IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2685	 59.48	0	2858008..2859468	-	486	86610187	-	CYB_2760	-	putative bacteriochlorophyll delivery (BCD) family protein
2686	 59.15	0	2859638..2860702	+	354	86610188	-	CYB_2762	-	hypothetical protein
2687	 58.82	0	2861094..2861297	+	67	86610189	-	CYB_2763	-	hypothetical protein
2688	 60.53	0	2861533..2862999	+	488	86610190	-	CYB_2764	-	hypothetical protein
2689	 56.56	0	2863171..2865693	+	840	86610191	-	CYB_2765	-	endonuclease/exonuclease/phosphatase family protein
2690	 57.25	0	2865694..2865831	+	45	86610192	-	CYB_2766	-	hypothetical protein
2691	 61.97	0	2865971..2867077	-	368	86610193	cbiD	CYB_2767	-	cobalt-precorrin-6A synthase
2692	 57.63	0	2867277..2867630	+	117	86610194	-	CYB_2768	-	hypothetical protein
2693	 59.39	0	2867669..2868259	-	196	86610195	def	CYB_2769	-	peptide deformylase
2694	 53.65	-1	2868402..2868716	-	104	86610196	-	CYB_2770	-	hypothetical protein
2695	 60.86	0	2868720..2869046	-	108	86610197	-	CYB_2771	-	hypothetical protein
2696	 52.43	-1	2869046..2869312	-	88	86610198	-	CYB_2772	-	phycobilisome degradation protein nblA, putative
2697	 58.33	0	2869342..2869437	+	31	86610199	-	CYB_2773	-	hypothetical protein
2698	 54.37	-1	2869600..2869851	+	83	86610200	-	CYB_2774	-	putative RNA-binding protein
2699	 59.16	0	2869975..2871279	+	434	86610201	sbcD	CYB_2775	-	nuclease SbcCD, D subunit
2700	 50.41	-1	2871799..2872044	+	81	86610202	-	CYB_2776	-	hypothetical protein
2701	 57.50	0	2872503..2872742	+	79	86610203	-	CYB_2778	-	hypothetical protein
2702	 61.00	0	2872847..2874769	-	640	86610204	speA	CYB_2779	-	arginine decarboxylase
2703	 62.31	0	2875217..2876317	+	366	86610205	pstS-3	CYB_2780	-	phosphate ABC transporter, periplasmic phosphate-binding protein
2704	 61.60	0	2876608..2878500	+	630	86610206	dnaK-1	CYB_2781	-	molecular chaperone DnaK
2705	 57.08	0	2878709..2879668	+	319	86610207	-	CYB_2782	-	DnaJ family protein
2706	 61.25	0	2879809..2880639	-	276	86610208	-	CYB_2783	-	RNA methyltransferase
2707	 61.05	0	2880707..2881294	+	195	86610209	-	CYB_2784	-	putative lipoprotein
2708	 61.99	0	2881309..2882163	+	284	86610210	lpxC	CYB_2785	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2709	 59.88	0	2882377..2882877	+	166	86610211	fabZ	CYB_2786	-	(3R)-hydroxymyristoyl-ACP dehydratase
2710	 59.88	0	2883111..2884097	+	328	86610212	lpxA	CYB_2787	-	UDP-N-acetylglucosamine acyltransferase
2711	 63.36	+1	2884124..2885332	+	402	86610213	lpxB	CYB_2789	-	lipid-A-disaccharide synthase
2712	 56.48	0	2885329..2886801	-	490	86610214	-	CYB_2788	-	hypothetical protein
2713	 58.80	0	2887174..2888088	+	304	86610215	-	CYB_2791	-	sensor histidine kinase
2714	 58.33	0	2888078..2888569	-	163	86610216	-	CYB_2790	-	hypothetical protein
2715	 48.44	-2	2889313..2889729	+	138	86610217	-	CYB_2792	-	hypothetical protein
2716	 57.36	0	2889963..2890220	+	85	86610218	-	CYB_2793	-	hypothetical protein
2717	 60.42	0	2890402..2892402	-	666	162139626	tynA	CYB_2794	-	tyramine oxidase
2718	 56.78	0	2893312..2895972	+	886	86610220	-	CYB_2795	-	sensory box histidine kinase
