IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2234	 59.76	0	2402264..2403088	+	274	86609738	-	CYB_2297	-	alpha/beta fold family hydrolase
2235	 62.89	+1	2403206..2404264	-	352	86609739	thrC-1	CYB_2298	-	threonine synthase
2236	 63.93	+1	2404435..2406081	-	548	86609740	-	CYB_2299	-	isochorismate synthase
2237	 61.57	0	2406353..2407294	+	313	86609741	menA	CYB_2300	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2238	 62.32	0	2407449..2409242	+	597	86609742	-	CYB_2301	-	hypothetical protein
2239	 55.92	0	2409410..2410498	+	362	86609743	-	CYB_2302	-	YjgP/YjgQ permease
2240	 62.02	0	2410495..2413935	+	1146	86609744	-	CYB_2303	-	hypothetical protein
2241	 63.73	+1	2413980..2415611	-	543	86609745	-	CYB_2304	-	phosphoglucomutase
2242	 58.20	0	2415751..2417037	-	428	86609746	-	CYB_2305	-	major facilitator transporter
2243	 59.74	0	2417063..2418073	-	336	86609747	gap-3	CYB_2306	-	glyceraldehyde-3-phosphate dehydrogenase, type I
2244	 59.80	0	2418300..2418983	+	227	86609748	-	CYB_2307	-	hypothetical protein
2245	 55.42	0	2419213..2419452	+	79	86609749	-	CYB_2308	-	DNA-directed RNA polymerase subunit omega
2246	 60.59	0	2419549..2421423	-	624	86609750	-	CYB_2309	-	small conductance mechanosensitive ion channel (MscS) family protein
2247	 59.25	0	2421462..2422580	-	372	86609751	cax	CYB_2310	-	calcium/proton exchanger
2248	 59.40	0	2422796..2423566	-	256	86609752	-	CYB_2311	-	hypothetical protein
2249	 56.06	0	2423643..2423906	-	87	86609753	-	CYB_2312	-	ISSoc11, transposase orfB
2250	 53.75	-1	2424098..2424871	-	257	86609754	-	CYB_2313	-	ISSoc11, transposase orfA
2251	 58.01	0	2425230..2425610	-	126	86609755	-	CYB_2314	-	hypothetical protein
2252	 60.47	0	2426036..2426938	-	300	86609756	-	CYB_2315	-	putative cysteine synthase B
2253	 61.38	0	2427164..2428297	+	377	86609757	cobO-1	CYB_2316	-	hypothetical protein
2254	 62.13	0	2428297..2429046	+	249	86609758	-	CYB_2317	-	acyltransferase family protein
2255	 63.95	+1	2429085..2429858	+	257	86609759	-	CYB_2319	-	alpha/beta fold family hydrolase
2256	 62.81	+1	2429836..2430561	-	241	86609760	-	CYB_2318	-	haloacid dehalogenase, IA family protein
2257	 59.45	0	2430558..2431541	-	327	86609761	-	CYB_2320	-	PhoH family protein
2258	 47.71	-2	2431967..2432119	+	50	86609762	-	CYB_2321	-	hypothetical protein
2259	 57.56	0	2432097..2432645	+	182	86609763	-	CYB_2322	-	hypothetical protein
2260	 57.05	0	2433115..2433426	-	103	86609764	-	CYB_2324	-	hypothetical protein
2261	 56.94	0	2433609..2433896	-	95	86609765	-	CYB_2325	-	hypothetical protein
2262	 59.95	0	2434027..2434398	-	123	86609766	-	CYB_2326	-	hypothetical protein
2263	 60.57	0	2434458..2435588	+	376	86609767	-	CYB_2328	-	geranylgeranyl reductase family protein
2264	 58.87	0	2435565..2436077	-	170	86609768	-	CYB_2327	-	sensor histidine kinase
2265	 59.15	0	2436197..2436928	-	243	86609769	-	CYB_2329	-	OmpA family protein
2266	 57.12	0	2437164..2437823	-	219	86609770	-	CYB_2330	-	S24 family peptidase
2267	 56.22	0	2438466..2438714	+	82	86609771	-	CYB_2331	-	hypothetical protein
2268	 55.10	0	2438815..2439177	+	120	86609772	-	CYB_2332	-	NADH dehydrogenase subunit A
2269	 59.86	0	2439174..2439908	+	244	86609773	-	CYB_2333	-	NADH dehydrogenase subunit B
2270	 58.15	0	2439910..2440461	+	183	86609774	-	CYB_2334	-	NADH dehydrogenase subunit J
2271	 56.90	0	2440509..2440682	+	57	86609775	-	CYB_2335	-	hypothetical protein
2272	 60.19	0	2440723..2441973	+	416	86609776	-	CYB_2336	-	hypothetical protein
2273	 52.60	-1	2442009..2442875	-	288	86609777	-	CYB_2337	-	hypothetical protein
2274	 61.91	0	2443451..2444986	+	511	86609778	-	CYB_2338	-	glycosyl hydrolase domain-containing protein
