IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2612	 63.91	+1	2771313..2772692	-	459	86610114	trmE	CYB_2687	-	tRNA modification GTPase TrmE
2613	 59.52	0	2772843..2775443	+	866	86610115	glgP	CYB_2688	-	alpha-glucan phosphorylases
2614	 60.08	0	2775856..2776917	+	353	86610116	-	CYB_2690	-	TPR repeat-containing protein
2615	 59.14	0	2776914..2777723	-	269	86610117	-	CYB_2689	-	DNA-binding response regulator
2616	 60.96	0	2777873..2779012	+	379	86610118	fni	CYB_2691	-	isopentenyl pyrophosphate isomerase
2617	 57.91	0	2779284..2780882	-	532	86610119	-	CYB_2692	-	hypothetical protein
2618	 58.91	0	2781228..2781923	-	231	86610120	-	CYB_2694	-	hypothetical protein
2619	 61.39	0	2782184..2783338	-	384	86610121	-	CYB_2695	-	FAD-binding protein
2620	 50.83	-1	2783382..2784644	-	420	86610122	-	CYB_2696	-	ISSoc12, transposase
2621	 59.67	0	2785261..2786232	+	323	86610123	coxB	CYB_2697	-	cytochrome c oxidase, subunit II
2622	 56.88	0	2786310..2788016	+	568	86610124	ctaD	CYB_2698	-	cytochrome c oxidase, subunit I
2623	 55.23	0	2788135..2788746	+	203	86610125	ctaE	CYB_2700	-	cytochrome c oxidase, subunit III
2624	 57.20	0	2788734..2789726	-	330	86610126	holA	CYB_2699	-	DNA polymerase III subunit delta
2625	 55.93	0	2789872..2791026	-	384	86610127	-	CYB_2701	-	ISSoc8, transposase
2626	 50.63	-1	2791341..2791577	+	78	86610128	-	CYB_2702	-	hypothetical protein
2627	 59.89	0	2791954..2793369	+	471	86610129	-	CYB_2703	-	putative inorganic carbon transporter/0-antigen polymerase (ICT/OAP) family protein
2628	 52.80	-1	2793521..2793859	+	112	86610130	glnB	CYB_2704	-	nitrogen regulatory protein P-II
2629	 57.61	0	2794011..2795423	+	470	86610131	amt	CYB_2705	-	ammonium transporter
2630	 59.04	0	2795623..2796291	+	222	86610132	ispD	CYB_2706	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2631	 55.34	0	2796783..2798000	+	405	86610133	-	CYB_2707	-	ISSoc1, transposase
2632	 62.80	+1	2798462..2799262	+	266	86610134	cobM	CYB_2708	-	precorrin-4 C11-methyltransferase
2633	 58.59	0	2799601..2801532	+	643	86610135	-	CYB_2709	-	TPR repeat-containing protein
2634	 61.47	0	2801571..2802398	+	275	86610136	rhdA	CYB_2710	-	thiosulfate sulfurtransferase
2635	 61.15	0	2802395..2803573	+	392	86610137	-	CYB_2711	-	pyridine nucleotide-disulphide oxidoreductase
2636	 59.63	0	2803741..2804223	+	160	86610138	-	CYB_2712	-	NifU family SUF system FeS assembly protein
2637	 64.18	+1	2804326..2806095	+	589	86610139	-	CYB_2714	-	ISSoc9, transposase
2638	 59.42	0	2806084..2806359	-	91	86610140	-	CYB_2713	-	BolA/YrbA family protein
2639	 58.82	0	2806460..2807440	-	326	86610141	-	CYB_2715	-	D12 class N6 adenine-specific DNA methyltransferase
2640	 61.96	0	2807448..2809421	-	657	86610142	-	CYB_2716	-	M3B family peptidase
2641	 58.39	0	2809421..2809891	-	156	86610143	-	CYB_2717	-	hypothetical protein
2642	 65.25	+1	2809891..2811441	+	516	86610144	-	CYB_2718	-	Mg chelatase-like protein
2643	 63.52	+1	2811529..2812671	-	380	86610145	recF	CYB_2719	-	recombination protein F
2644	 57.41	0	2812724..2812831	+	35	86610146	-	CYB_2720	-	hypothetical protein
