IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2335	 58.77	0	2500651..2500764	-	37	86609839	-	CYB_2401	-	hypothetical protein
2336	 58.94	0	2500952..2501611	+	219	86609840	-	CYB_2402	-	CDP-alcohol phosphatidyltransferase family protein
2337	 61.77	0	2501738..2502595	+	285	86609841	-	CYB_2403	-	cyclopropane-fatty-acyl-phospholipid synthase family protein
2338	 59.74	0	2502643..2503263	-	206	86609842	-	CYB_2404	-	uracil-DNA glycosylase
2339	 58.66	0	2503544..2505004	+	486	86609843	-	CYB_2405	-	U62 family peptidase
2340	 56.67	0	2505025..2505474	+	149	90296803	-	CYB_2406	-	hypothetical protein
2341	 44.71	-2	2505501..2505878	+	125	86609844	-	CYB_2407	-	ISSoc13, transposase orfA
2342	 43.14	-2	2505836..2506243	+	135	86609845	-	CYB_2408	-	ISSoc13, transposase orfB
2343	 53.12	-1	2506240..2506704	+	154	90296804	-	CYB_2409	-	hypothetical protein
2344	 54.92	0	2506709..2507857	+	382	86609846	-	CYB_2410	-	ISSoc1, transposase
2345	 58.24	0	2508113..2509453	+	446	86609847	-	CYB_2411	-	tldD/pmbA family protein
2346	 62.03	0	2509469..2510266	+	265	86609848	-	CYB_2412	-	hypothetical protein
2347	 58.74	0	2510263..2510691	+	142	86609849	-	CYB_2413	-	hypothetical protein
2348	 56.17	0	2511197..2511577	-	126	86609850	-	CYB_2415	-	hypothetical protein
2349	 58.99	0	2511618..2514026	-	802	86609851	-	CYB_2416	-	putative helicase
2350	 58.41	0	2514222..2514875	+	217	86609852	trpG	CYB_2417	-	anthranilate synthase component II
2351	 63.01	+1	2514926..2515690	+	254	86609853	-	CYB_2418	-	metallo-beta-lactamase superfamily hydrolase
2352	 63.32	+1	2515695..2516261	+	188	86609854	-	CYB_2419	-	ankyrin repeat-containing protein
2353	 58.85	0	2516272..2517282	-	336	86609855	-	CYB_2420	-	deoxyhypusine synthase family protein
2354	 59.87	0	2517517..2519619	+	700	86609856	-	CYB_2421	-	sensory box histidine kinase
2355	 61.32	0	2519962..2520204	+	80	86609857	-	CYB_2422	-	hypothetical protein
2356	 62.58	+1	2520220..2520537	+	105	86609858	-	CYB_2423	-	hypothetical protein
2357	 57.51	0	2520573..2521610	-	345	86609859	-	CYB_2424	-	CBS domain-containing protein
2358	 62.19	0	2521912..2523540	-	542	86609860	panC/cmk	CYB_2425	-	bifunctional pantoate ligase/cytidylate kinase
2359	 55.26	0	2523604..2523717	-	37	86609861	petG	CYB_2426	-	cytochrome b6-f complex subunit PetG
2360	 61.68	0	2523864..2525267	+	467	86609862	menE	CYB_2428	-	O-succinylbenzoic acid--CoA ligase
2361	 59.60	0	2525264..2525857	-	197	86609863	-	CYB_2427	-	DnaJ domain-containing protein
2362	 52.92	-1	2525863..2526102	+	79	86609864	-	CYB_2429	-	hypothetical protein
2363	 55.56	0	2526099..2526854	+	251	86609865	-	CYB_2430	-	ankyrin repeat-containing protein
2364	 60.84	0	2528013..2528561	-	182	86609866	-	CYB_2431	-	hypothetical protein
2365	 57.41	0	2528662..2529633	-	323	86609867	panE-2	CYB_2432	-	2-dehydropantoate 2-reductase
2366	 60.47	0	2529685..2530233	-	182	86609868	pyrR	CYB_2433	-	pyrR bifunctional protein
2367	 60.64	0	2530394..2530924	+	176	86609869	-	CYB_2434	-	pentapeptide repeat-containing protein
