IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2425	 61.89	0	2589226..2589978	+	250	86609927	mreC	CYB_2493	-	rod shape-determining protein
2426	 57.05	0	2589956..2590600	+	214	86609928	mreD	CYB_2494	-	rod shape-determining protein MreD
2427	 53.47	-1	2590700..2590843	+	47	86609929	-	CYB_2495	-	hypothetical protein
2428	 54.82	0	2590989..2591216	+	75	86609930	-	CYB_2496	-	iron-sulfur cluster-binding protein
2429	 61.61	0	2591415..2591948	-	177	86609931	-	CYB_2497	-	hypothetical protein
2430	 61.39	0	2592797..2593801	-	334	86609932	cobD-2	CYB_2498	-	cobalamin biosynthesis protein CobD
2431	 60.53	0	2593815..2594270	-	151	86609933	-	CYB_2499	-	transcriptional regulator, putative
2432	 62.22	0	2594549..2595538	+	329	86609934	-	CYB_2500	-	tetrapyrrole methylase family protein
2433	 62.39	0	2595567..2596268	+	233	86609935	-	CYB_2501	-	DNA-binding response regulator
2434	 60.18	0	2596453..2597886	-	477	86609936	atpD	CYB_2502	-	F0F1 ATP synthase subunit beta
2435	 63.50	+1	2598071..2598733	+	220	86609937	-	CYB_2503	-	hypothetical protein
2436	 60.74	0	2598753..2599511	+	252	86609938	-	CYB_2505	-	hypothetical protein
2437	 59.80	0	2599495..2599596	-	33	86609939	-	CYB_2504	-	hypothetical protein
2438	 61.92	0	2599598..2600629	+	343	86609940	-	CYB_2507	-	succinate dehydrogenase iron-sulfur subunit
2439	 60.98	0	2600626..2601732	-	368	86609941	-	CYB_2506	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2440	 58.27	0	2602624..2603373	-	249	86609942	-	CYB_2508	-	hypothetical protein
2441	 50.00	-2	2603688..2603843	-	51	86609943	-	CYB_2509	-	hypothetical protein
2442	 57.52	0	2603950..2604660	+	236	86609944	-	CYB_2510	-	hypothetical protein
2443	 61.35	0	2604700..2605941	-	413	86609945	tyrS	CYB_2511	-	tyrosyl-tRNA synthetase
2444	 61.17	0	2606114..2608132	+	672	86609946	-	CYB_2512	-	1A family penicillin-binding protein
2445	 62.78	+1	2608129..2608488	+	119	86609947	-	CYB_2513	-	hypothetical protein
2446	 58.00	0	2608752..2609351	+	199	86609948	sodB	CYB_2514	-	Fe-superoxide dismutase
2447	 61.19	0	2609449..2611092	-	547	86609949	-	CYB_2515	-	serine/threonine protein kinase
2448	 60.94	0	2611355..2613433	+	692	86609950	napA	CYB_2516	-	monovalent cation:proton antiporter-2 (CPA2) family protein
2449	 62.65	+1	2613613..2615805	+	730	86609951	glyS	CYB_2517	-	glycyl-tRNA synthetase subunit beta
2450	 58.87	0	2615878..2616801	-	307	86609952	-	CYB_2518	-	fructosamine kinase family protein
2451	 62.46	0	2617457..2618620	-	387	86609953	-	CYB_2519	-	hypothetical protein
2452	 57.23	0	2619379..2619876	+	165	86609954	-	CYB_2520	-	MarR family transcriptional regulator
2453	 57.96	0	2619922..2621115	+	397	86609955	-	CYB_2521	-	ISSoc1, transposase
2454	 61.86	0	2621229..2622539	+	436	86609956	pyrC	CYB_2522	-	dihydroorotase
2455	 58.71	0	2622808..2623209	+	133	86609957	-	CYB_2523	-	hypothetical protein
2456	 59.82	0	2623215..2625857	-	880	86609958	clpB	CYB_2524	-	ATP-dependent chaperone protein ClpB
2457	 60.76	0	2626057..2628357	-	766	86609959	zam	CYB_2525	-	acetazolamide conferring resistance protein Zam