2645	 62.48	0	2812838..2813530	-	230	86610147	-	CYB_2721	-	hypothetical protein
2646	 62.01	0	2813527..2814921	-	464	86610148	-	CYB_2722	-	sensor histidine kinase
2647	 60.29	0	2815070..2815759	-	229	86610149	-	CYB_2723	-	DNA-binding response regulator
2648	 58.33	0	2815852..2816235	+	127	86610150	-	CYB_2724	-	hypothetical protein
2649	 60.25	0	2816532..2817419	-	295	86610151	-	CYB_2725	-	iron chelate ABC transporter periplasmic substrate-binding protein
2650	 65.24	+1	2817452..2818783	-	443	86610152	-	CYB_2726	-	TonB family protein
2651	 60.70	0	2818830..2821259	-	809	86610153	-	CYB_2727	-	TonB-dependent heme/hemoglobin receptor family protein
2652	 64.51	+1	2821324..2822157	-	277	86610154	-	CYB_2728	-	iron chelate ABC transporter ATP-binding protein
2653	 64.94	+1	2822154..2823197	-	347	86610155	-	CYB_2729	-	iron chelate ABC transporter permease protein
2654	 58.33	0	2823432..2823659	+	75	86610156	-	CYB_2730	-	hypothetical protein
2655	 63.13	+1	2823703..2826357	+	884	86610157	mutS	CYB_2731	-	DNA mismatch repair protein
2656	 62.11	0	2826360..2827061	-	233	86610158	-	CYB_2732	-	hypothetical protein
2657	 58.04	0	2827533..2828633	+	366	86610159	-	CYB_2734	-	RNA polymerase sigma factor SigC
2658	 62.36	0	2828630..2830276	-	548	86610160	mviN	CYB_2733	-	integral membrane protein MviN
2659	 54.88	0	2830276..2831565	-	429	86610161	-	CYB_2735	-	ISSoc1, transposase
2660	 61.73	0	2831818..2832648	-	276	86610162	cpcE-2	CYB_2736	-	phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit
2661	 60.02	0	2832682..2833539	-	285	86610163	cpcC	CYB_2737	-	phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod
2662	 58.00	0	2833868..2834017	+	49	86610164	-	CYB_2739	-	hypothetical protein
2663	 61.49	0	2834010..2834492	-	160	86610165	cpcA-2	CYB_2738	-	phycocyanin, alpha subunit
2664	 57.42	0	2834686..2835204	-	172	86610166	cpcB-2	CYB_2740	-	phycocyanin, beta subunit
2665	 60.67	0	2835853..2836452	+	199	86610167	cpeT	CYB_2741	-	CpeT protein
2666	 59.77	0	2836654..2837769	+	371	86610168	-	CYB_2743	-	hypothetical protein
2667	 56.02	0	2837761..2837976	-	71	86610169	-	CYB_2742	-	hypothetical protein
2668	 45.29	-2	2838369..2840609	+	746	86610170	-	CYB_2744	-	piwi domain-containing protein
2669	 58.46	0	2840674..2840868	+	64	86610171	-	CYB_2745	-	hypothetical protein
2670	 61.97	0	2840998..2842233	+	411	86610172	-	CYB_2746	-	hypothetical protein
2671	 60.44	0	2842241..2842738	+	165	86610173	-	CYB_2747	-	NUDIX family hydrolase
2672	 58.31	0	2843127..2844371	+	414	86610174	-	CYB_2748	-	response regulator
2673	 53.07	-1	2844419..2844793	+	124	86610175	-	CYB_2749	-	response regulator
2674	 56.28	0	2844901..2845449	+	182	86610176	-	CYB_2750	-	CheW domain-containing protein
2675	 59.87	0	2845498..2847735	+	745	86610177	-	CYB_2751	-	putative methyl-accepting chemotaxis protein
2676	 61.98	0	2847737..2850508	+	923	86610178	-	CYB_2752	-	sensor histidine kinase/response regulator
2677	 60.25	0	2850512..2850994	+	160	86610179	-	CYB_2754	-	hypothetical protein
2678	 61.45	0	2850970..2851659	-	229	86610180	-	CYB_2753	-	hypothetical protein
