IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
499	 57.66	0	524077..524187	+	36	86608003	-	CYB_0510	-	hypothetical protein
500	 60.29	0	524190..525287	+	365	86608004	tgt	CYB_0511	-	queuine tRNA-ribosyltransferase
501	 56.37	0	525407..526018	+	203	86608005	-	CYB_0512	-	hypothetical protein
502	 58.45	0	526113..527378	+	421	86608006	-	CYB_0513	-	hypothetical protein
503	 63.30	+1	527385..527681	+	98	86608007	-	CYB_0514	-	hypothetical protein
504	 57.42	0	527704..528363	-	219	86608008	-	CYB_0515	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein
505	 61.62	0	528509..531463	+	984	86608009	-	CYB_0516	-	proline dehydrogenase/1-pyrroline-5 carboxylate dehydrogenase
506	 61.25	0	531483..532535	-	350	86608010	-	CYB_0517	-	CsgG family protein
507	 60.90	0	532982..534160	-	392	86608011	-	CYB_0518	-	ISSoc9, transposase
508	 62.37	0	534374..535513	+	379	86608012	proB	CYB_0519	-	gamma-glutamyl kinase
509	 60.33	0	535600..536703	-	367	86608013	-	CYB_0520	-	hypothetical protein
510	 55.56	0	536702..536800	+	32	86608014	-	CYB_0521	-	hypothetical protein
511	 62.24	0	536868..538766	-	632	86608015	-	CYB_0522	-	serine/threonine protein kinase
512	 60.00	0	538941..539405	-	154	86608016	bcp-1	CYB_0523	-	bacterioferritin comigratory protein
513	 57.17	0	539421..539978	-	185	86608017	infC	CYB_0524	-	translation initiation factor IF-3
514	 57.37	0	540238..540549	+	103	86608018	-	CYB_0525	-	hypothetical protein
515	 62.34	0	540591..541976	+	461	86608019	aspA	CYB_0526	-	aspartate ammonia-lyase
516	 57.09	0	542017..542757	+	246	86608020	-	CYB_0527	-	hypothetical protein
517	 58.89	0	542837..544225	+	462	86608021	-	CYB_0528	-	sugar  glycoside-pentoside-hexuronide (GPH):cation symporter family protein
518	 48.07	-2	544295..544735	-	146	86608022	-	CYB_0529	-	ISSoc10, orfA transposase
519	 53.41	-1	544793..546037	+	414	86608023	-	CYB_0530	-	ISSoc10, orfB transposase
520	 59.31	0	546440..546901	-	153	86608024	-	CYB_0532	-	hypothetical protein
521	 58.63	0	547075..547995	-	306	86608025	chlG	CYB_0533	-	bacteriochlorophyll/chlorophyll a synthase
522	 58.36	0	548802..549620	-	272	86608026	-	CYB_0534	-	phytanoyl-CoA dioxygenase PhyH family protein
523	 61.21	0	549636..551156	-	506	86608027	trpE	CYB_0535	-	anthranilate synthase component I
524	 53.55	-1	551297..551845	+	182	86608028	-	CYB_0536	-	NUDIX family hydrolase
525	 61.41	0	552117..552782	+	221	86608029	-	CYB_0537	-	hypothetical protein
526	 61.55	0	552872..553828	-	318	86608030	-	CYB_0538	-	M23B family peptidase
527	 59.60	0	553989..555035	+	348	86608031	-	CYB_0539	-	hypothetical protein
528	 60.04	0	555082..556122	+	346	86608032	-	CYB_0540	-	putative low specificity L-threonine aldolase
529	 58.67	0	556212..556736	-	174	86608033	lspA	CYB_0541	-	lipoprotein signal peptidase
530	 61.35	0	556733..556939	-	68	86608034	-	CYB_0542	-	hypothetical protein
531	 63.49	+1	556802..556927	+	41	86608035	-	CYB_0543	-	hypothetical protein
532	 57.22	0	556997..557377	-	126	86608036	-	CYB_0544	-	hypothetical protein