2719	 57.12	0	2896427..2896981	+	184	86610221	-	CYB_2797	-	hypothetical protein
2720	 54.55	0	2897084..2897413	-	109	86610222	rpsT	CYB_2798	-	30S ribosomal protein S20
2721	 61.03	0	2897501..2898865	+	454	86610223	-	CYB_2800	-	FG-GAP repeat- ASPIC/UnbV domain-containing protein
2722	 59.30	0	2898862..2899839	-	325	86610224	moaA	CYB_2799	-	molybdenum cofactor biosynthesis protein MoaA
2723	 60.69	0	2900036..2901943	-	635	86610225	-	CYB_2801	-	monovalent cation:proton antiporter-2 (CPA2) family protein
2724	 59.16	0	2902368..2902820	+	150	86610226	-	CYB_2802	-	hypothetical protein
2725	 57.45	0	2902854..2902994	-	46	86610227	-	CYB_2803	-	hypothetical protein
2726	 57.40	0	2903069..2904493	-	474	86610228	glnA-2	CYB_2804	-	glutamine synthetase, type I
2727	 56.79	0	2904742..2904903	+	53	86610229	-	CYB_2805	-	hypothetical protein
2728	 58.98	0	2904959..2906389	+	476	86610230	trxB	CYB_2806	-	thioredoxin-disulfide reductase
2729	 63.72	+1	2906476..2908782	-	768	86610231	purL	CYB_2807	-	phosphoribosylformylglycinamidine synthase II
2730	 62.25	0	2908804..2911317	-	837	86610232	recG	CYB_2808	-	ATP-dependent DNA helicase RecG
2731	 59.14	0	2911524..2911616	-	30	86610233	psaM	CYB_2809	-	photosystem I reaction center subunit XII
2732	 61.29	0	2912030..2913313	+	427	86610234	glyA	CYB_2810	-	serine hydroxymethyltransferase
2733	 61.40	0	2913347..2914447	+	366	86610235	-	CYB_2811	-	glycosyl transferase, group 4 family protein
2734	 60.09	0	2914444..2915112	+	222	86610236	-	CYB_2812	-	hypothetical protein
2735	 61.93	0	2915118..2915645	-	175	86610237	apt	CYB_2813	-	adenine phosphoribosyltransferase
2736	 58.68	0	2915856..2916293	+	145	86610238	-	CYB_2814	-	hypothetical protein
2737	 63.59	+1	2916339..2918288	-	649	86610239	-	CYB_2815	-	NHL repeat-containing protein
2738	 61.62	0	2918611..2919879	-	422	86610240	-	CYB_2816	-	hypothetical protein
2739	 64.25	+1	2920310..2920888	-	192	86610241	-	CYB_2817	-	DNA-3-methyladenine glycosylase
2740	 57.61	0	2920915..2921190	-	91	86610242	-	CYB_2818	-	MoaD family protein
2741	 62.84	+1	2921227..2921748	-	173	86610243	-	CYB_2819	-	fasciclin domain-containing protein
2742	 61.00	0	2921853..2923193	-	446	86610244	thrC-2	CYB_2820	-	threonine synthase
2743	 58.33	0	2923342..2923497	+	51	86610245	-	CYB_2821	-	hypothetical protein
2744	 62.63	+1	2923704..2925635	+	643	86610246	gidA	CYB_2823	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2745	 65.48	+1	2925599..2926693	-	364	86610247	gcp	CYB_2822	-	O-sialoglycoprotein endopeptidase
2746	 58.06	0	2926899..2927444	+	181	86610248	psaF	CYB_2824	-	photosystem I reaction center subunit III
2747	 45.83	-2	2927489..2927608	+	39	86610249	psaJ	CYB_2825	-	photosystem I reaction center subunit IX
2748	 58.54	0	2927710..2928189	+	159	86610250	psaL-2	CYB_2826	-	photosystem I reaction center protein subunit XI
2749	 52.08	-1	2928199..2928438	+	79	86610251	-	CYB_2827	-	hypothetical protein
2750	 61.34	0	2928604..2929035	+	143	86610252	-	CYB_2828	-	hypothetical protein
