IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2656	 62.11	0	2826360..2827061	-	233	86610158	-	CYB_2732	-	hypothetical protein
2657	 58.04	0	2827533..2828633	+	366	86610159	-	CYB_2734	-	RNA polymerase sigma factor SigC
2658	 62.36	0	2828630..2830276	-	548	86610160	mviN	CYB_2733	-	integral membrane protein MviN
2659	 54.88	0	2830276..2831565	-	429	86610161	-	CYB_2735	-	ISSoc1, transposase
2660	 61.73	0	2831818..2832648	-	276	86610162	cpcE-2	CYB_2736	-	phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit
2661	 60.02	0	2832682..2833539	-	285	86610163	cpcC	CYB_2737	-	phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod
2662	 58.00	0	2833868..2834017	+	49	86610164	-	CYB_2739	-	hypothetical protein
2663	 61.49	0	2834010..2834492	-	160	86610165	cpcA-2	CYB_2738	-	phycocyanin, alpha subunit
2664	 57.42	0	2834686..2835204	-	172	86610166	cpcB-2	CYB_2740	-	phycocyanin, beta subunit
2665	 60.67	0	2835853..2836452	+	199	86610167	cpeT	CYB_2741	-	CpeT protein
2666	 59.77	0	2836654..2837769	+	371	86610168	-	CYB_2743	-	hypothetical protein
2667	 56.02	0	2837761..2837976	-	71	86610169	-	CYB_2742	-	hypothetical protein
2668	 45.29	-2	2838369..2840609	+	746	86610170	-	CYB_2744	-	piwi domain-containing protein
2669	 58.46	0	2840674..2840868	+	64	86610171	-	CYB_2745	-	hypothetical protein
2670	 61.97	0	2840998..2842233	+	411	86610172	-	CYB_2746	-	hypothetical protein
2671	 60.44	0	2842241..2842738	+	165	86610173	-	CYB_2747	-	NUDIX family hydrolase
2672	 58.31	0	2843127..2844371	+	414	86610174	-	CYB_2748	-	response regulator
2673	 53.07	-1	2844419..2844793	+	124	86610175	-	CYB_2749	-	response regulator
2674	 56.28	0	2844901..2845449	+	182	86610176	-	CYB_2750	-	CheW domain-containing protein
2675	 59.87	0	2845498..2847735	+	745	86610177	-	CYB_2751	-	putative methyl-accepting chemotaxis protein
2676	 61.98	0	2847737..2850508	+	923	86610178	-	CYB_2752	-	sensor histidine kinase/response regulator
2677	 60.25	0	2850512..2850994	+	160	86610179	-	CYB_2754	-	hypothetical protein
2678	 61.45	0	2850970..2851659	-	229	86610180	-	CYB_2753	-	hypothetical protein
2679	 61.04	0	2851658..2852635	+	325	86610181	accA	CYB_2755	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2680	 62.22	0	2852931..2854706	-	591	86610182	-	CYB_2756	-	phospholipase D/competence protein ComEA
2681	 61.78	0	2854866..2855417	+	183	86610183	-	CYB_2757	-	fasciclin domain-containing protein
2682	 60.56	0	2855485..2855664	+	59	86610184	-	CYB_2758	-	hypothetical protein
2683	 60.96	0	2855903..2857357	+	484	86610185	-	CYB_2759	-	GTP-binding domain-containing protein
2684	 62.93	+1	2857718..2858011	+	97	86610186	-	CYB_2761	-	hypothetical protein
2685	 59.48	0	2858008..2859468	-	486	86610187	-	CYB_2760	-	putative bacteriochlorophyll delivery (BCD) family protein
2686	 59.15	0	2859638..2860702	+	354	86610188	-	CYB_2762	-	hypothetical protein
2687	 58.82	0	2861094..2861297	+	67	86610189	-	CYB_2763	-	hypothetical protein
2688	 60.53	0	2861533..2862999	+	488	86610190	-	CYB_2764	-	hypothetical protein