2458	 57.79	0	2628410..2629051	-	213	86609960	phoU	CYB_2526	-	phosphate transport system regulatory protein PhoU
2459	 52.17	-1	2629050..2629187	+	45	86609961	-	CYB_2527	-	hypothetical protein
2460	 60.02	0	2629261..2630583	+	440	86609962	-	CYB_2528	-	hypothetical protein
2461	 64.37	+1	2630603..2632129	+	508	86609963	-	CYB_2530	-	oxidoreductase, FAD-binding
2462	 60.64	0	2632126..2633949	-	607	86609964	treZ	CYB_2529	-	malto-oligosyltrehalose trehalohydrolase
2463	 60.47	0	2634102..2636165	+	687	86609965	-	CYB_2532	-	prolyl oligopeptidase
2464	 60.20	0	2636162..2637445	-	427	86609966	eno	CYB_2531	-	phosphopyruvate hydratase
2465	 55.41	0	2637684..2638358	-	224	86609967	ntcA	CYB_2533	-	nitrogen-responsive regulatory protein
2466	 57.10	0	2638664..2640514	+	616	86609968	-	CYB_2534	-	M61 family peptidase
2467	 43.96	-2	2640598..2641905	+	435	86609969	-	CYB_2535	-	hypothetical protein
2468	 60.14	0	2641936..2642823	-	295	86609970	-	CYB_2536	-	hypothetical protein
2469	 55.06	0	2643154..2643696	+	180	86609971	-	CYB_2537	-	cytochrome c-550
2470	 58.84	0	2643696..2644193	+	165	86609972	-	CYB_2539	-	cytochrome c-550
2471	 55.11	0	2644165..2645358	-	397	86609973	-	CYB_2538	-	ISSoc1, transposase
2472	 59.07	0	2645493..2646242	-	249	86609974	ureF	CYB_2540	-	urease accessory protein UreF
2473	 55.85	0	2646246..2646818	-	190	86609975	yfiA	CYB_2541	-	ribosomal subunit interface protein
2474	 60.48	0	2647746..2648990	+	414	86609976	-	CYB_2542	-	aluminium resistance protein
2475	 59.73	0	2649088..2649894	+	268	86609977	-	CYB_2543	-	pre-peptidase C-terminal domain-containing protein
2476	 49.79	-2	2650188..2650430	+	80	86609978	-	CYB_2544	-	hypothetical protein
2477	 61.01	0	2650458..2650775	+	105	86609979	-	CYB_2546	-	hypothetical protein
2478	 55.64	0	2650772..2651170	-	132	86609980	hypA	CYB_2545	-	hydrogenase nickel insertion protein HypA
2479	 61.00	0	2651825..2653042	-	405	86609981	argJ	CYB_2548	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2480	 57.39	0	2653239..2654057	+	272	86609982	-	CYB_2549	-	ABC transporter, ATP-binding protein
2481	 57.14	0	2654319..2655116	+	265	86609983	-	CYB_2550	-	ABC transporter, permease protein
2482	 61.41	0	2655375..2656382	-	335	86609984	-	CYB_2551	-	phosphate ABC transporter periplasmic substrate-binding protein
2483	 61.28	0	2656486..2658546	-	686	86609985	-	CYB_2552	-	VacB/RNB family exoribonuclease
2484	 55.24	0	2659064..2659702	+	212	86609986	-	CYB_2553	-	LuxR family DNA-binding response regulator
2485	 51.52	-1	2659776..2659940	+	54	86609987	-	CYB_2554	-	hypothetical protein
2486	 59.18	0	2660114..2660995	-	293	86609988	-	CYB_2555	-	LysR family transcriptional regulator
2487	 54.19	-1	2661170..2661634	+	154	86609989	-	CYB_2556	-	hypothetical protein
2488	 56.90	0	2661653..2662870	-	405	86609990	-	CYB_2557	-	ISSoc1, transposase
2489	 60.49	0	2662984..2663679	+	231	86609991	deoC	CYB_2558	-	deoxyribose-phosphate aldolase
2490	 60.72	0	2663676..2664533	+	285	86609992	recO	CYB_2559	-	DNA repair protein RecO
