IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
287	 50.67	-1	304330..304479	-	49	86607790	-	CYB_0291	-	hypothetical protein
288	 61.88	0	304468..305910	+	480	86607791	murD	CYB_0292	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
289	 60.81	0	305819..306979	+	386	86607792	-	CYB_0293	-	putative cell division protein FtsW
290	 50.41	-1	306991..307113	+	40	86607793	-	CYB_0294	-	hypothetical protein
291	 51.60	-1	307128..307346	-	72	86607794	-	CYB_0295	-	hypothetical protein
292	 58.99	0	307437..308048	-	203	86607795	-	CYB_0296	-	hypothetical protein
293	 52.22	-1	308380..308559	+	59	86607796	-	CYB_0297	-	hypothetical protein
294	 59.04	0	308751..310337	-	528	86607797	-	CYB_0298	-	NAD(P)H-quinone oxidoreductase subunit 4
295	 58.88	0	310591..311592	-	333	86607798	-	CYB_0299	-	dehydrogenase E1 component, alpha subunit
296	 57.07	0	311919..312731	+	270	86607799	cdsA	CYB_0300	-	phosphatidate cytidylyltransferase
297	 59.80	0	313555..316293	+	912	86607800	valS	CYB_0301	-	valyl-tRNA synthetase
298	 56.79	0	316540..316863	+	107	86607801	-	CYB_0302	-	putative RNA-binding protein
299	 49.74	-2	316903..317091	-	62	86607802	-	CYB_0303	-	hypothetical protein
300	 61.84	0	317061..319277	-	738	86607803	-	CYB_0304	-	CobN/magnesium chelatase domain-containing protein
301	 56.03	0	319265..319612	-	115	86607804	-	CYB_0305	-	hypothetical protein
302	 59.83	0	319737..321023	-	428	86607805	-	CYB_0306	-	putative lipoprotein
303	 60.61	0	321184..321381	-	65	86607806	-	CYB_0307	-	hypothetical protein
304	 60.08	0	321228..321743	-	171	86607807	-	CYB_0308	-	glutamine amidotransferase, class I
305	 60.85	0	321911..322975	-	354	86607808	-	CYB_0309	-	carbohydrate ABC transporter permease
306	 61.72	0	323019..324797	-	592	86607809	-	CYB_0310	-	dolichyl-phosphate-mannose-protein mannosyltransferase
307	 56.70	0	325156..326931	-	591	86607810	-	CYB_0311	-	hypothetical protein
308	 60.25	0	327028..328524	-	498	86607811	ftsY	CYB_0312	-	signal recognition particle-docking protein FtsY
309	 60.02	0	328628..329455	-	275	86607812	-	CYB_0313	-	hypothetical protein
310	 58.97	0	329524..329991	-	155	86607813	-	CYB_0314	-	hypothetical protein
311	 62.05	0	330804..331757	-	317	86607814	-	CYB_0315	-	M48B family peptidase
312	 59.18	0	331930..332664	+	244	86607815	minC	CYB_0316	-	septum formation inhibitor
313	 59.11	0	332661..333467	+	268	86607816	minD	CYB_0317	-	septum site-determining protein MinD
314	 57.10	0	333559..333861	+	100	86607817	minE	CYB_0318	-	cell division topological specificity factor MinE
315	 60.13	0	334259..336613	+	784	86607818	-	CYB_0320	-	monovalent cation:proton antiporter-2 (CPA2) family protein
316	 58.54	0	336591..336959	-	122	86607819	-	CYB_0319	-	hypothetical protein
317	 62.69	+1	337002..337604	-	200	86607820	-	CYB_0321	-	hypothetical protein
318	 57.44	0	337816..339744	-	642	86607821	gyrB	CYB_0322	-	DNA gyrase subunit B
