IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2463	 60.47	0	2634102..2636165	+	687	86609965	-	CYB_2532	-	prolyl oligopeptidase
2464	 60.20	0	2636162..2637445	-	427	86609966	eno	CYB_2531	-	phosphopyruvate hydratase
2465	 55.41	0	2637684..2638358	-	224	86609967	ntcA	CYB_2533	-	nitrogen-responsive regulatory protein
2466	 57.10	0	2638664..2640514	+	616	86609968	-	CYB_2534	-	M61 family peptidase
2467	 43.96	-2	2640598..2641905	+	435	86609969	-	CYB_2535	-	hypothetical protein
2468	 60.14	0	2641936..2642823	-	295	86609970	-	CYB_2536	-	hypothetical protein
2469	 55.06	0	2643154..2643696	+	180	86609971	-	CYB_2537	-	cytochrome c-550
2470	 58.84	0	2643696..2644193	+	165	86609972	-	CYB_2539	-	cytochrome c-550
2471	 55.11	0	2644165..2645358	-	397	86609973	-	CYB_2538	-	ISSoc1, transposase
2472	 59.07	0	2645493..2646242	-	249	86609974	ureF	CYB_2540	-	urease accessory protein UreF
2473	 55.85	0	2646246..2646818	-	190	86609975	yfiA	CYB_2541	-	ribosomal subunit interface protein
2474	 60.48	0	2647746..2648990	+	414	86609976	-	CYB_2542	-	aluminium resistance protein
2475	 59.73	0	2649088..2649894	+	268	86609977	-	CYB_2543	-	pre-peptidase C-terminal domain-containing protein
2476	 49.79	-2	2650188..2650430	+	80	86609978	-	CYB_2544	-	hypothetical protein
2477	 61.01	0	2650458..2650775	+	105	86609979	-	CYB_2546	-	hypothetical protein
2478	 55.64	0	2650772..2651170	-	132	86609980	hypA	CYB_2545	-	hydrogenase nickel insertion protein HypA
2479	 61.00	0	2651825..2653042	-	405	86609981	argJ	CYB_2548	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2480	 57.39	0	2653239..2654057	+	272	86609982	-	CYB_2549	-	ABC transporter, ATP-binding protein
2481	 57.14	0	2654319..2655116	+	265	86609983	-	CYB_2550	-	ABC transporter, permease protein
2482	 61.41	0	2655375..2656382	-	335	86609984	-	CYB_2551	-	phosphate ABC transporter periplasmic substrate-binding protein
2483	 61.28	0	2656486..2658546	-	686	86609985	-	CYB_2552	-	VacB/RNB family exoribonuclease
2484	 55.24	0	2659064..2659702	+	212	86609986	-	CYB_2553	-	LuxR family DNA-binding response regulator
2485	 51.52	-1	2659776..2659940	+	54	86609987	-	CYB_2554	-	hypothetical protein
2486	 59.18	0	2660114..2660995	-	293	86609988	-	CYB_2555	-	LysR family transcriptional regulator
2487	 54.19	-1	2661170..2661634	+	154	86609989	-	CYB_2556	-	hypothetical protein
2488	 56.90	0	2661653..2662870	-	405	86609990	-	CYB_2557	-	ISSoc1, transposase
2489	 60.49	0	2662984..2663679	+	231	86609991	deoC	CYB_2558	-	deoxyribose-phosphate aldolase
2490	 60.72	0	2663676..2664533	+	285	86609992	recO	CYB_2559	-	DNA repair protein RecO
2491	 60.73	0	2664997..2665737	+	246	86609993	-	CYB_2561	-	DNA-binding response regulator
2492	 62.07	0	2665710..2667557	-	615	86609994	-	CYB_2560	-	TPR repeat-containing protein
2493	 58.33	0	2667986..2668201	-	71	86609995	-	CYB_2562	-	hypothetical protein
2494	 53.97	-1	2668439..2668690	+	83	86609996	-	CYB_2563	-	hypothetical protein
2495	 60.74	0	2668806..2669480	-	224	86609997	-	CYB_2564	-	riboflavin biosynthesis protein RibD domain-containing protein
