IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
809	 62.33	0	862696..863940	+	414	86608313	-	CYB_0831	-	hypothetical protein
810	 65.22	+1	863963..864583	+	206	86608314	tmk	CYB_0832	-	thymidylate kinase
811	 58.69	0	865060..866037	+	325	86608315	-	CYB_0833	-	CHAD domain-containing protein
812	 55.56	0	867437..867715	-	92	86608316	cas2	CYB_0834	-	CRISPR-associated Cas2 family protein
813	 51.01	-1	867715..868704	-	329	86608317	cas1	CYB_0835	-	CRISPR-associated Cas1 family protein
814	 50.00	-2	868704..869003	-	99	86608318	-	CYB_0836	-	hypothetical protein
815	 52.96	-1	869033..870856	-	607	86608319	-	CYB_0837	-	CRISPR-associated RAMP family protein
816	 50.93	-1	870887..871528	-	213	86608320	-	CYB_0838	-	hypothetical protein
817	 50.64	-1	871528..871920	-	130	86608321	-	CYB_0839	-	hypothetical protein
818	 53.70	-1	871945..872715	-	256	86608322	cmr4	CYB_0840	-	CRISPR-associated RAMP Cmr4 family protein family protein
819	 62.81	+1	872763..873902	-	379	86608323	-	CYB_0841	-	hypothetical protein
820	 60.44	0	873899..876886	-	995	86608324	crm2-2	CYB_0842	-	CRISPR-associated RAMP Crm2 family protein
821	 55.07	0	877089..878468	-	459	86608325	-	CYB_0843	-	CRISPR-associated TM1812 family protein
822	 54.32	-1	878454..878615	+	53	86608326	-	CYB_0844	-	hypothetical protein
823	 53.20	-1	878590..879339	+	249	86608327	-	CYB_0845	-	hypothetical protein
824	 56.65	0	879472..879990	-	172	86608328	-	CYB_0846	-	hypothetical protein
825	 57.16	0	880480..881394	-	304	86608329	-	CYB_0847	-	putative ribosomal protein S1
826	 59.18	0	881472..881912	-	146	86608330	-	CYB_0848	-	rrf2 family protein
827	 58.03	0	882043..883038	+	331	86608331	-	CYB_0849	-	AAA family ATPase
828	 60.35	0	883063..884091	-	342	86608332	-	CYB_0850	-	OppBC ABC transporter family permease
829	 61.13	0	884301..885257	+	318	86608333	-	CYB_0851	-	NAD-dependent epimerase/dehydratase family protein
830	 60.72	0	885361..886419	-	352	86608334	cobW	CYB_0852	-	cobalamin biosynthesis protein CobW
831	 59.62	0	886556..887974	-	472	86608335	psbC	CYB_0853	-	photosystem II 44 kDa subunit reaction center protein
832	 59.96	0	888123..889181	-	352	86608336	psbD-1	CYB_0854	-	photosystem II protein D2
833	 59.26	0	889659..889766	+	35	86608337	petM	CYB_0855	-	cytochrome b6-f complex subunit PetM
834	 61.33	0	889880..890854	+	324	86608338	panE-1	CYB_0856	-	2-dehydropantoate 2-reductase
835	 60.81	0	891048..891815	+	255	86608339	-	CYB_0857	-	short chain dehydrogenase/reductase family oxidoreductase
836	 58.02	0	891888..893147	+	419	86608340	-	CYB_0858	-	sensor histidine kinase
837	 50.00	-2	893302..893565	+	87	86608341	-	CYB_0859	-	LuxR family transcriptional regulator
838	 48.03	-2	893829..894107	+	92	86608342	-	CYB_0860	-	hypothetical protein
839	 56.27	0	894187..895071	-	294	86608343	-	CYB_0861	-	fatty acid desaturase
840	 56.44	0	895382..896095	+	237	86608344	-	CYB_0862	-	TetR family transcriptional regulator
841	 59.15	0	896539..897762	-	407	86608345	-	CYB_0863	-	acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein
