IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2720	 54.55	0	2897084..2897413	-	109	86610222	rpsT	CYB_2798	-	30S ribosomal protein S20
2721	 61.03	0	2897501..2898865	+	454	86610223	-	CYB_2800	-	FG-GAP repeat- ASPIC/UnbV domain-containing protein
2722	 59.30	0	2898862..2899839	-	325	86610224	moaA	CYB_2799	-	molybdenum cofactor biosynthesis protein MoaA
2723	 60.69	0	2900036..2901943	-	635	86610225	-	CYB_2801	-	monovalent cation:proton antiporter-2 (CPA2) family protein
2724	 59.16	0	2902368..2902820	+	150	86610226	-	CYB_2802	-	hypothetical protein
2725	 57.45	0	2902854..2902994	-	46	86610227	-	CYB_2803	-	hypothetical protein
2726	 57.40	0	2903069..2904493	-	474	86610228	glnA-2	CYB_2804	-	glutamine synthetase, type I
2727	 56.79	0	2904742..2904903	+	53	86610229	-	CYB_2805	-	hypothetical protein
2728	 58.98	0	2904959..2906389	+	476	86610230	trxB	CYB_2806	-	thioredoxin-disulfide reductase
2729	 63.72	+1	2906476..2908782	-	768	86610231	purL	CYB_2807	-	phosphoribosylformylglycinamidine synthase II
2730	 62.25	0	2908804..2911317	-	837	86610232	recG	CYB_2808	-	ATP-dependent DNA helicase RecG
2731	 59.14	0	2911524..2911616	-	30	86610233	psaM	CYB_2809	-	photosystem I reaction center subunit XII
2732	 61.29	0	2912030..2913313	+	427	86610234	glyA	CYB_2810	-	serine hydroxymethyltransferase
2733	 61.40	0	2913347..2914447	+	366	86610235	-	CYB_2811	-	glycosyl transferase, group 4 family protein
2734	 60.09	0	2914444..2915112	+	222	86610236	-	CYB_2812	-	hypothetical protein
2735	 61.93	0	2915118..2915645	-	175	86610237	apt	CYB_2813	-	adenine phosphoribosyltransferase
2736	 58.68	0	2915856..2916293	+	145	86610238	-	CYB_2814	-	hypothetical protein
2737	 63.59	+1	2916339..2918288	-	649	86610239	-	CYB_2815	-	NHL repeat-containing protein
2738	 61.62	0	2918611..2919879	-	422	86610240	-	CYB_2816	-	hypothetical protein
2739	 64.25	+1	2920310..2920888	-	192	86610241	-	CYB_2817	-	DNA-3-methyladenine glycosylase
2740	 57.61	0	2920915..2921190	-	91	86610242	-	CYB_2818	-	MoaD family protein
2741	 62.84	+1	2921227..2921748	-	173	86610243	-	CYB_2819	-	fasciclin domain-containing protein
2742	 61.00	0	2921853..2923193	-	446	86610244	thrC-2	CYB_2820	-	threonine synthase
2743	 58.33	0	2923342..2923497	+	51	86610245	-	CYB_2821	-	hypothetical protein
2744	 62.63	+1	2923704..2925635	+	643	86610246	gidA	CYB_2823	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2745	 65.48	+1	2925599..2926693	-	364	86610247	gcp	CYB_2822	-	O-sialoglycoprotein endopeptidase
2746	 58.06	0	2926899..2927444	+	181	86610248	psaF	CYB_2824	-	photosystem I reaction center subunit III
2747	 45.83	-2	2927489..2927608	+	39	86610249	psaJ	CYB_2825	-	photosystem I reaction center subunit IX
2748	 58.54	0	2927710..2928189	+	159	86610250	psaL-2	CYB_2826	-	photosystem I reaction center protein subunit XI
2749	 52.08	-1	2928199..2928438	+	79	86610251	-	CYB_2827	-	hypothetical protein
2750	 61.34	0	2928604..2929035	+	143	86610252	-	CYB_2828	-	hypothetical protein
2751	 58.66	0	2929069..2930205	+	378	86610253	-	CYB_2829	-	RNA methyltransferase