2491	 60.73	0	2664997..2665737	+	246	86609993	-	CYB_2561	-	DNA-binding response regulator
2492	 62.07	0	2665710..2667557	-	615	86609994	-	CYB_2560	-	TPR repeat-containing protein
2493	 58.33	0	2667986..2668201	-	71	86609995	-	CYB_2562	-	hypothetical protein
2494	 53.97	-1	2668439..2668690	+	83	86609996	-	CYB_2563	-	hypothetical protein
2495	 60.74	0	2668806..2669480	-	224	86609997	-	CYB_2564	-	riboflavin biosynthesis protein RibD domain-containing protein
2496	 61.87	0	2669587..2669982	+	131	86609998	-	CYB_2565	-	hypothetical protein
2497	 60.48	0	2670285..2671964	+	559	86609999	-	CYB_2566	-	hypothetical protein
2498	 57.84	0	2672142..2672447	+	101	86610000	clpS	CYB_2568	-	ATP-dependent Clp protease adaptor
2499	 64.29	+1	2672396..2673532	-	378	86610001	-	CYB_2567	-	hypothetical protein
2500	 51.54	-1	2673674..2673997	+	107	86610002	-	CYB_2569	-	hypothetical protein
2501	 56.67	0	2674026..2674475	+	149	86610003	-	CYB_2570	-	FUR family transcriptional regulator
2502	 61.48	0	2674475..2674975	+	166	86610004	-	CYB_2571	-	hypothetical protein
2503	 59.59	0	2675267..2675803	+	178	86610005	-	CYB_2573	-	hypothetical protein
2504	 62.68	+1	2675800..2676627	-	275	86610006	-	CYB_2572	-	DnaJ domain-containing protein
2505	 54.83	0	2676757..2678328	-	523	86610007	-	CYB_2574	-	radical SAM domain-containing protein
2506	 59.79	0	2678480..2679832	+	450	86610008	-	CYB_2575	-	serine/threonine protein kinase
2507	 63.50	+1	2680579..2681337	+	252	86610009	-	CYB_2576	-	hypothetical protein
2508	 57.36	0	2681523..2681855	-	110	86610010	cbbS	CYB_2577	-	ribulose bisphosphate carboxylase, small subunit
2509	 57.35	0	2681864..2682271	-	135	86610011	rbcX	CYB_2578	-	chaperon-like protein RbcX
2510	 59.16	0	2682338..2683762	-	474	86610012	rbcL	CYB_2579	-	ribulose bisophosphate carboxylase
2511	 54.84	0	2684183..2684275	-	30	86610013	-	CYB_2580	-	hypothetical protein
2512	 55.06	0	2684272..2684874	-	200	86610014	clpP-2	CYB_2581	-	ATP-dependent Clp protease, proteolytic subunit ClpP
2513	 54.05	-1	2685098..2685208	+	36	86610015	-	CYB_2582	-	hypothetical protein
2514	 56.60	0	2685411..2685569	-	52	86610016	-	CYB_2584	-	hypothetical protein
2515	 54.31	-1	2685648..2685995	-	115	86610017	-	CYB_2585	-	hypothetical protein
2516	 58.89	0	2686481..2687728	+	415	86610018	-	CYB_2587	-	hypothetical protein
2517	 63.27	+1	2687725..2689137	-	470	86610019	cobB	CYB_2586	-	cobyrinic acid a,c-diamide synthase
2518	 60.16	0	2689154..2689921	-	255	86610020	cobO-2	CYB_2588	-	cob(I)alamin adenosyltransferase
2519	 58.27	0	2690054..2690422	+	122	86610021	-	CYB_2589	-	putative lipoprotein
2520	 60.96	0	2690915..2692159	+	414	86610022	metK	CYB_2590	-	S-adenosylmethionine synthetase
2521	 43.14	-2	2692188..2692595	-	135	86610023	-	CYB_2591	-	ISSoc13, transposase orfB
2522	 44.71	-2	2692553..2692930	-	125	86610024	-	CYB_2592	-	ISSoc13, transposase orfA
2523	 60.69	0	2693001..2693519	-	172	86610025	-	CYB_2593	-	molybdenum cofactor biosynthesis domain-containing protein
2524	 61.93	0	2693556..2694083	-	175	86610026	-	CYB_2594	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.