842	 56.78	0	897784..898137	-	117	86608346	-	CYB_0864	-	rhodanese family protein
843	 59.65	0	898249..898362	+	37	86608347	-	CYB_0865	-	putative lipoprotein
844	 49.49	-2	898828..898926	-	32	86608348	-	CYB_0867	-	hypothetical protein
845	 59.16	0	898964..900535	+	523	86608349	-	CYB_0868	-	putative lipoprotein
846	 54.82	0	900869..901501	-	210	86608350	-	CYB_0869	-	NADH dehydrogenase subunit I
847	 56.40	0	901540..902601	-	353	86608351	-	CYB_0870	-	NADH dehydrogenase subunit H
848	 60.29	0	902718..902921	-	67	86608352	-	CYB_0871	-	hypothetical protein
849	 58.35	0	902951..904129	-	392	86608353	-	CYB_0872	-	NAD(P)H-quinone oxidoreductase subunit H
850	 62.96	+1	904305..904628	+	107	86608354	-	CYB_0873	-	hypothetical protein
851	 56.99	0	904686..905243	-	185	86608355	-	CYB_0874	-	hypothetical protein
852	 58.77	0	905387..905614	-	75	86608356	-	CYB_0875	-	hypothetical protein
853	 52.47	-1	905586..905747	-	53	86608357	-	CYB_0876	-	hypothetical protein
854	 62.59	+1	905701..906363	+	220	86608358	ureG	CYB_0877	-	urease accessory protein UreG
855	 61.81	0	906381..907163	+	260	86608359	ureD	CYB_0878	-	urease accessory protein UreD
856	 58.35	0	907215..908729	+	504	86608360	-	CYB_0879	-	hypothetical protein
857	 60.46	0	909072..909683	+	203	86608361	-	CYB_0882	-	hypothetical protein
858	 62.53	0	909611..910528	-	305	86608362	-	CYB_0881	-	alpha/beta fold family hydrolase
859	 56.91	0	910559..911224	-	221	86608363	-	CYB_0883	-	Crp/FNR family transcriptional regulator
860	 61.03	0	911641..912438	+	265	86608364	surE-1	CYB_0884	-	acid phosphatase SurE
861	 56.36	0	912608..918244	-	1878	86608365	-	CYB_0885	-	putative helicase
862	 50.68	-1	918277..919602	-	441	86608366	-	CYB_0886	-	hypothetical protein
863	 55.22	0	919615..921195	-	526	86608367	-	CYB_0887	-	hypothetical protein
864	 57.58	0	921380..921841	-	153	86608368	-	CYB_0888	-	hypothetical protein
865	 60.12	0	921848..922504	-	218	86608369	hisH	CYB_0889	-	imidazole glycerol phosphate synthase subunit HisH
866	 57.80	0	922573..923790	+	405	86608370	-	CYB_0890	-	coproporphyrinogen III oxidase
867	 55.28	0	923978..924469	-	163	86608371	-	CYB_0891	-	nucleotide-binding protein
868	 58.18	0	924587..925423	+	278	86608372	-	CYB_0892	-	short chain dehydrogenase/reductase family oxidoreductase
869	 56.56	0	925552..925917	+	121	86608373	-	CYB_0894	-	FHA domain-containing protein
870	 63.03	+1	925904..927250	-	448	86608374	-	CYB_0893	-	polysaccharide biosynthesis family protein
871	 64.24	+1	927346..929199	+	617	86608375	-	CYB_0895	-	penicillin-binding protein
872	 54.25	-1	929515..929820	+	101	86608376	hup-2	CYB_0896	-	DNA-binding protein HU
873	 63.05	+1	929856..930989	+	377	86608377	cobD-1	CYB_0897	-	threonine-phosphate decarboxylase
874	 61.06	0	931015..931674	+	219	86608378	-	CYB_0898	-	hypothetical protein
875	 59.52	0	931957..932838	+	293	86608379	-	CYB_0899	-	hypothetical protein
