IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
459	 49.95	-2	474361..476334	-	657	86607962	-	CYB_0468	-	TPR domain-containing protein
460	 52.08	-1	476536..478557	-	673	86607963	-	CYB_0469	-	FkbM family methyltransferase
461	 54.01	-1	478587..480641	-	684	86607964	-	CYB_0470	-	FkbM family methyltransferase
462	 59.03	0	480813..480956	+	47	86607965	-	CYB_0471	-	hypothetical protein
463	 56.85	0	481589..482800	+	403	86607966	-	CYB_0472	-	ISSoc1, transposase
464	 50.44	-1	482827..483726	+	299	86607967	-	CYB_0473	-	2OG-Fe(II) oxygenase family oxidoreductase
465	 46.19	-2	483699..484709	+	336	86607968	-	CYB_0474	-	hypothetical protein
466	 52.33	-1	484805..485320	-	171	86607969	-	CYB_0475	-	general secretion pathway protein G, putative
467	 48.27	-2	485683..489318	+	1211	86607970	-	CYB_0476	-	FkbM family methyltransferase
468	 48.15	-2	489323..489457	+	44	86607971	-	CYB_0477	-	hypothetical protein
469	 57.23	0	489533..490051	-	172	86607972	-	CYB_0478	-	purine phosphoribosyltransferase, putative
470	 57.65	0	490117..491037	-	306	86607973	ilvE	CYB_0479	-	branched-chain amino acid aminotransferase
471	 50.19	-2	491706..491966	+	86	86607974	-	CYB_0480	-	peptidase propeptide/YPEB domain-containing protein
472	 58.42	0	492232..493674	+	480	86607975	-	CYB_0481	-	HlyC/CorC (HCC) family transporter
473	 59.92	0	493690..495231	-	513	86607976	-	CYB_0482	-	Orn/Lys/Arg decarboxylase
474	 57.50	0	495354..495920	+	188	86607977	-	CYB_0483	-	hypothetical protein
475	 55.33	0	496114..498204	-	696	86607978	-	CYB_0484	-	type IV pilus secretin PilQ, putative
476	 57.12	0	498467..499168	-	233	86607979	-	CYB_0485	-	hypothetical protein
477	 57.34	0	499168..499875	-	235	86607980	pilN	CYB_0486	-	type 4 fimbrial biogenesis protein PilN
478	 58.53	0	499936..501054	-	372	86607981	pilM	CYB_0487	-	type IV pilus assembly protein PilM
479	 58.86	0	501274..502899	-	541	86607982	kaiC	CYB_0488	-	circadian clock protein KaiC
480	 53.80	-1	502928..503230	-	100	86607983	kaiB	CYB_0489	-	circadian clock protein KaiB
481	 58.21	0	503233..504237	-	334	86607984	kaiA	CYB_0490	-	circadian clock protein KaiA
482	 61.97	0	504359..505294	+	311	86607985	-	CYB_0491	-	inosine-uridine preferring nucleoside hydrolase family protein
483	 62.04	0	505373..505891	+	172	86607986	pgsA	CYB_0492	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
484	 58.78	0	506211..506717	+	168	86607987	ruvC	CYB_0493	-	crossover junction endodeoxyribonuclease RuvC
485	 59.94	0	506813..507466	+	217	86607988	-	CYB_0494	-	ATP-dependent protease La
486	 53.74	-1	507475..507621	-	48	86607989	-	CYB_0495	-	hypothetical protein
487	 60.25	0	507620..508351	+	243	86607990	-	CYB_0496	-	hypothetical protein
488	 51.42	-1	508358..509446	+	362	86607991	-	CYB_0497	-	hypothetical protein
489	 54.55	0	509676..510863	+	395	86607992	-	CYB_0498	-	hypothetical protein
490	 50.88	-1	510860..510973	+	37	86607993	-	CYB_0499	-	hypothetical protein
491	 60.14	0	511015..512409	+	464	86607994	rumA	CYB_0500	-	23S rRNA (uracil-5-)-methyltransferase RumA
