	86607557	-	CYB_0055	-	hypothetical protein
55	 59.46	0	68551..69216	+	221	86607558	-	CYB_0056	-	guanylate kinase, putative
56	 59.26	0	69559..70017	+	152	86607559	-	CYB_0057	-	S-adenosylmethionine decarboxylase proenzyme
57	 60.17	0	70137..71075	+	312	86607560	speE	CYB_0058	-	spermidine synthase
58	 58.42	0	71168..72319	+	383	86607561	-	CYB_0060	-	putative UDP-sulfoquinovose synthase
59	 61.40	0	72316..73227	-	303	86607562	-	CYB_0059	-	histone deacetylase family protein
60	 52.65	-1	73285..73605	-	106	86607563	-	CYB_0061	-	hypothetical protein
61	 53.23	-1	74202..74573	-	123	86607564	-	CYB_0062	-	iojap-like protein
62	 57.91	0	74616..75209	-	197	86607565	-	CYB_0063	-	HD domain-containing protein
63	 56.79	0	75214..77025	-	603	86607566	lepA	CYB_0064	-	GTP-binding protein LepA
64	 47.16	-2	77357..77884	-	175	86607567	-	CYB_0065	-	hypothetical protein
65	 55.42	0	78035..79021	-	328	86607568	glyQ	CYB_0066	-	glycyl-tRNA synthetase subunit alpha
66	 58.30	0	79074..79838	-	254	86607569	-	CYB_0067	-	T1 family peptidase
67	 63.04	+1	79887..81374	-	495	86607570	-	CYB_0068	-	GTP-binding protein
68	 60.35	0	81528..81812	+	94	86607571	-	CYB_0069	-	hypothetical protein
69	 62.39	0	81871..82455	+	194	86607572	-	CYB_0070	-	WD-40-like beta propeller repeat-containing protein
70	 60.84	0	82505..83689	+	394	86607573	-	CYB_0071	-	succinyldiaminopimelate transaminase
71	 57.22	0	83850..84548	+	232	86607574	-	CYB_0072	-	hypothetical protein
72	 62.63	+1	84796..86109	+	437	86607575	hisD	CYB_0073	-	histidinol dehydrogenase
73	 53.23	-1	86288..87061	+	257	86607576	-	CYB_0074	-	ISSoc11, transposase orfA
74	 56.82	0	87267..87530	+	87	86607577	-	CYB_0075	-	ISSoc11, transposase orfB
75	 61.93	0	87777..90329	+	850	86607578	-	CYB_0076	-	hypothetical protein
76	 58.70	0	90396..90809	-	137	86607579	-	CYB_0077	-	hypothetical protein
77	 58.15	0	90876..91556	+	226	86607580	-	CYB_0078	-	RNA pseudouridine synthase family protein
78	 59.41	0	91835..93184	-	449	86607581	purA	CYB_0079	-	adenylosuccinate synthetase
79	 62.47	0	93396..94895	-	499	86607582	-	CYB_0080	-	S41 family peptidase
80	 55.58	0	95176..96330	+	384	86607583	-	CYB_0081	-	ISSoc8, transposase
81	 57.51	0	96348..98018	-	556	86607584	tig	CYB_0082	-	trigger factor
82	 57.29	0	98090..98473	-	127	86607585	-	CYB_0083	-	hypothetical protein
83	 60.40	0	98558..99610	-	350	86607586	-	CYB_0084	-	cytochrome c assembly protein
84	 63.16	+1	99710..101248	+	512	86607587	-	CYB_0085	-	hypothetical protein
85	 58.89	0	101494..102624	-	376	86607588	-	CYB_0086	-	hypothetical protein
86	 54.11	-1	102812..104029	+	405	86607589	-	CYB_0087	-	ISSoc1, transposase
87	 61.71	0	104064..105293	+	409	86607590	xseA	CYB_0088	-	exodeoxyribonuclease VII large subunit
88	 55.27	0	105274..105510	+	78	86607591	xseB	CYB_0089	-	exodeoxyribonuclease VII, small subunit
89	 62.36	0	105603..106484	+	293	86607592	folD	CYB_0090	-	FolD bifunctional protein
90	 58.72	0	107027..107731	-	234	86607593	-	CYB_0091	-	hypothetical protein
91	 59.22	0	107841..108458	-	205	86607594	-	CYB_0092	-	pyridoxamine 5'-phosphate oxidase family protein
92	 58.76	0	108515..109690	-	391	86607595	-	CYB_0093	-	acetyltransferase
93	 57.95	0	110017..110670	-	217	86607596	-	CYB_0094	-	hypothetical protein
94	 60.79	0	110944..112338	+	464	86607597	murA	CYB_0095	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
95	 62.08	0	112532..114667	+	711	86607598	-	CYB_0096	-	Slt family transglycosylase
96	 60.88	0	114811..115398	+	195	86607599	sixA	CYB_0097	-	phosphohistidine phosphatase SixA
97	 60.54	0	115467..115760	-	97	86607600	-	CYB_0098	-	hypothetical protein