2752	 58.14	0	2930228..2930485	+	85	86610254	-	CYB_2830	-	hypothetical protein
2753	 56.60	0	2930485..2930802	+	105	86610255	-	CYB_2831	-	ferredoxin, 2Fe-2S
2754	 59.90	0	2931331..2931537	+	68	86610256	-	CYB_2832	-	hypothetical protein
2755	 63.09	+1	2931711..2932577	+	288	86610257	thiD	CYB_2833	-	phosphomethylpyrimidine kinase
2756	 56.97	0	2932604..2933170	+	188	86610258	-	CYB_2834	-	hypothetical protein
2757	 57.52	0	2933474..2934709	+	411	86610259	-	CYB_2835	-	ISSoc1, transposase
2758	 59.21	0	2934711..2935394	-	227	86610260	-	CYB_2836	-	phospholipase/carboxylesterase family protein
2759	 60.06	0	2935446..2936459	-	337	86610261	hemF	CYB_2837	-	coproporphyrinogen III oxidase
2760	 55.56	0	2936606..2936848	-	80	86610262	-	CYB_2838	-	hypothetical protein
2761	 55.56	0	2937063..2937359	+	98	86610263	-	CYB_2839	-	hypothetical protein
2762	 57.14	0	2938001..2938147	-	48	86610264	-	CYB_2840	-	hypothetical protein
2763	 60.35	0	2938414..2938983	+	189	86610265	-	CYB_2841	-	CpeS-like protein
2764	 55.21	0	2939019..2939114	+	31	90296805	-	CYB_2842	-	hydrogenase accessory protein HypB, interruption-N
2765	 58.29	0	2939367..2939987	+	206	90296806	-	CYB_2844	-	hydrogenase accessory protein HypB, interruption-C
2766	 64.97	+1	2940111..2941997	+	628	86610266	-	CYB_2845	-	AAA family ATPase
2767	 61.02	0	2942059..2943564	-	501	86610267	glcD	CYB_2846	-	glycolate oxidase, subunit GlcD
2768	 61.96	0	2943652..2944884	+	410	86610268	-	CYB_2847	-	hypothetical protein
2769	 59.70	0	2945013..2945213	+	66	86610269	rpmI	CYB_2848	-	50S ribosomal protein L35
2770	 59.66	0	2945347..2945703	+	118	86610270	rplT	CYB_2849	-	50S ribosomal protein L20
2771	 62.37	0	2945585..2946514	+	309	86610271	-	CYB_2850	-	amino acid transporter, periplasmic amino acid-binding protein
2772	 61.48	0	2946860..2948593	-	577	86610272	purH	CYB_2851	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2773	 58.85	0	2948746..2949525	-	259	86610273	cysE	CYB_2852	-	serine O-acetyltransferase
2774	 60.74	0	2949662..2951179	-	505	86610274	-	CYB_2853	-	hypothetical protein
2775	 61.79	0	2951360..2952262	-	300	86610275	ubiA	CYB_2854	-	prenyltransferase
2776	 57.80	0	2952637..2953380	+	247	86610276	-	CYB_2856	-	DNA-binding response regulator
2777	 64.43	+1	2953377..2954759	-	460	86610277	-	CYB_2855	-	polyA polymerase family protein
2778	 61.55	0	2954905..2955939	-	344	86610278	hemH	CYB_2857	-	ferrochelatase
2779	 59.83	0	2956212..2956679	-	155	86610279	-	CYB_2858	-	hypothetical protein
2780	 58.74	0	2956992..2957483	+	163	86610280	-	CYB_2859	-	hypothetical protein
2781	 59.42	0	2957576..2958127	+	183	86610281	moaC	CYB_2860	-	molybdenum cofactor biosynthesis protein C
2782	 60.02	0	2958121..2960031	+	636	86610282	-	CYB_2861	-	hypothetical protein
2783	 54.53	0	2960025..2961029	+	334	86610283	-	CYB_2862	-	hypothetical protein
2784	 62.03	0	2961046..2961606	+	186	86610284	-	CYB_2863	-	hexapaptide repeat-containing transferase
2785	 60.01	0	2961628..2963085	-	485	86610285	-	CYB_2864	-	hypothetical protein
2786	 60.69	0	2963262..2965085	-	607	86610286	-	CYB_2865	-	hypothetical protein