319	 62.22	0	339946..340485	-	179	86607822	rimM	CYB_0323	-	16S rRNA-processing protein
320	 57.87	0	340498..341463	-	321	86607823	-	CYB_0324	-	HflC/HflK family protein
321	 54.25	-1	341670..342692	+	340	86607824	-	CYB_0325	-	FAD-dependent oxidoreductase
322	 54.22	-1	342764..343864	+	366	86607825	-	CYB_0326	-	polysaccharide deacetylase family protein
323	 61.68	0	344054..345457	+	467	86607826	leuC	CYB_0327	-	isopropylmalate isomerase large subunit
324	 55.19	0	345731..346924	-	397	86607827	-	CYB_0329	-	ISSoc1, transposase
325	 64.81	+1	346995..347858	-	287	86607828	-	CYB_0330	-	xanthine dehydrogenase accessory factor, putative
326	 62.76	+1	347947..349098	-	383	86607829	-	CYB_0331	-	carboxylesterase
327	 61.59	0	349223..350188	+	321	86607830	-	CYB_0332	-	LysR family transcriptional regulator
328	 61.58	0	350302..351342	+	346	86607831	-	CYB_0333	-	hypothetical protein
329	 61.83	0	351715..352995	-	426	86607832	-	CYB_0334	-	Rho termination factor domain-containing protein
330	 61.83	0	353347..354255	+	302	86607833	-	CYB_0335	-	hypothetical protein
331	 61.23	0	354383..355504	+	373	86607834	-	CYB_0336	-	heptosyltransferase family protein
332	 61.29	0	355765..356694	+	309	86607835	-	CYB_0337	-	integral membrane protein
333	 64.10	+1	356719..357846	-	375	86607836	-	CYB_0338	-	alcohol dehydrogenase, iron-containing
334	 61.63	0	358767..360056	-	429	86607837	-	CYB_0340	-	aminotransferase, classes I and II
335	 60.72	0	360079..361053	-	324	86607838	-	CYB_0341	-	hypothetical protein
336	 60.27	0	361401..362072	-	223	86607839	-	CYB_0342	-	hypothetical protein
337	 61.72	0	362120..362827	-	235	86607840	pyrF	CYB_0343	-	orotidine 5'-phosphate decarboxylase
338	 56.28	0	362824..363420	-	198	86607841	-	CYB_0344	-	hypothetical protein
339	 62.30	0	364017..364817	-	266	86607842	-	CYB_0345	-	hypothetical protein
340	 56.71	0	364814..365245	-	143	86607843	-	CYB_0346	-	hypothetical protein
341	 59.41	0	365638..366588	+	316	86607844	-	CYB_0347	-	GGDEF/FHA domain-containing protein
342	 55.13	0	366610..366999	-	129	86607845	gcvH	CYB_0348	-	glycine cleavage system protein H
343	 58.39	0	367081..367986	-	301	86607846	-	CYB_0349	-	alpha/beta fold family hydrolase
344	 63.19	+1	368129..369076	+	315	86607847	-	CYB_0350	-	NAD-dependent glycerol-3-phosphate dehydrogenase family protein
345	 45.37	-2	369161..369268	-	35	86607848	-	CYB_0351	-	hypothetical protein
346	 55.46	0	369353..369718	+	121	86607849	-	CYB_0352	-	response regulator
347	 62.04	0	369859..371220	+	453	86607850	-	CYB_0353	-	ISSoc9, transposase
348	 60.11	0	371273..371455	-	60	86607851	-	CYB_0354	-	hypothetical protein
349	 55.07	0	371550..371756	+	68	86607852	-	CYB_0355	-	hypothetical protein
350	 52.19	-1	371797..372024	+	75	86607853	-	CYB_0356	-	hypothetical protein
351	 59.26	0	372178..373257	-	359	86607854	fba	CYB_0357	-	fructose-1,6-bisphosphate aldolase
352	 61.95	0	373633..374226	+	197	86607855	-	CYB_0358	-	hypothetical protein