492	 62.70	+1	513959..514663	-	234	86607996	-	CYB_0502	-	hypothetical protein
493	 59.05	0	514667..515191	-	174	86607997	-	CYB_0503	-	acetyltransferase
494	 56.67	0	516636..516815	+	59	86607998	-	CYB_0504	-	hypothetical protein
495	 55.74	0	516914..518011	+	365	86607999	-	CYB_0505	-	polyamine transporter, periplasmic polyamine-binding protein
496	 50.29	-2	518074..518244	+	56	86608000	-	CYB_0506	-	CAB/ELIP/HLIP family protein
497	 57.89	0	518503..523083	-	1526	86608001	-	CYB_0507	-	sensory box histidine kinase/response regulator
498	 49.74	-2	523547..523924	+	125	86608002	-	CYB_0508	-	hypothetical protein
499	 57.66	0	524077..524187	+	36	86608003	-	CYB_0510	-	hypothetical protein
500	 60.29	0	524190..525287	+	365	86608004	tgt	CYB_0511	-	queuine tRNA-ribosyltransferase
501	 56.37	0	525407..526018	+	203	86608005	-	CYB_0512	-	hypothetical protein
502	 58.45	0	526113..527378	+	421	86608006	-	CYB_0513	-	hypothetical protein
503	 63.30	+1	527385..527681	+	98	86608007	-	CYB_0514	-	hypothetical protein
504	 57.42	0	527704..528363	-	219	86608008	-	CYB_0515	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein
505	 61.62	0	528509..531463	+	984	86608009	-	CYB_0516	-	proline dehydrogenase/1-pyrroline-5 carboxylate dehydrogenase
506	 61.25	0	531483..532535	-	350	86608010	-	CYB_0517	-	CsgG family protein
507	 60.90	0	532982..534160	-	392	86608011	-	CYB_0518	-	ISSoc9, transposase
508	 62.37	0	534374..535513	+	379	86608012	proB	CYB_0519	-	gamma-glutamyl kinase
509	 60.33	0	535600..536703	-	367	86608013	-	CYB_0520	-	hypothetical protein
510	 55.56	0	536702..536800	+	32	86608014	-	CYB_0521	-	hypothetical protein
511	 62.24	0	536868..538766	-	632	86608015	-	CYB_0522	-	serine/threonine protein kinase
512	 60.00	0	538941..539405	-	154	86608016	bcp-1	CYB_0523	-	bacterioferritin comigratory protein
513	 57.17	0	539421..539978	-	185	86608017	infC	CYB_0524	-	translation initiation factor IF-3
514	 57.37	0	540238..540549	+	103	86608018	-	CYB_0525	-	hypothetical protein
515	 62.34	0	540591..541976	+	461	86608019	aspA	CYB_0526	-	aspartate ammonia-lyase
516	 57.09	0	542017..542757	+	246	86608020	-	CYB_0527	-	hypothetical protein
517	 58.89	0	542837..544225	+	462	86608021	-	CYB_0528	-	sugar  glycoside-pentoside-hexuronide (GPH):cation symporter family protein
518	 48.07	-2	544295..544735	-	146	86608022	-	CYB_0529	-	ISSoc10, orfA transposase
519	 53.41	-1	544793..546037	+	414	86608023	-	CYB_0530	-	ISSoc10, orfB transposase
520	 59.31	0	546440..546901	-	153	86608024	-	CYB_0532	-	hypothetical protein
521	 58.63	0	547075..547995	-	306	86608025	chlG	CYB_0533	-	bacteriochlorophyll/chlorophyll a synthase
522	 58.36	0	548802..549620	-	272	86608026	-	CYB_0534	-	phytanoyl-CoA dioxygenase PhyH family protein
523	 61.21	0	549636..551156	-	506	86608027	trpE	CYB_0535	-	anthranilate synthase component I
524	 53.55	-1	551297..551845	+	182	86608028	-	CYB_0536	-	NUDIX family hydrolase
525	 61.41	0	552117..552782	+	221	86608029	-	CYB_0537	-	hypothetical protein