533	 59.33	0	557377..558180	-	267	86608037	-	CYB_0545	-	polyamine/opine/phosphonate ABC transporter permease
534	 62.76	+1	558347..558961	+	204	86608038	ruvA	CYB_0546	-	Holliday junction DNA helicase motor protein
535	 61.58	0	558958..559566	+	202	86608039	nadD	CYB_0547	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
536	 56.02	0	559713..560867	+	384	86608040	-	CYB_0548	-	ISSoc8, transposase
537	 59.44	0	561039..561287	-	82	86608041	psaC	CYB_0549	-	photosystem I subunit VII
538	 58.96	0	561440..561880	+	146	86608042	-	CYB_0550	-	hypothetical protein
539	 61.71	0	561907..562269	-	120	86608043	-	CYB_0551	-	hypothetical protein
540	 60.59	0	562273..562914	-	213	86608044	-	CYB_0552	-	hypothetical protein
541	 59.75	0	563050..564351	-	433	86608045	-	CYB_0553	-	putative gamma-glutamyl phosphate reductase
542	 57.62	0	564489..564941	-	150	86608046	-	CYB_0554	-	hypothetical protein
543	 54.41	0	564999..566426	-	475	86608047	-	CYB_0555	-	hypothetical protein
544	 61.88	0	566647..567753	+	368	86608048	-	CYB_0556	-	putative glutamate--cysteine ligase
545	 55.56	0	567966..568712	-	248	86608049	-	CYB_0557	-	hypothetical protein
546	 52.14	-1	568793..569143	-	116	86608050	-	CYB_0558	-	hypothetical protein
547	 60.16	0	569327..569710	+	127	86608051	-	CYB_0559	-	putative endoribonuclease L-PSP
548	 62.96	+1	569728..569997	-	89	86608052	-	CYB_0560	-	hypothetical protein
549	 60.29	0	570229..571530	+	433	86608053	-	CYB_0561	-	drug:H+ antiporter-1 family protein
550	 59.50	0	571691..572527	+	278	86608054	-	CYB_0562	-	SpoIID/LytB domain-containing protein
551	 51.26	-1	572901..573218	+	105	86608055	-	CYB_0563	-	hypothetical protein
552	 58.64	0	573326..574858	+	510	86608056	-	CYB_0564	-	UvrD/Rep family helicase
553	 59.15	0	575034..575858	-	274	86608057	menB	CYB_0565	-	naphthoate synthase
554	 63.27	+1	575976..577478	-	500	86608058	cobA/hemD	CYB_0566	-	uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase
555	 63.74	+1	577614..577784	-	56	86608059	-	CYB_0567	-	hypothetical protein
556	 63.50	+1	577660..578670	+	336	86608060	-	CYB_0569	-	taurine ABC transporter periplasmic substrate-binding protein
557	 60.49	0	578667..579200	-	177	86608061	-	CYB_0568	-	putative phycobilisome linker polypeptide
558	 57.06	0	579742..580272	+	176	86608062	-	CYB_0571	-	iron-sulfur cluster-binding protein
559	 43.70	-2	580213..580347	-	44	86608063	-	CYB_0570	-	hypothetical protein
560	 55.07	0	580504..581184	+	226	86608064	-	CYB_0572	-	putative bacteriochlorophyll 4-vinyl reductase
561	 57.80	0	581244..581525	+	93	86608065	-	CYB_0573	-	hypothetical protein
562	 59.09	0	581587..582180	+	197	86608066	-	CYB_0574	-	hypothetical protein
563	 54.14	-1	582205..582675	+	156	86608067	-	CYB_0575	-	phycobilisome protein
564	 61.59	0	582864..583553	+	229	86608068	-	CYB_0576	-	V4R domain-containing protein
565	 62.29	0	583591..584298	-	235	86608069	-	CYB_0577	-	hypothetical protein
566	 62.09	0	584583..585827	+	414	86608070	-	CYB_0578	-	S1C family peptidase
567	 62.88	+1	586180..587103	+	307	86608071	-	CYB_0579	-	quaternary amine ABC transporter periplasmic substrate-binding protein
