IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
315	 60.13	0	334259..336613	+	784	86607818	-	CYB_0320	-	monovalent cation:proton antiporter-2 (CPA2) family protein
316	 58.54	0	336591..336959	-	122	86607819	-	CYB_0319	-	hypothetical protein
317	 62.69	+1	337002..337604	-	200	86607820	-	CYB_0321	-	hypothetical protein
318	 57.44	0	337816..339744	-	642	86607821	gyrB	CYB_0322	-	DNA gyrase subunit B
319	 62.22	0	339946..340485	-	179	86607822	rimM	CYB_0323	-	16S rRNA-processing protein
320	 57.87	0	340498..341463	-	321	86607823	-	CYB_0324	-	HflC/HflK family protein
321	 54.25	-1	341670..342692	+	340	86607824	-	CYB_0325	-	FAD-dependent oxidoreductase
322	 54.22	-1	342764..343864	+	366	86607825	-	CYB_0326	-	polysaccharide deacetylase family protein
323	 61.68	0	344054..345457	+	467	86607826	leuC	CYB_0327	-	isopropylmalate isomerase large subunit
324	 55.19	0	345731..346924	-	397	86607827	-	CYB_0329	-	ISSoc1, transposase
325	 64.81	+1	346995..347858	-	287	86607828	-	CYB_0330	-	xanthine dehydrogenase accessory factor, putative
326	 62.76	+1	347947..349098	-	383	86607829	-	CYB_0331	-	carboxylesterase
327	 61.59	0	349223..350188	+	321	86607830	-	CYB_0332	-	LysR family transcriptional regulator
328	 61.58	0	350302..351342	+	346	86607831	-	CYB_0333	-	hypothetical protein
329	 61.83	0	351715..352995	-	426	86607832	-	CYB_0334	-	Rho termination factor domain-containing protein
330	 61.83	0	353347..354255	+	302	86607833	-	CYB_0335	-	hypothetical protein
331	 61.23	0	354383..355504	+	373	86607834	-	CYB_0336	-	heptosyltransferase family protein
332	 61.29	0	355765..356694	+	309	86607835	-	CYB_0337	-	integral membrane protein
333	 64.10	+1	356719..357846	-	375	86607836	-	CYB_0338	-	alcohol dehydrogenase, iron-containing
334	 61.63	0	358767..360056	-	429	86607837	-	CYB_0340	-	aminotransferase, classes I and II
335	 60.72	0	360079..361053	-	324	86607838	-	CYB_0341	-	hypothetical protein
336	 60.27	0	361401..362072	-	223	86607839	-	CYB_0342	-	hypothetical protein
337	 61.72	0	362120..362827	-	235	86607840	pyrF	CYB_0343	-	orotidine 5'-phosphate decarboxylase
338	 56.28	0	362824..363420	-	198	86607841	-	CYB_0344	-	hypothetical protein
339	 62.30	0	364017..364817	-	266	86607842	-	CYB_0345	-	hypothetical protein
340	 56.71	0	364814..365245	-	143	86607843	-	CYB_0346	-	hypothetical protein
341	 59.41	0	365638..366588	+	316	86607844	-	CYB_0347	-	GGDEF/FHA domain-containing protein
342	 55.13	0	366610..366999	-	129	86607845	gcvH	CYB_0348	-	glycine cleavage system protein H
343	 58.39	0	367081..367986	-	301	86607846	-	CYB_0349	-	alpha/beta fold family hydrolase
344	 63.19	+1	368129..369076	+	315	86607847	-	CYB_0350	-	NAD-dependent glycerol-3-phosphate dehydrogenase family protein
345	 45.37	-2	369161..369268	-	35	86607848	-	CYB_0351	-	hypothetical protein
346	 55.46	0	369353..369718	+	121	86607849	-	CYB_0352	-	response regulator
347	 62.04	0	369859..371220	+	453	86607850	-	CYB_0353	-	ISSoc9, transposase