98	 60.06	0	115840..116520	+	226	86607601	-	CYB_0100	-	DnaJ family protein
99	 59.08	0	116512..117381	-	289	86607602	-	CYB_0099	-	S49 family peptidase
100	 60.77	0	117452..118333	-	293	86607603	-	CYB_0101	-	hypothetical protein
101	 56.17	0	118335..119306	-	323	86607604	-	CYB_0102	-	beta-carotene ketolase, putative
102	 57.32	0	119664..119909	+	81	86607605	psaK	CYB_0103	-	photosystem I reaction center protein PsaK
103	 49.61	-2	120040..120168	+	42	86607606	psbK	CYB_0104	-	photosystem II reaction center protein K
104	 58.70	0	120507..121046	-	179	86607607	-	CYB_0105	-	hypothetical protein
105	 56.60	0	121122..121568	-	148	86607608	-	CYB_0106	-	hypothetical protein
106	 60.34	0	121855..122913	+	352	86607609	chlI	CYB_0107	-	magnesium chelatase, ATPase subunit I
107	 63.09	+1	122953..123651	-	232	86607610	-	CYB_0108	-	hypothetical protein
108	 57.87	0	124060..124593	-	177	86607611	nucH	CYB_0109	-	thermonuclease
109	 62.02	0	124796..124924	-	42	86607612	-	CYB_0110	-	hypothetical protein
110	 61.22	0	125417..126004	+	195	86607613	-	CYB_0111	-	CAAX amino terminal protease family protein
111	 57.71	0	126236..127117	+	293	86607614	-	CYB_0112	-	phospholipase/carboxylesterase family protein
112	 54.84	0	127262..127912	+	216	86607615	-	CYB_0113	-	anti-oxidant AhpCTSA family protein
113	 56.32	0	128097..128666	-	189	86607616	scpB	CYB_0114	-	segregation and condensation protein B
114	 58.69	0	128766..130922	-	718	86607617	-	CYB_0115	-	NAD(P)H-quinone oxidoreductase subunit F
115	 53.99	-1	130928..131140	+	70	86607618	-	CYB_0116	-	hypothetical protein
116	 59.10	0	131259..131615	+	118	86607619	-	CYB_0117	-	single-strand DNA-binding protein
117	 62.70	+1	131641..132396	-	251	86607620	cobK	CYB_0118	-	cobalt-precorrin-6x reductase
118	 56.98	0	132488..133003	+	171	86607621	-	CYB_0119	-	hypothetical protein
119	 61.44	0	133034..133855	+	273	86607622	-	CYB_0120	-	MOSC domain-containing protein
120	 60.16	0	133905..135134	+	409	86607623	ispG	CYB_0121	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
121	 56.41	0	135204..135632	-	142	86607624	-	CYB_0122	-	hypothetical protein
122	 56.85	0	135720..136391	+	223	86607625	-	CYB_0123	-	hypothetical protein
123	 58.92	0	136597..136893	+	98	86607626	-	CYB_0124	-	hypothetical protein
124	 57.09	0	136913..137173	-	86	86607627	grxC	CYB_0125	-	glutaredoxin 3
125	 53.36	-1	137266..140061	-	931	86607628	polA	CYB_0126	-	DNA polymerase I
126	 60.38	0	140385..141068	+	227	86607629	-	CYB_0127	-	putative polysaccharide deacetylase
127	 59.16	0	141133..141891	+	252	86607630	-	CYB_0128	-	pspA/IM30 family protein
128	 61.14	0	142155..142679	+	174	86607631	psbP	CYB_0129	-	photosystem II oxygen evolving complex protein PsbP
129	 57.11	0	142995..143789	+	264	86607632	icc	CYB_0131	-	icc protein
130	 63.88	+1	143786..144610	-	274	86607633	-	CYB_0130	-	ABC transporter, permease protein
131	 64.19	+1	144607..145536	-	309	86607634	-	CYB_0132	-	ABC transporter, permease protein
132	 60.26	0	145666..146820	+	384	86607635	-	CYB_0133	-	hypothetical protein
133	 61.51	0	147255..148340	-	361	86607636	-	CYB_0134	-	polysaccharide pyruvyl-transferase
134	 56.26	0	148418..149311	-	297	86607637	-	CYB_0135	-	hypothetical protein
135	 54.32	-1	149363..149767	-	134	86607638	psbU	CYB_0136	-	photosystem II complex extrinsic protein precursor U
136	 62.69	+1	149926..152892	+	988	86607639	gcvP	CYB_0137	-	glycine dehydrogenase
137	 60.27	0	152926..153597	+	223	86607640	-	CYB_0138	-	hypothetical protein
138	 60.27	0	153600..154037	+	145	86607641	-	CYB_0139	-	hypothetical protein
58.48	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.