IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2287	 62.87	+1	2458112..2458453	-	113	86609791	-	CYB_2351	-	hypothetical protein
2288	 61.02	0	2458547..2459590	-	347	86609792	obgE	CYB_2352	-	GTPase ObgE
2289	 58.00	0	2459786..2460754	+	322	86609793	rpsA	CYB_2353	-	30S ribosomal protein S1
2290	 55.82	0	2461085..2461969	-	294	86609794	-	CYB_2354	-	hypothetical protein
2291	 50.00	-2	2461923..2462048	-	41	86609795	-	CYB_2355	-	hypothetical protein
2292	 59.75	0	2462024..2462992	-	322	86609796	-	CYB_2356	-	putative cobalamin biosynthesis protein CobW
2293	 58.39	0	2463159..2463617	-	152	86609797	-	CYB_2357	-	glyoxalase family protein
2294	 61.21	0	2463813..2466614	+	933	86609798	topA	CYB_2358	-	DNA topoisomerase I
2295	 61.31	0	2466704..2466871	-	55	86609799	-	CYB_2359	-	hypothetical protein
2296	 62.62	+1	2466909..2468069	-	386	86609800	-	CYB_2360	-	SpoIID/LytB domain-containing protein
2297	 51.32	-1	2468121..2469677	-	518	86609801	-	CYB_2361	-	radical SAM domain-containing protein
2298	 53.50	-1	2470005..2470361	-	118	86609802	-	CYB_2362	-	hypothetical protein
2299	 58.76	0	2470406..2470696	-	96	86609803	-	CYB_2363	-	BolA protein
2300	 53.80	-1	2470726..2471067	-	113	86609804	-	CYB_2364	-	glutaredoxin-like protein
2301	 43.82	-2	2471569..2472579	+	336	86609805	-	CYB_2365	-	anion:cation symporter (ACS) family protein
2302	 36.93	-2	2472580..2472996	+	138	86609806	arsC	CYB_2366	-	arsenate reductase
2303	 43.29	-2	2473048..2474172	-	374	86609807	-	CYB_2367	-	PKD domain-containing protein
2304	 60.16	0	2474160..2475143	-	327	86609808	tilS	CYB_2368	-	tRNA(Ile)-lysidine synthetase
2305	 58.03	0	2475197..2476366	-	389	86609809	hrcA	CYB_2369	-	heat-inducible transcription repressor
2306	 58.75	0	2476794..2477096	+	100	86609810	ureA	CYB_2370	-	urease, gamma subunit
2307	 60.00	0	2477690..2477944	+	84	86609811	-	CYB_2372	-	hypothetical protein
2308	 63.44	+1	2478040..2480457	-	805	86609812	-	CYB_2373	-	recombination and DNA strand exchange inhibitor protein
2309	 55.56	0	2480949..2481353	+	134	86609813	-	CYB_2374	-	iron-sulfur cluster-binding protein
2310	 51.80	-1	2481466..2481687	+	73	86609814	-	CYB_2375	-	hypothetical protein
2311	 56.85	0	2481716..2482051	+	111	86609815	-	CYB_2376	-	hypothetical protein
2312	 60.43	0	2482282..2482890	+	202	86609816	-	CYB_2377	-	response regulator
2313	 60.39	0	2483164..2484087	+	307	86609817	ppnK	CYB_2378	-	inorganic polyphosphate/ATP-NAD kinase
2314	 61.88	0	2484335..2484835	-	166	86609818	-	CYB_2380	-	pentapeptide repeat-containing protein
2315	 60.27	0	2484994..2485290	-	98	86609819	-	CYB_2381	-	hypothetical protein
2316	 56.32	0	2485355..2485528	-	57	86609820	-	CYB_2382	-	hypothetical protein
2317	 61.73	0	2485554..2486282	+	242	86609821	-	CYB_2383	-	hydrophobic amino acid uptake transporter ABC transporter family ATP-binding protein
2318	 63.66	+1	2486295..2487725	-	476	86609822	-	CYB_2384	-	pyruvate kinase
2319	 58.69	0	2487938..2489140	+	400	86609823	-	CYB_2385	-	YjgP/YjgQ family protein
