IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
378	 52.94	-1	400143..400295	-	50	86607881	-	CYB_0384	-	hypothetical protein
379	 43.29	-2	400347..400778	-	143	86607882	-	CYB_0385	-	hypothetical protein
380	 47.73	-2	400775..401392	-	205	86607883	-	CYB_0386	-	hypothetical protein
381	 51.32	-1	401389..402072	-	227	86607884	-	CYB_0387	-	hypothetical protein
382	 58.20	0	402139..403095	-	318	86607885	-	CYB_0388	-	carbohydrate ABC transporter permease
383	 61.71	0	403102..404151	-	349	86607886	-	CYB_0389	-	carbohydrate ABC transporter permease
384	 61.55	0	404141..405703	-	520	86607887	-	CYB_0390	-	carbohydrate ABC transporter ATP-binding protein
385	 57.53	0	405675..406703	-	342	86607888	-	CYB_0391	-	Bmp family membrane protein
386	 63.14	+1	407105..408379	+	424	86607889	codA	CYB_0393	-	cytosine deaminase
387	 59.91	0	408376..408834	-	152	86607890	-	CYB_0392	-	hypothetical protein
388	 61.24	0	408866..409492	-	208	86607891	-	CYB_0394	-	5-formyltetrahydrofolate cyclo-ligase family protein
389	 61.08	0	409537..410001	-	154	86607892	-	CYB_0395	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
390	 57.71	0	410061..410741	-	226	86607893	-	CYB_0396	-	hypothetical protein
391	 65.45	+1	410818..412713	+	631	86607894	cbiG/cobJ	CYB_0397	-	cbiG protein/precorrin-3B C17-methyltransferase
392	 62.14	0	412730..414517	-	595	86607895	modB	CYB_0398	-	molybdate ABC transporter, permease protein
393	 57.68	0	414555..415322	-	255	86607896	modA	CYB_0399	-	molybdate ABC transporter, periplasmic molybdate-binding protein
394	 46.85	-2	415426..415536	-	36	86607897	-	CYB_0400	-	hypothetical protein
395	 45.24	-2	415575..415784	+	69	86607898	-	CYB_0401	-	molybdenum-pterin binding domain-containing protein
396	 55.29	0	415813..417465	-	550	86607899	-	CYB_0402	-	transcriptional regulator PatB
397	 52.33	-1	417808..418065	-	85	86607900	-	CYB_0403	-	hypothetical protein
398	 49.47	-2	418165..418542	-	125	86607901	-	CYB_0404	-	FeoA domain-containing protein
399	 49.00	-2	418571..418870	-	99	86607902	-	CYB_0405	-	ferredoxin, 2Fe-2S
400	 55.46	0	418913..419278	-	121	86607903	nifW	CYB_0406	-	nitrogenase stabilizing/protective protein nifW
401	 56.82	0	419275..419538	-	87	86607904	-	CYB_0407	-	hypothetical protein
402	 59.65	0	419605..420060	-	151	86607905	-	CYB_0408	-	hypothetical protein
403	 60.24	0	420063..420482	-	139	86607906	nifX	CYB_0409	-	nitrogenase cofactor biosynthesis protein NifX
404	 64.05	+1	420564..421901	-	445	86607907	nifN	CYB_0410	-	nitrogenase molybdenum-iron cofactor biosynthesis protein NifN
405	 61.65	0	421901..423295	-	464	86607908	nifE	CYB_0411	-	nitrogenase MoFe cofactor biosynthesis protein NifE
406	 59.17	0	423286..423645	-	119	86607909	-	CYB_0412	-	putative molybdenum-dependent nitrogenase
407	 53.33	-1	423649..423873	-	74	86607910	-	CYB_0413	-	hypothetical protein
408	 58.97	0	423916..424461	-	181	86607911	dpsA	CYB_0414	-	nutrient-stress induced DNA binding protein
409	 61.21	0	424516..424845	-	109	86607912	-	CYB_0415	-	hypothetical protein