353	 61.57	0	374262..375125	-	287	86607856	murI	CYB_0359	-	glutamate racemase
354	 62.62	+1	375308..377185	-	625	86607857	-	CYB_0360	-	N-acetylmuramoyl-L-alanine amidase
355	 54.51	0	377266..378450	+	394	86607858	-	CYB_0361	-	hypothetical protein
356	 59.41	0	378804..379409	+	201	86607859	cbiT	CYB_0362	-	precorrin-6B methylase
357	 57.08	0	379607..379825	+	72	86607860	-	CYB_0363	-	hypothetical protein
358	 55.60	0	380443..381219	-	258	86607861	ubiE	CYB_0364	-	ubiquinone/menaquinone biosynthesis methyltransferase
359	 65.62	+1	381323..381418	+	31	86607862	-	CYB_0365	-	hypothetical protein
360	 69.01	+2	381676..381846	+	56	86607863	-	CYB_0366	-	hypothetical protein
361	 61.29	0	382541..383098	+	185	86607864	cobU	CYB_0367	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
362	 56.25	0	383136..383615	+	159	86607865	-	CYB_0368	-	hypothetical protein
363	 61.14	0	383612..384154	+	180	86607866	-	CYB_0370	-	hypothetical protein
364	 57.68	0	383936..384202	-	88	86607867	-	CYB_0369	-	hypothetical protein
365	 58.22	0	384573..385637	-	354	86607868	psbA-2	CYB_0371	-	photosystem II protein D1
366	 60.38	0	385745..388288	-	847	86607869	-	CYB_0372	-	hypothetical protein
367	 61.12	0	388293..389735	-	480	86607870	-	CYB_0373	-	hypothetical protein
368	 60.35	0	389844..390128	-	94	86607871	-	CYB_0374	-	hypothetical protein
369	 64.87	+1	390215..390883	+	222	86607872	-	CYB_0375	-	molybdopterin-guanine dinucleotide biosynthesis protein A
370	 60.99	0	390961..393057	+	698	86607873	-	CYB_0376	-	hypothetical protein
371	 58.11	0	393663..394001	+	112	86607874	-	CYB_0377	-	hypothetical protein
372	 57.02	0	394086..394427	+	113	86607875	-	CYB_0378	-	histidine triad family protein
373	 57.91	0	394512..395162	+	216	86607876	cobH-2	CYB_0379	-	precorrin-8X methylmutase
374	 58.17	0	395663..396133	+	156	86607877	-	CYB_0380	-	hypothetical protein
375	 60.95	0	396252..398000	-	582	86607878	-	CYB_0381	-	putative diflavin flavoprotein
376	 63.10	+1	398116..399882	-	588	86607879	-	CYB_0382	-	GTP-binding protein
377	 53.54	-1	399966..400064	+	32	86607880	-	CYB_0383	-	hypothetical protein
378	 52.94	-1	400143..400295	-	50	86607881	-	CYB_0384	-	hypothetical protein
379	 43.29	-2	400347..400778	-	143	86607882	-	CYB_0385	-	hypothetical protein
380	 47.73	-2	400775..401392	-	205	86607883	-	CYB_0386	-	hypothetical protein
381	 51.32	-1	401389..402072	-	227	86607884	-	CYB_0387	-	hypothetical protein
382	 58.20	0	402139..403095	-	318	86607885	-	CYB_0388	-	carbohydrate ABC transporter permease
383	 61.71	0	403102..404151	-	349	86607886	-	CYB_0389	-	carbohydrate ABC transporter permease
384	 61.55	0	404141..405703	-	520	86607887	-	CYB_0390	-	carbohydrate ABC transporter ATP-binding protein
385	 57.53	0	405675..406703	-	342	86607888	-	CYB_0391	-	Bmp family membrane protein
386	 63.14	+1	407105..408379	+	424	86607889	codA	CYB_0393	-	cytosine deaminase
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.