568	 62.75	+1	587130..588098	+	322	86608072	-	CYB_0580	-	quaternary amine ABC  transporter ATP-binding protein
569	 63.43	+1	588095..588712	+	205	86608073	-	CYB_0581	-	quaternary amine ABC transporter permease
570	 60.74	0	588838..589461	+	207	86608074	-	CYB_0582	-	RNA polymerase sigma factor
571	 60.49	0	590399..591046	+	215	86608075	-	CYB_0584	-	VanW family protein
572	 57.41	0	592183..593079	-	298	86608076	-	CYB_0585	-	CRISPR-associated protein APE2256 family
573	 58.54	0	593129..593842	-	237	86608077	-	CYB_0586	-	hypothetical protein
574	 60.74	0	593853..594932	-	359	86608078	-	CYB_0587	-	hypothetical protein
575	 58.28	0	594935..595387	-	150	86608079	-	CYB_0588	-	hypothetical protein
576	 60.45	0	595384..596364	-	326	86608080	-	CYB_0589	-	CRISPR-associated RAMP family protein
577	 60.45	0	596531..597382	-	283	86608081	-	CYB_0590	-	CRISPR-associated Csm3 family protein
578	 49.85	-2	597402..598049	-	215	86608082	-	CYB_0591	-	hypothetical protein
579	 53.29	-1	598053..598493	-	146	86608083	-	CYB_0592	-	hypothetical protein
580	 62.94	+1	598490..599722	-	410	86608084	csx10	CYB_0593	-	CRISPR-associated RAMP Csx10 family protein
581	 65.84	+1	599722..600444	-	240	86608085	-	CYB_0594	-	CRISPR-associated Csm3 family protein
582	 60.88	0	600444..602654	-	736	86608086	crm2-1	CYB_0595	-	CRISPR-associated RAMP Crm2 family protein
583	 62.18	0	603175..604356	+	393	86608087	cas6	CYB_0596	-	CRISPR-associated Cas family protein
584	 56.95	0	605551..606744	+	397	86608088	-	CYB_0598	-	ISSoc1, transposase
585	 58.78	0	606716..608173	-	485	86608089	-	CYB_0597	-	hypothetical protein
586	 61.51	0	608339..609307	+	322	86608090	csx3	CYB_0599	-	CRISPR-associated Csx3 family protein
587	 62.63	+1	609411..610202	+	263	86608091	-	CYB_0600	-	ADP-ribosylglycohydrolase family protein
588	 55.74	0	610278..611165	-	295	86608092	-	CYB_0601	-	nitrate ABC transporter, ATP-binding protein NtrD
589	 57.01	0	611237..613234	-	665	86608093	ntrC-2	CYB_0602	-	nitrate ABC transporter, ATP-binding proteins NtrC
590	 52.42	-1	613303..614130	-	275	86608094	ntrB-2	CYB_0603	-	nitrate ABC transporter, permease protein
591	 57.55	0	614652..615956	-	434	86608095	-	CYB_0604	-	nitrate/nitrite/cyanate ABC transporter periplasmic substrate-binding protein
592	 61.93	0	616167..617264	+	365	86608096	-	CYB_0605	-	putative tocopherol cyclase
593	 60.93	0	617632..620106	+	824	86608097	clpC	CYB_0607	-	Clp protease, ATP-binding subunit ClpC
594	 56.13	0	620234..620869	+	211	86608098	clpP-1	CYB_0608	-	ATP-dependent Clp protease-like protein
595	 57.03	0	621483..622094	+	203	86608099	clpP	CYB_0610	-	ATP-dependent Clp protease proteolytic subunit
596	 61.72	0	622202..622504	+	100	86608100	-	CYB_0611	-	hypothetical protein
597	 59.52	0	622509..623096	-	195	86608101	-	CYB_0612	-	hypothetical protein
598	 62.72	+1	623105..624499	+	464	86608102	-	CYB_0613	-	malate dehydrogenase (oxaloacetate-decarboxylating)
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.