2496	 61.87	0	2669587..2669982	+	131	86609998	-	CYB_2565	-	hypothetical protein
2497	 60.48	0	2670285..2671964	+	559	86609999	-	CYB_2566	-	hypothetical protein
2498	 57.84	0	2672142..2672447	+	101	86610000	clpS	CYB_2568	-	ATP-dependent Clp protease adaptor
2499	 64.29	+1	2672396..2673532	-	378	86610001	-	CYB_2567	-	hypothetical protein
2500	 51.54	-1	2673674..2673997	+	107	86610002	-	CYB_2569	-	hypothetical protein
2501	 56.67	0	2674026..2674475	+	149	86610003	-	CYB_2570	-	FUR family transcriptional regulator
2502	 61.48	0	2674475..2674975	+	166	86610004	-	CYB_2571	-	hypothetical protein
2503	 59.59	0	2675267..2675803	+	178	86610005	-	CYB_2573	-	hypothetical protein
2504	 62.68	+1	2675800..2676627	-	275	86610006	-	CYB_2572	-	DnaJ domain-containing protein
2505	 54.83	0	2676757..2678328	-	523	86610007	-	CYB_2574	-	radical SAM domain-containing protein
2506	 59.79	0	2678480..2679832	+	450	86610008	-	CYB_2575	-	serine/threonine protein kinase
2507	 63.50	+1	2680579..2681337	+	252	86610009	-	CYB_2576	-	hypothetical protein
2508	 57.36	0	2681523..2681855	-	110	86610010	cbbS	CYB_2577	-	ribulose bisphosphate carboxylase, small subunit
2509	 57.35	0	2681864..2682271	-	135	86610011	rbcX	CYB_2578	-	chaperon-like protein RbcX
2510	 59.16	0	2682338..2683762	-	474	86610012	rbcL	CYB_2579	-	ribulose bisophosphate carboxylase
2511	 54.84	0	2684183..2684275	-	30	86610013	-	CYB_2580	-	hypothetical protein
2512	 55.06	0	2684272..2684874	-	200	86610014	clpP-2	CYB_2581	-	ATP-dependent Clp protease, proteolytic subunit ClpP
2513	 54.05	-1	2685098..2685208	+	36	86610015	-	CYB_2582	-	hypothetical protein
2514	 56.60	0	2685411..2685569	-	52	86610016	-	CYB_2584	-	hypothetical protein
2515	 54.31	-1	2685648..2685995	-	115	86610017	-	CYB_2585	-	hypothetical protein
2516	 58.89	0	2686481..2687728	+	415	86610018	-	CYB_2587	-	hypothetical protein
2517	 63.27	+1	2687725..2689137	-	470	86610019	cobB	CYB_2586	-	cobyrinic acid a,c-diamide synthase
2518	 60.16	0	2689154..2689921	-	255	86610020	cobO-2	CYB_2588	-	cob(I)alamin adenosyltransferase
2519	 58.27	0	2690054..2690422	+	122	86610021	-	CYB_2589	-	putative lipoprotein
2520	 60.96	0	2690915..2692159	+	414	86610022	metK	CYB_2590	-	S-adenosylmethionine synthetase
2521	 43.14	-2	2692188..2692595	-	135	86610023	-	CYB_2591	-	ISSoc13, transposase orfB
2522	 44.71	-2	2692553..2692930	-	125	86610024	-	CYB_2592	-	ISSoc13, transposase orfA
2523	 60.69	0	2693001..2693519	-	172	86610025	-	CYB_2593	-	molybdenum cofactor biosynthesis domain-containing protein
2524	 61.93	0	2693556..2694083	-	175	86610026	-	CYB_2594	-	hypothetical protein
2525	 60.95	0	2694268..2696505	-	745	86610027	-	CYB_2595	-	hypothetical protein
2526	 62.48	0	2699499..2700143	+	214	86610028	rplC	CYB_2597	-	50S ribosomal protein L3
2527	 61.41	0	2700194..2701144	+	316	86610029	rplD	CYB_2598	-	ribosomal protein L4
2528	 60.67	0	2701137..2701436	+	99	86610030	rplW	CYB_2599	-	50S ribosomal protein L23
