IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
552	 58.64	0	573326..574858	+	510	86608056	-	CYB_0564	-	UvrD/Rep family helicase
553	 59.15	0	575034..575858	-	274	86608057	menB	CYB_0565	-	naphthoate synthase
554	 63.27	+1	575976..577478	-	500	86608058	cobA/hemD	CYB_0566	-	uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase
555	 63.74	+1	577614..577784	-	56	86608059	-	CYB_0567	-	hypothetical protein
556	 63.50	+1	577660..578670	+	336	86608060	-	CYB_0569	-	taurine ABC transporter periplasmic substrate-binding protein
557	 60.49	0	578667..579200	-	177	86608061	-	CYB_0568	-	putative phycobilisome linker polypeptide
558	 57.06	0	579742..580272	+	176	86608062	-	CYB_0571	-	iron-sulfur cluster-binding protein
559	 43.70	-2	580213..580347	-	44	86608063	-	CYB_0570	-	hypothetical protein
560	 55.07	0	580504..581184	+	226	86608064	-	CYB_0572	-	putative bacteriochlorophyll 4-vinyl reductase
561	 57.80	0	581244..581525	+	93	86608065	-	CYB_0573	-	hypothetical protein
562	 59.09	0	581587..582180	+	197	86608066	-	CYB_0574	-	hypothetical protein
563	 54.14	-1	582205..582675	+	156	86608067	-	CYB_0575	-	phycobilisome protein
564	 61.59	0	582864..583553	+	229	86608068	-	CYB_0576	-	V4R domain-containing protein
565	 62.29	0	583591..584298	-	235	86608069	-	CYB_0577	-	hypothetical protein
566	 62.09	0	584583..585827	+	414	86608070	-	CYB_0578	-	S1C family peptidase
567	 62.88	+1	586180..587103	+	307	86608071	-	CYB_0579	-	quaternary amine ABC transporter periplasmic substrate-binding protein
568	 62.75	+1	587130..588098	+	322	86608072	-	CYB_0580	-	quaternary amine ABC  transporter ATP-binding protein
569	 63.43	+1	588095..588712	+	205	86608073	-	CYB_0581	-	quaternary amine ABC transporter permease
570	 60.74	0	588838..589461	+	207	86608074	-	CYB_0582	-	RNA polymerase sigma factor
571	 60.49	0	590399..591046	+	215	86608075	-	CYB_0584	-	VanW family protein
572	 57.41	0	592183..593079	-	298	86608076	-	CYB_0585	-	CRISPR-associated protein APE2256 family
573	 58.54	0	593129..593842	-	237	86608077	-	CYB_0586	-	hypothetical protein
574	 60.74	0	593853..594932	-	359	86608078	-	CYB_0587	-	hypothetical protein
575	 58.28	0	594935..595387	-	150	86608079	-	CYB_0588	-	hypothetical protein
576	 60.45	0	595384..596364	-	326	86608080	-	CYB_0589	-	CRISPR-associated RAMP family protein
577	 60.45	0	596531..597382	-	283	86608081	-	CYB_0590	-	CRISPR-associated Csm3 family protein
578	 49.85	-2	597402..598049	-	215	86608082	-	CYB_0591	-	hypothetical protein
579	 53.29	-1	598053..598493	-	146	86608083	-	CYB_0592	-	hypothetical protein
580	 62.94	+1	598490..599722	-	410	86608084	csx10	CYB_0593	-	CRISPR-associated RAMP Csx10 family protein
581	 65.84	+1	599722..600444	-	240	86608085	-	CYB_0594	-	CRISPR-associated Csm3 family protein
582	 60.88	0	600444..602654	-	736	86608086	crm2-1	CYB_0595	-	CRISPR-associated RAMP Crm2 family protein
583	 62.18	0	603175..604356	+	393	86608087	cas6	CYB_0596	-	CRISPR-associated Cas family protein
584	 56.95	0	605551..606744	+	397	86608088	-	CYB_0598	-	ISSoc1, transposase