410	 56.91	0	425332..425454	-	40	86607913	-	CYB_0416	-	hypothetical protein
411	 61.66	0	425583..427019	+	478	86607914	nifB	CYB_0417	-	nitrogenase cofactor biosynthesis protein NifB
412	 57.14	0	427045..427338	+	97	86607915	-	CYB_0418	-	ferredoxin, 4Fe-4S
413	 63.48	+1	427382..428572	+	396	86607916	nifS	CYB_0419	-	cysteine desulfurase
414	 60.49	0	428629..429567	+	312	86607917	nifU	CYB_0420	-	Fe-S cluster assembly protein NifU
415	 57.68	0	429845..430723	+	292	86607918	nifH	CYB_0421	-	nitrogenase iron protein
416	 57.58	0	430819..432282	+	487	86607919	nifD	CYB_0422	-	nitrogenase molybdenum-iron protein alpha chain
417	 58.72	0	432348..433883	+	511	86607920	nifK	CYB_0423	-	nitrogenase molybdenum-iron protein beta chain
418	 62.96	+1	434137..435324	+	395	86607921	aksA	CYB_0424	-	trans-homoaconitate synthase
419	 56.00	0	435314..435463	+	49	86607922	-	CYB_0425	-	hypothetical protein
420	 56.82	0	435460..435723	+	87	86607923	nifZ	CYB_0426	-	NifZ protein
421	 53.73	-1	435720..435920	+	66	86607924	-	CYB_0427	-	NifT/FixU family protein
422	 58.78	0	436073..437302	+	409	86607925	-	CYB_0428	-	major facilitator transporter
423	 62.22	0	437528..439684	-	718	86607926	-	CYB_0430	-	TPR repeat-containing protein
424	 60.54	0	439914..442607	+	897	86607927	-	CYB_0431	-	putative phycobilisome 120 kDa linker polypeptide, core
425	 59.98	0	442670..443806	-	378	86607928	ruvB	CYB_0432	-	Holliday junction DNA helicase B
426	 58.03	0	443947..445011	-	354	86607929	psbA-3	CYB_0433	-	photosystem II protein D1
427	 63.56	+1	445110..445817	+	235	86607930	-	CYB_0434	-	glycoprotease family protein
428	 54.48	0	445854..446411	+	185	86607931	efp	CYB_0435	-	elongation factor P
429	 57.59	0	446481..446954	+	157	86607932	accB	CYB_0436	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
430	 60.75	0	447349..448278	+	309	86607933	-	CYB_0437	-	Ser/Thr protein phosphatase family protein
431	 59.04	0	448355..449101	+	248	86607934	cysH	CYB_0438	-	phosophoadenylyl-sulfate reductase
432	 56.19	0	449105..449419	+	104	86607935	-	CYB_0439	-	antibiotic biosynthesis monooxygenase domain-containing protein
433	 54.88	0	449717..450658	-	313	86607936	-	CYB_0441	-	phosphoribulokinase
434	 56.64	0	450944..451711	+	255	86607937	-	CYB_0442	-	pspA/IM30 family protein
435	 58.49	0	451961..452425	+	154	86607938	-	CYB_0443	-	pentapeptide repeat-containing protein
436	 62.80	+1	452438..453265	-	275	86607939	cysQ	CYB_0444	-	3'(2'),5'-bisphosphate nucleotidase
437	 64.57	+1	453281..454042	-	253	86607940	hisF	CYB_0445	-	imidazole glycerol phosphate synthase subunit HisF
438	 63.59	+1	454104..455207	-	367	86607941	-	CYB_0446	-	hypothetical protein
439	 60.14	0	455204..455479	-	91	86607942	-	CYB_0447	-	hypothetical protein
440	 57.08	0	455532..456011	-	159	86607943	rpsP	CYB_0448	-	ribosomal protein S16
441	 57.05	0	456261..456707	+	148	86607944	-	CYB_0449	-	hypothetical protein
442	 61.11	0	456830..457225	-	131	86607945	-	CYB_0450	-	hypothetical protein
443	 59.19	0	457349..458311	+	320	86607946	sds	CYB_0451	-	solanesyl diphosphate synthase