2529	 63.50	+1	2701486..2702370	+	294	86610031	rplB	CYB_2600	-	50S ribosomal protein L2
2530	 56.38	0	2702437..2702718	+	93	86610032	rpsS	CYB_2601	-	ribosomal protein S19
2531	 61.60	0	2702764..2703138	+	124	86610033	rplV	CYB_2602	-	50S ribosomal protein L22
2532	 60.57	0	2703181..2703951	+	256	86610034	rpsC	CYB_2603	-	30S ribosomal protein S3
2533	 59.83	0	2704007..2704474	+	155	86610035	rplP	CYB_2604	-	50S ribosomal protein L16
2534	 56.31	0	2704488..2704709	+	73	86610036	rpmC	CYB_2605	-	50S ribosomal protein L29
2535	 51.59	-1	2704709..2704960	+	83	86610037	rpsQ	CYB_2606	-	30S ribosomal protein S17
2536	 56.91	0	2704957..2705325	+	122	86610038	rplN	CYB_2607	-	50S ribosomal protein L14
2537	 55.14	0	2705325..2705723	+	132	86610039	rplX	CYB_2608	-	ribosomal protein L24
2538	 55.80	0	2705792..2706334	+	180	86610040	rplE	CYB_2609	-	50S ribosomal protein L5
2539	 59.61	0	2706381..2706791	+	136	86610041	rpsH	CYB_2610	-	30S ribosomal protein S8
2540	 58.06	0	2706825..2707370	+	181	86610042	rplF	CYB_2611	-	50S ribosomal protein L6
2541	 58.81	0	2707402..2707770	+	122	86610043	rplR	CYB_2612	-	50S ribosomal protein L18
2542	 60.89	0	2707789..2708325	+	178	86610044	rpsE	CYB_2613	-	30S ribosomal protein S5
2543	 63.36	+1	2708363..2708815	+	150	86610045	rplO	CYB_2614	-	50S ribosomal protein L15
2544	 56.51	0	2708968..2710266	+	432	86610046	secY	CYB_2615	-	preprotein translocase subunit SecY
2545	 61.17	0	2710266..2710847	+	193	86610047	adk	CYB_2616	-	adenylate kinase
2546	 59.56	0	2710886..2711659	+	257	86610048	map-2	CYB_2617	-	methionine aminopeptidase
2547	 52.89	-1	2711790..2712014	+	74	86610049	infA	CYB_2618	-	translation initiation factor IF-1
2548	 57.53	0	2712092..2712682	+	196	86610050	-	CYB_2619	-	hypothetical protein
2549	 60.52	0	2712989..2713297	+	102	86610051	-	CYB_2620	-	hypothetical protein
2550	 58.90	0	2713442..2714329	-	295	86610052	-	CYB_2621	-	PRC-barrel domain-containing protein
2551	 61.75	0	2714417..2715556	-	379	86610053	-	CYB_2622	-	glycosyl transferase, group 1 family protein
2552	 57.40	0	2715650..2716102	-	150	86610054	-	CYB_2623	-	Rieske family iron-sulfur cluster-binding protein
2553	 51.58	-1	2716343..2716912	-	189	86610055	-	CYB_2624	-	hypothetical protein
2554	 60.68	0	2717150..2719069	-	639	86610056	-	CYB_2625	-	R3H domain-containing protein
2555	 59.46	0	2719085..2720125	-	346	86610057	-	CYB_2626	-	iron-sulfur cluster-binding protein
2556	 57.88	0	2720214..2720657	-	147	86610058	-	CYB_2627	-	hypothetical protein
2557	 59.33	0	2720921..2721424	+	167	86610059	msrB	CYB_2628	-	methionine-R-sulfoxide reductase
2558	 59.83	0	2721474..2722277	+	267	86610060	-	CYB_2629	-	iron permease
2559	 59.15	0	2722676..2722888	-	70	86610061	-	CYB_2630	-	CP12 domain-containing protein
2560	 60.79	0	2723146..2723826	-	226	86610062	-	CYB_2631	-	ABC transporter, ATP-binding protein
2561	 56.67	0	2723863..2724132	-	89	86610063	-	CYB_2632	-	hypothetical protein
2562	 60.35	0	2724284..2724742	-	152	86610064	-	CYB_2633	-	MAPEG family protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.