2689	 56.56	0	2863171..2865693	+	840	86610191	-	CYB_2765	-	endonuclease/exonuclease/phosphatase family protein
2690	 57.25	0	2865694..2865831	+	45	86610192	-	CYB_2766	-	hypothetical protein
2691	 61.97	0	2865971..2867077	-	368	86610193	cbiD	CYB_2767	-	cobalt-precorrin-6A synthase
2692	 57.63	0	2867277..2867630	+	117	86610194	-	CYB_2768	-	hypothetical protein
2693	 59.39	0	2867669..2868259	-	196	86610195	def	CYB_2769	-	peptide deformylase
2694	 53.65	-1	2868402..2868716	-	104	86610196	-	CYB_2770	-	hypothetical protein
2695	 60.86	0	2868720..2869046	-	108	86610197	-	CYB_2771	-	hypothetical protein
2696	 52.43	-1	2869046..2869312	-	88	86610198	-	CYB_2772	-	phycobilisome degradation protein nblA, putative
2697	 58.33	0	2869342..2869437	+	31	86610199	-	CYB_2773	-	hypothetical protein
2698	 54.37	-1	2869600..2869851	+	83	86610200	-	CYB_2774	-	putative RNA-binding protein
2699	 59.16	0	2869975..2871279	+	434	86610201	sbcD	CYB_2775	-	nuclease SbcCD, D subunit
2700	 50.41	-1	2871799..2872044	+	81	86610202	-	CYB_2776	-	hypothetical protein
2701	 57.50	0	2872503..2872742	+	79	86610203	-	CYB_2778	-	hypothetical protein
2702	 61.00	0	2872847..2874769	-	640	86610204	speA	CYB_2779	-	arginine decarboxylase
2703	 62.31	0	2875217..2876317	+	366	86610205	pstS-3	CYB_2780	-	phosphate ABC transporter, periplasmic phosphate-binding protein
2704	 61.60	0	2876608..2878500	+	630	86610206	dnaK-1	CYB_2781	-	molecular chaperone DnaK
2705	 57.08	0	2878709..2879668	+	319	86610207	-	CYB_2782	-	DnaJ family protein
2706	 61.25	0	2879809..2880639	-	276	86610208	-	CYB_2783	-	RNA methyltransferase
2707	 61.05	0	2880707..2881294	+	195	86610209	-	CYB_2784	-	putative lipoprotein
2708	 61.99	0	2881309..2882163	+	284	86610210	lpxC	CYB_2785	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2709	 59.88	0	2882377..2882877	+	166	86610211	fabZ	CYB_2786	-	(3R)-hydroxymyristoyl-ACP dehydratase
2710	 59.88	0	2883111..2884097	+	328	86610212	lpxA	CYB_2787	-	UDP-N-acetylglucosamine acyltransferase
2711	 63.36	+1	2884124..2885332	+	402	86610213	lpxB	CYB_2789	-	lipid-A-disaccharide synthase
2712	 56.48	0	2885329..2886801	-	490	86610214	-	CYB_2788	-	hypothetical protein
2713	 58.80	0	2887174..2888088	+	304	86610215	-	CYB_2791	-	sensor histidine kinase
2714	 58.33	0	2888078..2888569	-	163	86610216	-	CYB_2790	-	hypothetical protein
2715	 48.44	-2	2889313..2889729	+	138	86610217	-	CYB_2792	-	hypothetical protein
2716	 57.36	0	2889963..2890220	+	85	86610218	-	CYB_2793	-	hypothetical protein
2717	 60.42	0	2890402..2892402	-	666	162139626	tynA	CYB_2794	-	tyramine oxidase
2718	 56.78	0	2893312..2895972	+	886	86610220	-	CYB_2795	-	sensory box histidine kinase
2719	 57.12	0	2896427..2896981	+	184	86610221	-	CYB_2797	-	hypothetical protein
2720	 54.55	0	2897084..2897413	-	109	86610222	rpsT	CYB_2798	-	30S ribosomal protein S20
2721	 61.03	0	2897501..2898865	+	454	86610223	-	CYB_2800	-	FG-GAP repeat- ASPIC/UnbV domain-containing protein
2722	 59.30	0	2898862..2899839	-	325	86610224	moaA	CYB_2799	-	molybdenum cofactor biosynthesis protein MoaA