2368	 57.00	0	2531009..2531722	-	237	86609870	-	CYB_2435	-	heme oxygenase
2369	 60.79	0	2532316..2535735	+	1139	86609871	rpoB	CYB_2436	-	DNA-directed RNA polymerase subunit beta
2370	 59.77	0	2535851..2537734	+	627	86609872	rpoC1	CYB_2437	-	DNA-directed RNA polymerase subunit gamma
2371	 61.00	0	2537788..2541702	+	1304	86609873	rpoC2	CYB_2438	-	DNA-directed RNA polymerase subunit beta'
2372	 63.49	+1	2541683..2542405	+	240	86609874	-	CYB_2440	-	uracil-DNA glycosylase family protein
2373	 56.97	0	2542402..2543061	-	219	86609875	-	CYB_2439	-	transcriptional activator TenA, putative
2374	 57.02	0	2543382..2544407	-	341	86609876	-	CYB_2441	-	semialdehyde dehydrogenase family protein
2375	 56.85	0	2544518..2545240	-	240	86609877	-	CYB_2442	-	hypothetical protein
2376	 58.58	0	2545444..2545752	+	102	86609878	-	CYB_2443	-	hypothetical protein
2377	 62.16	0	2545767..2546276	-	169	86609879	-	CYB_2444	-	pentapeptide repeat-containing protein
2378	 61.22	0	2546377..2546670	+	97	86609880	gvpV	CYB_2445	-	gas vesicle protein V
2379	 57.58	0	2546845..2547306	+	153	86609881	-	CYB_2446	-	ABC transporter, ATP-binding protein, truncation
2380	 59.48	0	2547307..2548155	-	282	86609882	purU	CYB_2447	-	formyltetrahydrofolate deformylase
2381	 58.62	0	2548220..2548480	-	86	86609883	-	CYB_2448	-	hypothetical protein
2382	 60.58	0	2548484..2548828	-	114	86609884	tatA-2	CYB_2449	-	twin-arginine translocation protein TatA
2383	 53.62	-1	2548867..2549004	-	45	86609885	-	CYB_2450	-	hypothetical protein
2384	 58.77	0	2549045..2551918	+	957	86609886	secA	CYB_2451	-	preprotein translocase subunit SecA
2385	 59.22	0	2552208..2553134	-	308	86609887	-	CYB_2452	-	NAD-dependent epimerase/dehydratase family protein
2386	 58.33	0	2553191..2553322	+	43	86609888	-	CYB_2453	-	hypothetical protein
2387	 56.95	0	2553364..2554557	-	397	86609889	-	CYB_2454	-	ISSoc1, transposase
2388	 62.37	0	2554733..2555314	+	193	86609890	-	CYB_2455	-	hypothetical protein
2389	 59.57	0	2555326..2556312	-	328	86609891	hemB	CYB_2456	-	delta-aminolevulinic acid dehydratase
2390	 61.23	0	2556338..2557312	-	324	86609892	-	CYB_2457	-	alpha/beta fold family hydrolase
2391	 46.15	-2	2557683..2557799	+	38	86609893	psbI	CYB_2458	-	photosystem II reaction center I protein I
2392	 60.48	0	2558093..2558593	-	166	86609894	-	CYB_2459	-	hypothetical protein
2393	 60.31	0	2558714..2559358	-	214	86609895	-	CYB_2460	-	BioY family protein
2394	 59.84	0	2559382..2560230	+	282	86609896	-	CYB_2462	-	inositol monophosphatase family protein
2395	 58.62	0	2560215..2560835	-	206	86609897	-	CYB_2461	-	hypothetical protein
2396	 60.61	0	2561082..2561180	-	32	86609898	-	CYB_2463	-	hypothetical protein
2397	 61.54	0	2561278..2562057	+	259	86609899	-	CYB_2464	-	TatD family hydrolase
2398	 61.64	0	2562273..2564777	+	834	86609900	-	CYB_2465	-	sensor histidine kinase
2399	 60.75	0	2564782..2565153	+	123	86609901	-	CYB_2466	-	hypothetical protein
2400	 58.64	0	2565177..2565338	-	53	86609902	-	CYB_2467	-	hypothetical protein
2401	 56.20	0	2565690..2566883	+	397	86609903	-	CYB_2468	-	ISSoc1, transposase