585	 58.78	0	606716..608173	-	485	86608089	-	CYB_0597	-	hypothetical protein
586	 61.51	0	608339..609307	+	322	86608090	csx3	CYB_0599	-	CRISPR-associated Csx3 family protein
587	 62.63	+1	609411..610202	+	263	86608091	-	CYB_0600	-	ADP-ribosylglycohydrolase family protein
588	 55.74	0	610278..611165	-	295	86608092	-	CYB_0601	-	nitrate ABC transporter, ATP-binding protein NtrD
589	 57.01	0	611237..613234	-	665	86608093	ntrC-2	CYB_0602	-	nitrate ABC transporter, ATP-binding proteins NtrC
590	 52.42	-1	613303..614130	-	275	86608094	ntrB-2	CYB_0603	-	nitrate ABC transporter, permease protein
591	 57.55	0	614652..615956	-	434	86608095	-	CYB_0604	-	nitrate/nitrite/cyanate ABC transporter periplasmic substrate-binding protein
592	 61.93	0	616167..617264	+	365	86608096	-	CYB_0605	-	putative tocopherol cyclase
593	 60.93	0	617632..620106	+	824	86608097	clpC	CYB_0607	-	Clp protease, ATP-binding subunit ClpC
594	 56.13	0	620234..620869	+	211	86608098	clpP-1	CYB_0608	-	ATP-dependent Clp protease-like protein
595	 57.03	0	621483..622094	+	203	86608099	clpP	CYB_0610	-	ATP-dependent Clp protease proteolytic subunit
596	 61.72	0	622202..622504	+	100	86608100	-	CYB_0611	-	hypothetical protein
597	 59.52	0	622509..623096	-	195	86608101	-	CYB_0612	-	hypothetical protein
598	 62.72	+1	623105..624499	+	464	86608102	-	CYB_0613	-	malate dehydrogenase (oxaloacetate-decarboxylating)
599	 60.03	0	624600..625292	-	230	86608103	-	CYB_0614	-	CRISPR-associated protein APE2256 family
600	 59.71	0	625289..625561	-	90	86608104	-	CYB_0615	-	hypothetical protein
601	 64.71	+1	625763..625966	+	67	86608105	-	CYB_0616	-	hypothetical protein
602	 60.27	0	626315..626986	+	223	86608106	-	CYB_0618	-	hypothetical protein
603	 61.35	0	626983..629181	-	732	86608107	-	CYB_0617	-	C14 family peptidase
604	 56.90	0	629485..630702	+	405	86608108	-	CYB_0620	-	ISSoc1, transposase
605	 57.80	0	630674..630955	-	93	86608109	-	CYB_0619	-	hypothetical protein
606	 57.14	0	631020..631208	-	62	86608110	-	CYB_0621	-	hypothetical protein
607	 59.06	0	631292..633211	+	639	86608111	-	CYB_0623	-	hypothetical protein
608	 57.89	0	633208..633606	-	132	86608112	-	CYB_0622	-	hypothetical protein
609	 59.37	0	634116..635006	+	296	86608113	tyrA	CYB_0624	-	prephenate dehydrogenase
610	 59.87	0	635075..635824	+	249	86608114	-	CYB_0625	-	cytochrome c biogenesis membrane protein
611	 58.30	0	635936..637345	+	469	86608115	-	CYB_0626	-	cytochrome c-type biogenesis protein ResB, putative
612	 56.70	0	637687..637947	+	86	86608116	-	CYB_0628	-	ferredoxin-thioredoxin reductase, variable subunit
613	 55.91	0	637944..638417	-	157	86608117	-	CYB_0627	-	hypothetical protein
614	 55.28	0	638440..638562	+	40	86608118	-	CYB_0629	-	hypothetical protein
615	 55.83	0	638633..639850	+	405	86608119	-	CYB_0630	-	ISSoc1, transposase
616	 60.46	0	639992..641908	+	638	86608120	hflB	CYB_0631	-	cell division protein FtsH
617	 59.85	0	642012..644168	-	718	86608121	-	CYB_0632	-	alpha-glucan phosphorylase, putative