2723	 60.69	0	2900036..2901943	-	635	86610225	-	CYB_2801	-	monovalent cation:proton antiporter-2 (CPA2) family protein
2724	 59.16	0	2902368..2902820	+	150	86610226	-	CYB_2802	-	hypothetical protein
2725	 57.45	0	2902854..2902994	-	46	86610227	-	CYB_2803	-	hypothetical protein
2726	 57.40	0	2903069..2904493	-	474	86610228	glnA-2	CYB_2804	-	glutamine synthetase, type I
2727	 56.79	0	2904742..2904903	+	53	86610229	-	CYB_2805	-	hypothetical protein
2728	 58.98	0	2904959..2906389	+	476	86610230	trxB	CYB_2806	-	thioredoxin-disulfide reductase
2729	 63.72	+1	2906476..2908782	-	768	86610231	purL	CYB_2807	-	phosphoribosylformylglycinamidine synthase II
2730	 62.25	0	2908804..2911317	-	837	86610232	recG	CYB_2808	-	ATP-dependent DNA helicase RecG
2731	 59.14	0	2911524..2911616	-	30	86610233	psaM	CYB_2809	-	photosystem I reaction center subunit XII
2732	 61.29	0	2912030..2913313	+	427	86610234	glyA	CYB_2810	-	serine hydroxymethyltransferase
2733	 61.40	0	2913347..2914447	+	366	86610235	-	CYB_2811	-	glycosyl transferase, group 4 family protein
2734	 60.09	0	2914444..2915112	+	222	86610236	-	CYB_2812	-	hypothetical protein
2735	 61.93	0	2915118..2915645	-	175	86610237	apt	CYB_2813	-	adenine phosphoribosyltransferase
2736	 58.68	0	2915856..2916293	+	145	86610238	-	CYB_2814	-	hypothetical protein
2737	 63.59	+1	2916339..2918288	-	649	86610239	-	CYB_2815	-	NHL repeat-containing protein
2738	 61.62	0	2918611..2919879	-	422	86610240	-	CYB_2816	-	hypothetical protein
2739	 64.25	+1	2920310..2920888	-	192	86610241	-	CYB_2817	-	DNA-3-methyladenine glycosylase
2740	 57.61	0	2920915..2921190	-	91	86610242	-	CYB_2818	-	MoaD family protein
2741	 62.84	+1	2921227..2921748	-	173	86610243	-	CYB_2819	-	fasciclin domain-containing protein
2742	 61.00	0	2921853..2923193	-	446	86610244	thrC-2	CYB_2820	-	threonine synthase
2743	 58.33	0	2923342..2923497	+	51	86610245	-	CYB_2821	-	hypothetical protein
2744	 62.63	+1	2923704..2925635	+	643	86610246	gidA	CYB_2823	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2745	 65.48	+1	2925599..2926693	-	364	86610247	gcp	CYB_2822	-	O-sialoglycoprotein endopeptidase
2746	 58.06	0	2926899..2927444	+	181	86610248	psaF	CYB_2824	-	photosystem I reaction center subunit III
2747	 45.83	-2	2927489..2927608	+	39	86610249	psaJ	CYB_2825	-	photosystem I reaction center subunit IX
2748	 58.54	0	2927710..2928189	+	159	86610250	psaL-2	CYB_2826	-	photosystem I reaction center protein subunit XI
2749	 52.08	-1	2928199..2928438	+	79	86610251	-	CYB_2827	-	hypothetical protein
2750	 61.34	0	2928604..2929035	+	143	86610252	-	CYB_2828	-	hypothetical protein
2751	 58.66	0	2929069..2930205	+	378	86610253	-	CYB_2829	-	RNA methyltransferase
2752	 58.14	0	2930228..2930485	+	85	86610254	-	CYB_2830	-	hypothetical protein
2753	 56.60	0	2930485..2930802	+	105	86610255	-	CYB_2831	-	ferredoxin, 2Fe-2S
2754	 59.90	0	2931331..2931537	+	68	86610256	-	CYB_2832	-	hypothetical protein
2755	 63.09	+1	2931711..2932577	+	288	86610257	thiD	CYB_2833	-	phosphomethylpyrimidine kinase
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.