2402	 54.98	0	2566904..2567194	+	96	86609904	-	CYB_2469	-	hypothetical protein
2403	 56.41	0	2567349..2567933	+	194	86609905	-	CYB_2470	-	hypothetical protein
2404	 59.41	0	2568126..2569874	-	582	86609906	-	CYB_2471	-	sensor histidine kinase
2405	 58.56	0	2570300..2570743	+	147	86609907	-	CYB_2472	-	hypothetical protein
2406	 44.71	-2	2571006..2571383	+	125	86609908	-	CYB_2474	-	ISSoc13, transposase orfA
2407	 43.38	-2	2571341..2571748	+	135	86609909	-	CYB_2475	-	ISSoc13, transposase orfB
2408	 60.23	0	2571799..2572497	-	232	86609910	-	CYB_2476	-	hypothetical protein
2409	 57.80	0	2572676..2574028	+	450	86609911	ugpB	CYB_2477	-	glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate binding protein
2410	 57.36	0	2574290..2575342	+	350	86609912	upgA	CYB_2478	-	glycerol-3-phosphate ABC transporter, permease protein
2411	 62.26	0	2575434..2575955	+	173	86609913	-	CYB_2479	-	pentapeptide repeat-containing protein
2412	 60.39	0	2576049..2577467	+	472	86609914	gnd	CYB_2481	-	6-phosphogluconate dehydrogenase, decarboxylating
2413	 63.39	+1	2577464..2578957	-	497	86609915	nadB	CYB_2480	-	L-aspartate oxidase
2414	 57.94	0	2578987..2580075	-	362	86609916	nadA	CYB_2482	-	quinolinate synthetase
2415	 62.24	0	2580274..2581131	-	285	86609917	nadC	CYB_2483	-	nicotinate-nucleotide pyrophosphorylase
2416	 52.71	-1	2581306..2582079	+	257	86609918	-	CYB_2484	-	ISSoc11, transposase orfA
2417	 56.06	0	2582271..2582534	+	87	86609919	-	CYB_2485	-	ISSoc11, transposase orfB
2418	 62.95	+1	2582597..2583430	+	277	86609920	-	CYB_2486	-	hypothetical protein
2419	 60.46	0	2583459..2583764	+	101	86609921	-	CYB_2487	-	hypothetical protein
2420	 63.53	+1	2583792..2584970	+	392	86609922	-	CYB_2488	-	TPR repeat-containing protein
2421	 55.90	0	2585421..2586302	+	293	86609923	-	CYB_2489	-	RNA polymerase sigma factor SigF
2422	 60.10	0	2586670..2587263	+	197	86609924	-	CYB_2491	-	hypothetical protein
2423	 59.37	0	2587260..2587766	-	168	86609925	-	CYB_2490	-	hypothetical protein
2424	 59.57	0	2588130..2589158	+	342	86609926	mreB	CYB_2492	-	rod shape-determining protein
2425	 61.89	0	2589226..2589978	+	250	86609927	mreC	CYB_2493	-	rod shape-determining protein
2426	 57.05	0	2589956..2590600	+	214	86609928	mreD	CYB_2494	-	rod shape-determining protein MreD
2427	 53.47	-1	2590700..2590843	+	47	86609929	-	CYB_2495	-	hypothetical protein
2428	 54.82	0	2590989..2591216	+	75	86609930	-	CYB_2496	-	iron-sulfur cluster-binding protein
2429	 61.61	0	2591415..2591948	-	177	86609931	-	CYB_2497	-	hypothetical protein
2430	 61.39	0	2592797..2593801	-	334	86609932	cobD-2	CYB_2498	-	cobalamin biosynthesis protein CobD
2431	 60.53	0	2593815..2594270	-	151	86609933	-	CYB_2499	-	transcriptional regulator, putative
2432	 62.22	0	2594549..2595538	+	329	86609934	-	CYB_2500	-	tetrapyrrole methylase family protein
2433	 62.39	0	2595567..2596268	+	233	86609935	-	CYB_2501	-	DNA-binding response regulator
2434	 60.18	0	2596453..2597886	-	477	86609936	atpD	CYB_2502	-	F0F1 ATP synthase subunit beta
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.