2679	 61.04	0	2851658..2852635	+	325	86610181	accA	CYB_2755	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2680	 62.22	0	2852931..2854706	-	591	86610182	-	CYB_2756	-	phospholipase D/competence protein ComEA
2681	 61.78	0	2854866..2855417	+	183	86610183	-	CYB_2757	-	fasciclin domain-containing protein
2682	 60.56	0	2855485..2855664	+	59	86610184	-	CYB_2758	-	hypothetical protein
2683	 60.96	0	2855903..2857357	+	484	86610185	-	CYB_2759	-	GTP-binding domain-containing protein
2684	 62.93	+1	2857718..2858011	+	97	86610186	-	CYB_2761	-	hypothetical protein
2685	 59.48	0	2858008..2859468	-	486	86610187	-	CYB_2760	-	putative bacteriochlorophyll delivery (BCD) family protein
2686	 59.15	0	2859638..2860702	+	354	86610188	-	CYB_2762	-	hypothetical protein
2687	 58.82	0	2861094..2861297	+	67	86610189	-	CYB_2763	-	hypothetical protein
2688	 60.53	0	2861533..2862999	+	488	86610190	-	CYB_2764	-	hypothetical protein
2689	 56.56	0	2863171..2865693	+	840	86610191	-	CYB_2765	-	endonuclease/exonuclease/phosphatase family protein
2690	 57.25	0	2865694..2865831	+	45	86610192	-	CYB_2766	-	hypothetical protein
2691	 61.97	0	2865971..2867077	-	368	86610193	cbiD	CYB_2767	-	cobalt-precorrin-6A synthase
2692	 57.63	0	2867277..2867630	+	117	86610194	-	CYB_2768	-	hypothetical protein
2693	 59.39	0	2867669..2868259	-	196	86610195	def	CYB_2769	-	peptide deformylase
2694	 53.65	-1	2868402..2868716	-	104	86610196	-	CYB_2770	-	hypothetical protein
2695	 60.86	0	2868720..2869046	-	108	86610197	-	CYB_2771	-	hypothetical protein
2696	 52.43	-1	2869046..2869312	-	88	86610198	-	CYB_2772	-	phycobilisome degradation protein nblA, putative
2697	 58.33	0	2869342..2869437	+	31	86610199	-	CYB_2773	-	hypothetical protein
2698	 54.37	-1	2869600..2869851	+	83	86610200	-	CYB_2774	-	putative RNA-binding protein
2699	 59.16	0	2869975..2871279	+	434	86610201	sbcD	CYB_2775	-	nuclease SbcCD, D subunit
2700	 50.41	-1	2871799..2872044	+	81	86610202	-	CYB_2776	-	hypothetical protein
2701	 57.50	0	2872503..2872742	+	79	86610203	-	CYB_2778	-	hypothetical protein
2702	 61.00	0	2872847..2874769	-	640	86610204	speA	CYB_2779	-	arginine decarboxylase
2703	 62.31	0	2875217..2876317	+	366	86610205	pstS-3	CYB_2780	-	phosphate ABC transporter, periplasmic phosphate-binding protein
2704	 61.60	0	2876608..2878500	+	630	86610206	dnaK-1	CYB_2781	-	molecular chaperone DnaK
2705	 57.08	0	2878709..2879668	+	319	86610207	-	CYB_2782	-	DnaJ family protein
2706	 61.25	0	2879809..2880639	-	276	86610208	-	CYB_2783	-	RNA methyltransferase
2707	 61.05	0	2880707..2881294	+	195	86610209	-	CYB_2784	-	putative lipoprotein
2708	 61.99	0	2881309..2882163	+	284	86610210	lpxC	CYB_2785	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2709	 59.88	0	2882377..2882877	+	166	86610211	fabZ	CYB_2786	-	(3R)-hydroxymyristoyl-ACP dehydratase
2710	 59.88	0	2883111..2884097	+	328	86610212	lpxA	CYB_2787	-	UDP-N-acetylglucosamine acyltransferase
2711	 63.36	+1	2884124..2885332	+	402	86610213	lpxB	CYB_2789	-	lipid-A-disaccharide synthase
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.