526	 61.55	0	552872..553828	-	318	86608030	-	CYB_0538	-	M23B family peptidase
527	 59.60	0	553989..555035	+	348	86608031	-	CYB_0539	-	hypothetical protein
528	 60.04	0	555082..556122	+	346	86608032	-	CYB_0540	-	putative low specificity L-threonine aldolase
529	 58.67	0	556212..556736	-	174	86608033	lspA	CYB_0541	-	lipoprotein signal peptidase
530	 61.35	0	556733..556939	-	68	86608034	-	CYB_0542	-	hypothetical protein
531	 63.49	+1	556802..556927	+	41	86608035	-	CYB_0543	-	hypothetical protein
532	 57.22	0	556997..557377	-	126	86608036	-	CYB_0544	-	hypothetical protein
533	 59.33	0	557377..558180	-	267	86608037	-	CYB_0545	-	polyamine/opine/phosphonate ABC transporter permease
534	 62.76	+1	558347..558961	+	204	86608038	ruvA	CYB_0546	-	Holliday junction DNA helicase motor protein
535	 61.58	0	558958..559566	+	202	86608039	nadD	CYB_0547	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
536	 56.02	0	559713..560867	+	384	86608040	-	CYB_0548	-	ISSoc8, transposase
537	 59.44	0	561039..561287	-	82	86608041	psaC	CYB_0549	-	photosystem I subunit VII
538	 58.96	0	561440..561880	+	146	86608042	-	CYB_0550	-	hypothetical protein
539	 61.71	0	561907..562269	-	120	86608043	-	CYB_0551	-	hypothetical protein
540	 60.59	0	562273..562914	-	213	86608044	-	CYB_0552	-	hypothetical protein
541	 59.75	0	563050..564351	-	433	86608045	-	CYB_0553	-	putative gamma-glutamyl phosphate reductase
542	 57.62	0	564489..564941	-	150	86608046	-	CYB_0554	-	hypothetical protein
543	 54.41	0	564999..566426	-	475	86608047	-	CYB_0555	-	hypothetical protein
544	 61.88	0	566647..567753	+	368	86608048	-	CYB_0556	-	putative glutamate--cysteine ligase
545	 55.56	0	567966..568712	-	248	86608049	-	CYB_0557	-	hypothetical protein
546	 52.14	-1	568793..569143	-	116	86608050	-	CYB_0558	-	hypothetical protein
547	 60.16	0	569327..569710	+	127	86608051	-	CYB_0559	-	putative endoribonuclease L-PSP
548	 62.96	+1	569728..569997	-	89	86608052	-	CYB_0560	-	hypothetical protein
549	 60.29	0	570229..571530	+	433	86608053	-	CYB_0561	-	drug:H+ antiporter-1 family protein
550	 59.50	0	571691..572527	+	278	86608054	-	CYB_0562	-	SpoIID/LytB domain-containing protein
551	 51.26	-1	572901..573218	+	105	86608055	-	CYB_0563	-	hypothetical protein
552	 58.64	0	573326..574858	+	510	86608056	-	CYB_0564	-	UvrD/Rep family helicase
553	 59.15	0	575034..575858	-	274	86608057	menB	CYB_0565	-	naphthoate synthase
554	 63.27	+1	575976..577478	-	500	86608058	cobA/hemD	CYB_0566	-	uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase
555	 63.74	+1	577614..577784	-	56	86608059	-	CYB_0567	-	hypothetical protein
556	 63.50	+1	577660..578670	+	336	86608060	-	CYB_0569	-	taurine ABC transporter periplasmic substrate-binding protein
557	 60.49	0	578667..579200	-	177	86608061	-	CYB_0568	-	putative phycobilisome linker polypeptide
558	 57.06	0	579742..580272	+	176	86608062	-	CYB_0571	-	iron-sulfur cluster-binding protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.