2751	 58.66	0	2929069..2930205	+	378	86610253	-	CYB_2829	-	RNA methyltransferase
2752	 58.14	0	2930228..2930485	+	85	86610254	-	CYB_2830	-	hypothetical protein
2753	 56.60	0	2930485..2930802	+	105	86610255	-	CYB_2831	-	ferredoxin, 2Fe-2S
2754	 59.90	0	2931331..2931537	+	68	86610256	-	CYB_2832	-	hypothetical protein
2755	 63.09	+1	2931711..2932577	+	288	86610257	thiD	CYB_2833	-	phosphomethylpyrimidine kinase
2756	 56.97	0	2932604..2933170	+	188	86610258	-	CYB_2834	-	hypothetical protein
2757	 57.52	0	2933474..2934709	+	411	86610259	-	CYB_2835	-	ISSoc1, transposase
2758	 59.21	0	2934711..2935394	-	227	86610260	-	CYB_2836	-	phospholipase/carboxylesterase family protein
2759	 60.06	0	2935446..2936459	-	337	86610261	hemF	CYB_2837	-	coproporphyrinogen III oxidase
2760	 55.56	0	2936606..2936848	-	80	86610262	-	CYB_2838	-	hypothetical protein
2761	 55.56	0	2937063..2937359	+	98	86610263	-	CYB_2839	-	hypothetical protein
2762	 57.14	0	2938001..2938147	-	48	86610264	-	CYB_2840	-	hypothetical protein
2763	 60.35	0	2938414..2938983	+	189	86610265	-	CYB_2841	-	CpeS-like protein
2764	 55.21	0	2939019..2939114	+	31	90296805	-	CYB_2842	-	hydrogenase accessory protein HypB, interruption-N
2765	 58.29	0	2939367..2939987	+	206	90296806	-	CYB_2844	-	hydrogenase accessory protein HypB, interruption-C
2766	 64.97	+1	2940111..2941997	+	628	86610266	-	CYB_2845	-	AAA family ATPase
2767	 61.02	0	2942059..2943564	-	501	86610267	glcD	CYB_2846	-	glycolate oxidase, subunit GlcD
2768	 61.96	0	2943652..2944884	+	410	86610268	-	CYB_2847	-	hypothetical protein
2769	 59.70	0	2945013..2945213	+	66	86610269	rpmI	CYB_2848	-	50S ribosomal protein L35
2770	 59.66	0	2945347..2945703	+	118	86610270	rplT	CYB_2849	-	50S ribosomal protein L20
2771	 62.37	0	2945585..2946514	+	309	86610271	-	CYB_2850	-	amino acid transporter, periplasmic amino acid-binding protein
2772	 61.48	0	2946860..2948593	-	577	86610272	purH	CYB_2851	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2773	 58.85	0	2948746..2949525	-	259	86610273	cysE	CYB_2852	-	serine O-acetyltransferase
2774	 60.74	0	2949662..2951179	-	505	86610274	-	CYB_2853	-	hypothetical protein
2775	 61.79	0	2951360..2952262	-	300	86610275	ubiA	CYB_2854	-	prenyltransferase
2776	 57.80	0	2952637..2953380	+	247	86610276	-	CYB_2856	-	DNA-binding response regulator
2777	 64.43	+1	2953377..2954759	-	460	86610277	-	CYB_2855	-	polyA polymerase family protein
2778	 61.55	0	2954905..2955939	-	344	86610278	hemH	CYB_2857	-	ferrochelatase
2779	 59.83	0	2956212..2956679	-	155	86610279	-	CYB_2858	-	hypothetical protein
2780	 58.74	0	2956992..2957483	+	163	86610280	-	CYB_2859	-	hypothetical protein
2781	 59.42	0	2957576..2958127	+	183	86610281	moaC	CYB_2860	-	molybdenum cofactor biosynthesis protein C
2782	 60.02	0	2958121..2960031	+	636	86610282	-	CYB_2861	-	hypothetical protein
2783	 54.53	0	2960025..2961029	+	334	86610283	-	CYB_2862	-	hypothetical protein
2784	 62.03	0	2961046..2961606	+	186	86610284	-	CYB_2863	-	hexapaptide repeat-containing transferase
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.