2787	 56.32	0	2965281..2965541	-	86	86610287	-	CYB_2866	-	hypothetical protein
2788	 61.11	0	2965640..2967259	-	539	86610288	-	CYB_2867	-	S15 family X-Pro dipeptidyl-peptidase
2789	 49.36	-2	2967415..2967570	+	51	86610289	-	CYB_2868	-	hypothetical protein
2790	 53.76	-1	2967831..2968295	-	154	86610290	-	CYB_2869	-	cupin domain-containing protein
2791	 58.93	0	2968341..2969051	-	236	86610291	-	CYB_2870	-	isochorismatase family protein
2792	 55.35	0	2969371..2969529	+	52	86610292	-	CYB_2871	-	hypothetical protein
2793	 57.73	0	2969532..2970068	+	178	86610293	-	CYB_2872	-	acetyltransferase
2794	 58.08	0	2970147..2970437	+	96	86610294	phhB	CYB_2873	-	pterin-4-alpha-carbinolamine dehydratase
2795	 57.16	0	2970578..2971534	+	318	86610295	-	CYB_2874	-	NAD-dependent epimerase/dehydratase family protein
2796	 60.29	0	2971940..2973775	+	611	86610296	-	CYB_2875	-	NAD(P)H-quinone oxidoreductase subunit F
2797	 58.92	0	2973826..2975361	+	511	86610297	-	CYB_2876	-	NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein
2798	 54.61	0	2975420..2976730	+	436	86610298	-	CYB_2877	-	CO2 hydration protein
2799	 55.12	0	2976812..2977270	+	152	86610299	-	CYB_2878	-	fasciclin domain-containing protein
2800	 55.56	0	2977728..2977907	+	59	86610300	-	CYB_2879	-	hypothetical protein
2801	 62.86	+1	2978142..2979533	-	463	86610301	-	CYB_2880	-	putative peptidase TldD
2802	 61.83	0	2979666..2982314	-	882	86610302	leuS	CYB_2881	-	leucyl-tRNA synthetase
2803	 58.14	0	2982455..2983345	-	296	86610303	petH	CYB_2882	-	ferredoxin--NADP reductase
2804	 57.24	0	2983697..2984704	+	335	86610304	prk	CYB_2883	-	phosphoribulokinase
2805	 61.89	0	2984791..2985522	+	243	86610305	pgl	CYB_2885	-	6-phosphogluconolactonase
2806	 60.83	0	2985515..2985634	-	39	86610306	-	CYB_2884	-	hypothetical protein
2807	 58.26	0	2985674..2986387	-	237	86610307	-	CYB_2886	-	hypothetical protein
2808	 60.34	0	2986499..2987368	-	289	86610308	-	CYB_2887	-	TPR repeat-containing protein
2809	 58.73	0	2987533..2987910	-	125	86610309	rplS	CYB_2889	-	50S ribosomal protein L19
2810	 63.03	+1	2988077..2989450	+	457	86610310	-	CYB_2890	-	RND family efflux transporter MFP subunit
2811	 62.46	0	2989447..2990658	+	403	86610311	macB	CYB_2892	-	macrolide ABC transporter, permease protein
2812	 61.63	0	2990655..2992163	-	502	86610312	ubiD	CYB_2891	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2813	 58.05	0	2992182..2992970	-	262	86610313	-	CYB_2893	-	putative sn-glycerol-3-phosphate ABC transporter, permease protein
2814	 56.25	0	2993299..2993634	+	111	86610314	-	CYB_2894	-	hypothetical protein
2815	 61.50	0	2993670..2994269	+	199	86610315	recR	CYB_2895	-	recombination protein RecR
2816	 56.99	0	2994283..2994861	-	192	86610316	-	CYB_2896	-	hypothetical protein
2817	 57.92	0	2995100..2995648	+	182	86610317	frr	CYB_2897	-	ribosome recycling factor
2818	 63.40	+1	2995885..2998611	+	908	86610318	-	CYB_2898	-	polyA polymerase family protein
2819	 57.59	0	2998621..2999127	-	168	86610319	-	CYB_2899	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.