348	 60.11	0	371273..371455	-	60	86607851	-	CYB_0354	-	hypothetical protein
349	 55.07	0	371550..371756	+	68	86607852	-	CYB_0355	-	hypothetical protein
350	 52.19	-1	371797..372024	+	75	86607853	-	CYB_0356	-	hypothetical protein
351	 59.26	0	372178..373257	-	359	86607854	fba	CYB_0357	-	fructose-1,6-bisphosphate aldolase
352	 61.95	0	373633..374226	+	197	86607855	-	CYB_0358	-	hypothetical protein
353	 61.57	0	374262..375125	-	287	86607856	murI	CYB_0359	-	glutamate racemase
354	 62.62	+1	375308..377185	-	625	86607857	-	CYB_0360	-	N-acetylmuramoyl-L-alanine amidase
355	 54.51	0	377266..378450	+	394	86607858	-	CYB_0361	-	hypothetical protein
356	 59.41	0	378804..379409	+	201	86607859	cbiT	CYB_0362	-	precorrin-6B methylase
357	 57.08	0	379607..379825	+	72	86607860	-	CYB_0363	-	hypothetical protein
358	 55.60	0	380443..381219	-	258	86607861	ubiE	CYB_0364	-	ubiquinone/menaquinone biosynthesis methyltransferase
359	 65.62	+1	381323..381418	+	31	86607862	-	CYB_0365	-	hypothetical protein
360	 69.01	+2	381676..381846	+	56	86607863	-	CYB_0366	-	hypothetical protein
361	 61.29	0	382541..383098	+	185	86607864	cobU	CYB_0367	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
362	 56.25	0	383136..383615	+	159	86607865	-	CYB_0368	-	hypothetical protein
363	 61.14	0	383612..384154	+	180	86607866	-	CYB_0370	-	hypothetical protein
364	 57.68	0	383936..384202	-	88	86607867	-	CYB_0369	-	hypothetical protein
365	 58.22	0	384573..385637	-	354	86607868	psbA-2	CYB_0371	-	photosystem II protein D1
366	 60.38	0	385745..388288	-	847	86607869	-	CYB_0372	-	hypothetical protein
367	 61.12	0	388293..389735	-	480	86607870	-	CYB_0373	-	hypothetical protein
368	 60.35	0	389844..390128	-	94	86607871	-	CYB_0374	-	hypothetical protein
369	 64.87	+1	390215..390883	+	222	86607872	-	CYB_0375	-	molybdopterin-guanine dinucleotide biosynthesis protein A
370	 60.99	0	390961..393057	+	698	86607873	-	CYB_0376	-	hypothetical protein
371	 58.11	0	393663..394001	+	112	86607874	-	CYB_0377	-	hypothetical protein
372	 57.02	0	394086..394427	+	113	86607875	-	CYB_0378	-	histidine triad family protein
373	 57.91	0	394512..395162	+	216	86607876	cobH-2	CYB_0379	-	precorrin-8X methylmutase
374	 58.17	0	395663..396133	+	156	86607877	-	CYB_0380	-	hypothetical protein
375	 60.95	0	396252..398000	-	582	86607878	-	CYB_0381	-	putative diflavin flavoprotein
376	 63.10	+1	398116..399882	-	588	86607879	-	CYB_0382	-	GTP-binding protein
377	 53.54	-1	399966..400064	+	32	86607880	-	CYB_0383	-	hypothetical protein
378	 52.94	-1	400143..400295	-	50	86607881	-	CYB_0384	-	hypothetical protein
379	 43.29	-2	400347..400778	-	143	86607882	-	CYB_0385	-	hypothetical protein
380	 47.73	-2	400775..401392	-	205	86607883	-	CYB_0386	-	hypothetical protein
381	 51.32	-1	401389..402072	-	227	86607884	-	CYB_0387	-	hypothetical protein
382	 58.20	0	402139..403095	-	318	86607885	-	CYB_0388	-	carbohydrate ABC transporter permease
383	 61.71	0	403102..404151	-	349	86607886	-	CYB_0389	-	carbohydrate ABC transporter permease