2320	 54.60	0	2489177..2489350	+	57	86609824	-	CYB_2386	-	hypothetical protein
2321	 59.70	0	2489433..2489963	-	176	86609825	-	CYB_2387	-	TPR repeat-containing protein
2322	 57.97	0	2490127..2491011	-	294	86609826	-	CYB_2388	-	mannosyl-3-phosphoglycerate phosphatase
2323	 59.86	0	2491282..2491971	-	229	86609827	upp	CYB_2389	-	uracil phosphoribosyltransferase
2324	 59.11	0	2492130..2492354	-	74	86609828	-	CYB_2390	-	hypothetical protein
2325	 58.68	0	2492543..2493619	+	358	86609829	-	CYB_2391	-	putative secreted protein
2326	 54.09	-1	2493816..2493974	-	52	86609830	-	CYB_2392	-	hypothetical protein
2327	 64.84	+1	2494156..2495304	+	382	86609831	thiO	CYB_2393	-	glycine oxidase ThiO
2328	 59.09	0	2495292..2495489	+	65	86609832	thiS	CYB_2394	-	thiamine biosynthesis protein ThiS
2329	 65.25	+1	2495573..2496349	+	258	86609833	thiG	CYB_2395	-	thiazole synthase
2330	 61.45	0	2496372..2497004	-	210	86609834	-	CYB_2396	-	UbiE/COQ5 family methlytransferase
2331	 59.14	0	2497103..2497912	+	269	86609835	-	CYB_2397	-	hypothetical protein
2332	 58.16	0	2498044..2498184	+	46	86609836	-	CYB_2398	-	hypothetical protein
2333	 62.01	0	2498324..2499439	+	371	86609837	-	CYB_2399	-	glycosyl transferase, group 1
2334	 57.11	0	2499535..2500518	-	327	86609838	-	CYB_2400	-	ABC transporter, ATP-binding protein
2335	 58.77	0	2500651..2500764	-	37	86609839	-	CYB_2401	-	hypothetical protein
2336	 58.94	0	2500952..2501611	+	219	86609840	-	CYB_2402	-	CDP-alcohol phosphatidyltransferase family protein
2337	 61.77	0	2501738..2502595	+	285	86609841	-	CYB_2403	-	cyclopropane-fatty-acyl-phospholipid synthase family protein
2338	 59.74	0	2502643..2503263	-	206	86609842	-	CYB_2404	-	uracil-DNA glycosylase
2339	 58.66	0	2503544..2505004	+	486	86609843	-	CYB_2405	-	U62 family peptidase
2340	 56.67	0	2505025..2505474	+	149	90296803	-	CYB_2406	-	hypothetical protein
2341	 44.71	-2	2505501..2505878	+	125	86609844	-	CYB_2407	-	ISSoc13, transposase orfA
2342	 43.14	-2	2505836..2506243	+	135	86609845	-	CYB_2408	-	ISSoc13, transposase orfB
2343	 53.12	-1	2506240..2506704	+	154	90296804	-	CYB_2409	-	hypothetical protein
2344	 54.92	0	2506709..2507857	+	382	86609846	-	CYB_2410	-	ISSoc1, transposase
2345	 58.24	0	2508113..2509453	+	446	86609847	-	CYB_2411	-	tldD/pmbA family protein
2346	 62.03	0	2509469..2510266	+	265	86609848	-	CYB_2412	-	hypothetical protein
2347	 58.74	0	2510263..2510691	+	142	86609849	-	CYB_2413	-	hypothetical protein
2348	 56.17	0	2511197..2511577	-	126	86609850	-	CYB_2415	-	hypothetical protein
2349	 58.99	0	2511618..2514026	-	802	86609851	-	CYB_2416	-	putative helicase
2350	 58.41	0	2514222..2514875	+	217	86609852	trpG	CYB_2417	-	anthranilate synthase component II
2351	 63.01	+1	2514926..2515690	+	254	86609853	-	CYB_2418	-	metallo-beta-lactamase superfamily hydrolase
2352	 63.32	+1	2515695..2516261	+	188	86609854	-	CYB_2419	-	ankyrin repeat-containing protein
2353	 58.85	0	2516272..2517282	-	336	86609855	-	CYB_2420	-	deoxyhypusine synthase family protein
2354	 59.87	0	2517517..2519619	+	700	86609856	-	CYB_2421	-	sensory box histidine kinase