876	 62.69	+1	932848..933651	-	267	86608380	-	CYB_0900	-	hypothetical protein
877	 61.09	0	933678..934340	-	220	86608381	purN	CYB_0901	-	phosphoribosylglycinamide formyltransferase
878	 55.21	0	934371..934466	-	31	86608382	-	CYB_0902	-	hypothetical protein
879	 59.46	0	934438..934659	+	73	86608383	-	CYB_0903	-	hypothetical protein
880	 60.44	0	934708..935205	+	165	86608384	-	CYB_0904	-	hypothetical protein
881	 59.24	0	935223..935801	+	192	86608385	aat	CYB_0905	-	leucyl/phenylalanyl-tRNA--protein transferase
882	 56.29	0	935939..936439	+	166	86608386	-	CYB_0906	-	low molecular weight phosphotyrosine protein phosphatase family protein
883	 46.05	-2	936730..937020	-	96	86608387	-	CYB_0907	-	nucleotidyltransferase domain-containing protein
884	 61.39	0	940185..944147	+	1320	86608388	chlH	CYB_0908	-	magnesium chelatase
885	 63.85	+1	944225..945076	-	283	86608389	gspO	CYB_0909	-	prepilin peptidase
886	 56.22	0	945217..945417	-	66	86608390	-	CYB_0910	-	hypothetical protein
887	 59.14	0	945778..948474	-	898	86608391	cphA	CYB_0911	-	cyanophycin synthetase
888	 64.21	+1	948732..951008	+	758	86608392	-	CYB_0912	-	DNA internalization competence protein
889	 61.40	0	951191..951475	-	94	86608393	-	CYB_0913	-	hypothetical protein
890	 57.21	0	951715..952518	+	267	86608394	-	CYB_0914	-	stomatin/podocin/band 7/nephrosis.2/SPFH (stomatin) family protein
891	 58.36	0	952599..953537	+	312	86608395	-	CYB_0915	-	HflC/HflK family protein
892	 60.43	0	953731..954756	+	341	86608396	-	CYB_0917	-	response regulator
893	 62.34	0	954734..955426	-	230	86608397	-	CYB_0916	-	ComF family protein
894	 60.78	0	955636..956043	+	135	86608398	rpsL	CYB_0918	-	30S ribosomal protein S12
895	 61.78	0	956127..956597	+	156	86608399	rpsG	CYB_0919	-	30S ribosomal protein S7
896	 58.10	0	956750..958873	+	707	86608400	fusA	CYB_0920	-	elongation factor G
897	 58.54	0	958905..960134	+	409	86608401	tuf	CYB_0921	-	elongation factor Tu
898	 55.97	0	960259..960576	+	105	86608402	rpsJ	CYB_0922	-	30S ribosomal protein S10
899	 61.56	0	960698..961558	+	286	86608403	dapB	CYB_0924	-	dihydrodipicolinate reductase
900	 63.40	+1	961555..962472	-	305	86608404	-	CYB_0923	-	methylenetetrahydrofolate reductase family protein
901	 64.60	+1	962550..964145	-	531	86608405	-	CYB_0925	-	hypothetical protein
902	 62.42	0	964370..965122	-	250	86608406	-	CYB_0926	-	hypothetical protein
903	 63.68	+1	965343..966683	-	446	86608407	-	CYB_0927	-	oxidoreductase, FAD-dependent
904	 61.30	0	966778..967392	-	204	86608408	-	CYB_0928	-	hypothetical protein
905	 60.79	0	967382..968164	-	260	86608409	tatC	CYB_0929	-	Sec-independent protein translocase TatC
906	 61.21	0	968327..969535	-	402	86608410	-	CYB_0930	-	polar amino acid ABC transporter permease
907	 61.89	0	969539..970711	-	390	86608411	-	CYB_0931	-	polar amino acid ABC transporter permease
908	 60.02	0	970810..971847	-	345	86608412	-	CYB_0932	-	polar amino acid ABC transporter periplasmic amino acid-binding protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.