384	 61.55	0	404141..405703	-	520	86607887	-	CYB_0390	-	carbohydrate ABC transporter ATP-binding protein
385	 57.53	0	405675..406703	-	342	86607888	-	CYB_0391	-	Bmp family membrane protein
386	 63.14	+1	407105..408379	+	424	86607889	codA	CYB_0393	-	cytosine deaminase
387	 59.91	0	408376..408834	-	152	86607890	-	CYB_0392	-	hypothetical protein
388	 61.24	0	408866..409492	-	208	86607891	-	CYB_0394	-	5-formyltetrahydrofolate cyclo-ligase family protein
389	 61.08	0	409537..410001	-	154	86607892	-	CYB_0395	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
390	 57.71	0	410061..410741	-	226	86607893	-	CYB_0396	-	hypothetical protein
391	 65.45	+1	410818..412713	+	631	86607894	cbiG/cobJ	CYB_0397	-	cbiG protein/precorrin-3B C17-methyltransferase
392	 62.14	0	412730..414517	-	595	86607895	modB	CYB_0398	-	molybdate ABC transporter, permease protein
393	 57.68	0	414555..415322	-	255	86607896	modA	CYB_0399	-	molybdate ABC transporter, periplasmic molybdate-binding protein
394	 46.85	-2	415426..415536	-	36	86607897	-	CYB_0400	-	hypothetical protein
395	 45.24	-2	415575..415784	+	69	86607898	-	CYB_0401	-	molybdenum-pterin binding domain-containing protein
396	 55.29	0	415813..417465	-	550	86607899	-	CYB_0402	-	transcriptional regulator PatB
397	 52.33	-1	417808..418065	-	85	86607900	-	CYB_0403	-	hypothetical protein
398	 49.47	-2	418165..418542	-	125	86607901	-	CYB_0404	-	FeoA domain-containing protein
399	 49.00	-2	418571..418870	-	99	86607902	-	CYB_0405	-	ferredoxin, 2Fe-2S
400	 55.46	0	418913..419278	-	121	86607903	nifW	CYB_0406	-	nitrogenase stabilizing/protective protein nifW
401	 56.82	0	419275..419538	-	87	86607904	-	CYB_0407	-	hypothetical protein
402	 59.65	0	419605..420060	-	151	86607905	-	CYB_0408	-	hypothetical protein
403	 60.24	0	420063..420482	-	139	86607906	nifX	CYB_0409	-	nitrogenase cofactor biosynthesis protein NifX
404	 64.05	+1	420564..421901	-	445	86607907	nifN	CYB_0410	-	nitrogenase molybdenum-iron cofactor biosynthesis protein NifN
405	 61.65	0	421901..423295	-	464	86607908	nifE	CYB_0411	-	nitrogenase MoFe cofactor biosynthesis protein NifE
406	 59.17	0	423286..423645	-	119	86607909	-	CYB_0412	-	putative molybdenum-dependent nitrogenase
407	 53.33	-1	423649..423873	-	74	86607910	-	CYB_0413	-	hypothetical protein
408	 58.97	0	423916..424461	-	181	86607911	dpsA	CYB_0414	-	nutrient-stress induced DNA binding protein
409	 61.21	0	424516..424845	-	109	86607912	-	CYB_0415	-	hypothetical protein
410	 56.91	0	425332..425454	-	40	86607913	-	CYB_0416	-	hypothetical protein
411	 61.66	0	425583..427019	+	478	86607914	nifB	CYB_0417	-	nitrogenase cofactor biosynthesis protein NifB
412	 57.14	0	427045..427338	+	97	86607915	-	CYB_0418	-	ferredoxin, 4Fe-4S
413	 63.48	+1	427382..428572	+	396	86607916	nifS	CYB_0419	-	cysteine desulfurase
414	 60.49	0	428629..429567	+	312	86607917	nifU	CYB_0420	-	Fe-S cluster assembly protein NifU
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.