2355	 61.32	0	2519962..2520204	+	80	86609857	-	CYB_2422	-	hypothetical protein
2356	 62.58	+1	2520220..2520537	+	105	86609858	-	CYB_2423	-	hypothetical protein
2357	 57.51	0	2520573..2521610	-	345	86609859	-	CYB_2424	-	CBS domain-containing protein
2358	 62.19	0	2521912..2523540	-	542	86609860	panC/cmk	CYB_2425	-	bifunctional pantoate ligase/cytidylate kinase
2359	 55.26	0	2523604..2523717	-	37	86609861	petG	CYB_2426	-	cytochrome b6-f complex subunit PetG
2360	 61.68	0	2523864..2525267	+	467	86609862	menE	CYB_2428	-	O-succinylbenzoic acid--CoA ligase
2361	 59.60	0	2525264..2525857	-	197	86609863	-	CYB_2427	-	DnaJ domain-containing protein
2362	 52.92	-1	2525863..2526102	+	79	86609864	-	CYB_2429	-	hypothetical protein
2363	 55.56	0	2526099..2526854	+	251	86609865	-	CYB_2430	-	ankyrin repeat-containing protein
2364	 60.84	0	2528013..2528561	-	182	86609866	-	CYB_2431	-	hypothetical protein
2365	 57.41	0	2528662..2529633	-	323	86609867	panE-2	CYB_2432	-	2-dehydropantoate 2-reductase
2366	 60.47	0	2529685..2530233	-	182	86609868	pyrR	CYB_2433	-	pyrR bifunctional protein
2367	 60.64	0	2530394..2530924	+	176	86609869	-	CYB_2434	-	pentapeptide repeat-containing protein
2368	 57.00	0	2531009..2531722	-	237	86609870	-	CYB_2435	-	heme oxygenase
2369	 60.79	0	2532316..2535735	+	1139	86609871	rpoB	CYB_2436	-	DNA-directed RNA polymerase subunit beta
2370	 59.77	0	2535851..2537734	+	627	86609872	rpoC1	CYB_2437	-	DNA-directed RNA polymerase subunit gamma
2371	 61.00	0	2537788..2541702	+	1304	86609873	rpoC2	CYB_2438	-	DNA-directed RNA polymerase subunit beta'
2372	 63.49	+1	2541683..2542405	+	240	86609874	-	CYB_2440	-	uracil-DNA glycosylase family protein
2373	 56.97	0	2542402..2543061	-	219	86609875	-	CYB_2439	-	transcriptional activator TenA, putative
2374	 57.02	0	2543382..2544407	-	341	86609876	-	CYB_2441	-	semialdehyde dehydrogenase family protein
2375	 56.85	0	2544518..2545240	-	240	86609877	-	CYB_2442	-	hypothetical protein
2376	 58.58	0	2545444..2545752	+	102	86609878	-	CYB_2443	-	hypothetical protein
2377	 62.16	0	2545767..2546276	-	169	86609879	-	CYB_2444	-	pentapeptide repeat-containing protein
2378	 61.22	0	2546377..2546670	+	97	86609880	gvpV	CYB_2445	-	gas vesicle protein V
2379	 57.58	0	2546845..2547306	+	153	86609881	-	CYB_2446	-	ABC transporter, ATP-binding protein, truncation
2380	 59.48	0	2547307..2548155	-	282	86609882	purU	CYB_2447	-	formyltetrahydrofolate deformylase
2381	 58.62	0	2548220..2548480	-	86	86609883	-	CYB_2448	-	hypothetical protein
2382	 60.58	0	2548484..2548828	-	114	86609884	tatA-2	CYB_2449	-	twin-arginine translocation protein TatA
2383	 53.62	-1	2548867..2549004	-	45	86609885	-	CYB_2450	-	hypothetical protein
2384	 58.77	0	2549045..2551918	+	957	86609886	secA	CYB_2451	-	preprotein translocase subunit SecA
2385	 59.22	0	2552208..2553134	-	308	86609887	-	CYB_2452	-	NAD-dependent epimerase/dehydratase family protein
2386	 58.33	0	2553191..2553322	+	43	86609888	-	CYB_2453	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.