618	 60.24	0	644667..645770	-	367	86608122	-	CYB_0633	-	SpoIID/LytB domain-containing protein
619	 57.81	0	645805..645996	-	63	86608123	-	CYB_0634	-	hypothetical protein
620	 65.89	+1	646125..646640	-	171	86608124	-	CYB_0635	-	cytidine and deoxycytidylate deaminase family protein
621	 61.11	0	646851..648092	+	413	86608125	-	CYB_0636	-	S1C family peptidase
622	 61.12	0	648160..649764	+	534	86608126	-	CYB_0637	-	protein kinase
623	 49.21	-2	650296..650421	+	41	86608127	-	CYB_0638	-	hypothetical protein
624	 59.12	0	651097..651255	+	52	86608128	-	CYB_0639	-	hypothetical protein
625	 43.38	-2	651867..652274	+	135	86608129	-	CYB_0641	-	ISSoc13, transposase orfB
626	 63.03	+1	652537..653388	+	283	86608130	rbgA	CYB_0642	-	ribosomal biogenesis GTPase
627	 58.80	0	653484..654602	-	372	86608131	-	CYB_0643	-	radical SAM domain-containing protein
628	 55.46	0	654687..655052	+	121	86608132	-	CYB_0644	-	hypothetical protein
629	 56.81	0	655133..655558	+	141	86608133	-	CYB_0645	-	hypothetical protein
630	 54.13	-1	656104..657579	+	491	86608134	glgA	CYB_0646	-	glycogen synthase
631	 58.96	0	657739..659346	+	535	86608135	-	CYB_0647	-	glycosy hydrolase family protein
632	 63.38	+1	659644..661440	-	598	86608136	ilvB	CYB_0648	-	acetolactate synthase 3 catalytic subunit
633	 59.25	0	661655..663232	+	525	86608137	-	CYB_0649	-	dolichyl-phosphate-mannose-protein mannosyltransferase
634	 58.31	0	663342..664406	+	354	86608138	-	CYB_0650	-	oxidoreductase, NAD-binding
635	 59.56	0	665042..666871	-	609	86608139	-	CYB_0651	-	putative membrane-bound protease
636	 57.58	0	667103..667960	+	285	86608140	-	CYB_0652	-	hypothetical protein
637	 59.88	0	668015..669001	-	328	86608141	-	CYB_0653	-	prephenate dehydratase
638	 53.93	-1	669015..669383	-	122	86608142	-	CYB_0654	-	hypothetical protein
639	 61.10	0	669567..670841	-	424	86608143	alr	CYB_0655	-	alanine racemase
640	 61.30	0	670886..672040	-	384	86608144	sppA-1	CYB_0656	-	signal peptide peptidase SppA, 36K type
641	 54.07	-1	672274..672543	-	89	86608145	-	CYB_0658	-	hypothetical protein
642	 56.27	0	672563..672841	-	92	86608146	-	CYB_0659	-	hypothetical protein
643	 60.02	0	673292..674284	-	330	86608147	cyoE	CYB_0660	-	protoheme IX farnesyltransferase
644	 59.38	0	674338..675297	-	319	86608148	-	CYB_0661	-	cytochrome oxidase assembly protein
645	 58.75	0	675947..677032	-	361	86608149	-	CYB_0662	-	RNA polymerase sigma factor, group 1
646	 55.39	0	677242..677640	+	132	86608150	-	CYB_0663	-	hypothetical protein
647	 53.83	-1	677971..678336	+	121	86608151	-	CYB_0664	-	hypothetical protein
648	 58.78	0	679816..680487	-	223	86608152	-	CYB_0666	-	phosphatidate cytidylyltransferase, putative
649	 59.14	0	680497..680868	-	123	86608153	-	CYB_0667	-	cytochrome c family protein
650	 64.00	+1	681090..682925	-	611	86608154	-	CYB_0668	-	glycosyl hydrolase domain-containing protein
651	 63.14	+1	683073..684488	-	471	86608155	recQ	CYB_0669	-	ATP-dependent DNA helicase RecQ
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.