444	 57.46	0	458340..459143	-	267	86607947	lepB	CYB_0452	-	signal peptidase I
445	 55.18	0	459188..459544	+	118	86607948	-	CYB_0453	-	hypothetical protein
446	 58.45	0	459576..460622	-	348	86607949	-	CYB_0454	-	general secretory pathway protein, putative
447	 62.22	0	460791..461510	+	239	86607950	pdxJ	CYB_0455	-	pyridoxal phosphate biosynthetic protein PdxJ
448	 61.30	0	461525..462157	+	210	86607951	-	CYB_0456	-	hypothetical protein
449	 61.63	0	462170..463003	+	277	86607952	-	CYB_0457	-	biotin--acetyl-CoA-carboxylase ligase
450	 62.32	0	463030..463950	+	306	86607953	-	CYB_0458	-	M23B family peptidase
451	 64.20	+1	464348..465361	-	337	86607954	-	CYB_0460	-	heptosyltransferase family protein
452	 64.08	+1	465556..466713	+	385	86607955	-	CYB_0461	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
453	 56.92	0	466819..468018	+	399	86607956	-	CYB_0462	-	hypothetical protein
454	 51.77	-1	468123..469082	-	319	86607957	-	CYB_0463	-	patatin family phospholipase
455	 59.78	0	469147..469785	-	212	86607958	-	CYB_0464	-	phosphoglycerate mutase family protein
456	 60.37	0	469831..470799	-	322	86607959	ppnK	CYB_0465	-	inorganic polyphosphate/ATP-NAD kinase
457	 59.88	0	471169..473409	+	746	86607960	-	CYB_0466	-	protein kinase
458	 57.26	0	473993..474109	-	38	86607961	-	CYB_0467	-	hypothetical protein
459	 49.95	-2	474361..476334	-	657	86607962	-	CYB_0468	-	TPR domain-containing protein
460	 52.08	-1	476536..478557	-	673	86607963	-	CYB_0469	-	FkbM family methyltransferase
461	 54.01	-1	478587..480641	-	684	86607964	-	CYB_0470	-	FkbM family methyltransferase
462	 59.03	0	480813..480956	+	47	86607965	-	CYB_0471	-	hypothetical protein
463	 56.85	0	481589..482800	+	403	86607966	-	CYB_0472	-	ISSoc1, transposase
464	 50.44	-1	482827..483726	+	299	86607967	-	CYB_0473	-	2OG-Fe(II) oxygenase family oxidoreductase
465	 46.19	-2	483699..484709	+	336	86607968	-	CYB_0474	-	hypothetical protein
466	 52.33	-1	484805..485320	-	171	86607969	-	CYB_0475	-	general secretion pathway protein G, putative
467	 48.27	-2	485683..489318	+	1211	86607970	-	CYB_0476	-	FkbM family methyltransferase
468	 48.15	-2	489323..489457	+	44	86607971	-	CYB_0477	-	hypothetical protein
469	 57.23	0	489533..490051	-	172	86607972	-	CYB_0478	-	purine phosphoribosyltransferase, putative
470	 57.65	0	490117..491037	-	306	86607973	ilvE	CYB_0479	-	branched-chain amino acid aminotransferase
471	 50.19	-2	491706..491966	+	86	86607974	-	CYB_0480	-	peptidase propeptide/YPEB domain-containing protein
472	 58.42	0	492232..493674	+	480	86607975	-	CYB_0481	-	HlyC/CorC (HCC) family transporter
473	 59.92	0	493690..495231	-	513	86607976	-	CYB_0482	-	Orn/Lys/Arg decarboxylase
474	 57.50	0	495354..495920	+	188	86607977	-	CYB_0483	-	hypothetical protein
475	 55.33	0	496114..498204	-	696	86607978	-	CYB_0484	-	type IV pilus secretin PilQ, putative
476	 57.12	0	498467..499168	-	233	86607979	-	CYB_0485	-	hypothetical protein
477	 57.34	0	499168..499875	-	235	86607980	pilN	CYB_0486	-	type 4 fimbrial biogenesis protein PilN
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.