2275	 63.67	+1	2445287..2446153	-	288	86609779	fabD	CYB_2339	-	malonyl CoA-acyl carrier protein transacylase
2276	 63.97	+1	2446158..2447159	-	333	86609780	fabH	CYB_2340	-	3-oxoacyl-(acyl-carrier-protein) synthase III
2277	 62.93	+1	2447146..2448270	-	374	86609781	plsX	CYB_2341	-	putative glycerol-3-phosphate acyltransferase PlsX
2278	 58.97	0	2448479..2450206	-	575	86609782	-	CYB_2342	-	hypothetical protein
2279	 61.45	0	2450470..2451390	+	306	86609783	trpC	CYB_2343	-	indole-3-glycerol-phosphate synthase
2280	 56.35	0	2451442..2451693	+	83	86609784	-	CYB_2344	-	hypothetical protein
2281	 62.56	+1	2451753..2451947	+	64	86609785	-	CYB_2345	-	copper metallochaperone
2282	 61.36	0	2452060..2454375	+	771	86609786	-	CYB_2346	-	copper-translocating P-type ATPase
2283	 60.82	0	2454670..2455713	+	347	86609787	cbiX	CYB_2347	-	sirohydrochlorin cobaltochelatase
2284	 58.86	0	2455814..2456710	+	298	86609788	-	CYB_2349	-	hypothetical protein
2285	 57.93	0	2456707..2457324	-	205	86609789	-	CYB_2348	-	PAP_fibrillin
2286	 60.08	0	2457380..2458093	-	237	86609790	-	CYB_2350	-	Sua5/YciO/YrdC/YwlC family protein
2287	 62.87	+1	2458112..2458453	-	113	86609791	-	CYB_2351	-	hypothetical protein
2288	 61.02	0	2458547..2459590	-	347	86609792	obgE	CYB_2352	-	GTPase ObgE
2289	 58.00	0	2459786..2460754	+	322	86609793	rpsA	CYB_2353	-	30S ribosomal protein S1
2290	 55.82	0	2461085..2461969	-	294	86609794	-	CYB_2354	-	hypothetical protein
2291	 50.00	-2	2461923..2462048	-	41	86609795	-	CYB_2355	-	hypothetical protein
2292	 59.75	0	2462024..2462992	-	322	86609796	-	CYB_2356	-	putative cobalamin biosynthesis protein CobW
2293	 58.39	0	2463159..2463617	-	152	86609797	-	CYB_2357	-	glyoxalase family protein
2294	 61.21	0	2463813..2466614	+	933	86609798	topA	CYB_2358	-	DNA topoisomerase I
2295	 61.31	0	2466704..2466871	-	55	86609799	-	CYB_2359	-	hypothetical protein
2296	 62.62	+1	2466909..2468069	-	386	86609800	-	CYB_2360	-	SpoIID/LytB domain-containing protein
2297	 51.32	-1	2468121..2469677	-	518	86609801	-	CYB_2361	-	radical SAM domain-containing protein
2298	 53.50	-1	2470005..2470361	-	118	86609802	-	CYB_2362	-	hypothetical protein
2299	 58.76	0	2470406..2470696	-	96	86609803	-	CYB_2363	-	BolA protein
2300	 53.80	-1	2470726..2471067	-	113	86609804	-	CYB_2364	-	glutaredoxin-like protein
2301	 43.82	-2	2471569..2472579	+	336	86609805	-	CYB_2365	-	anion:cation symporter (ACS) family protein
2302	 36.93	-2	2472580..2472996	+	138	86609806	arsC	CYB_2366	-	arsenate reductase
2303	 43.29	-2	2473048..2474172	-	374	86609807	-	CYB_2367	-	PKD domain-containing protein
2304	 60.16	0	2474160..2475143	-	327	86609808	tilS	CYB_2368	-	tRNA(Ile)-lysidine synthetase
2305	 58.03	0	2475197..2476366	-	389	86609809	hrcA	CYB_2369	-	heat-inducible transcription repressor
2306	 58.75	0	2476794..2477096	+	100	86609810	ureA	CYB_2370	-	urease, gamma subunit
2307	 60.00	0	2477690..2477944	+	84	86609811	-	CYB_2372	-	hypothetical protein
2308	 63.44	+1	2478040..2480457	-	805	86609812	-	CYB_2373	-	recombination and DNA strand exchange inhibitor protein
2309	 55.56	0	2480949..2481353	+	134	86609813	-	CYB_2374	-	iron-sulfur cluster-binding protein
2310	 51.80	-1	2481466..2481687	+	73	86609814	-	CYB_2375	-	hypothetical protein
2311	 56.85	0	2481716..2482051	+	111	86609815	-	CYB_2376	-	hypothetical protein
2312	 60.43	0	2482282..2482890	+	202	86609816	-	CYB_2377	-	response regulator
2313	 60.39	0	2483164..2484087	+	307	86609817	ppnK	CYB_2378	-	inorganic polyphosphate/ATP-NAD kinase
2314	 61.88	0	2484335..2484835	-	166	86609818	-	CYB_2380	-	pentapeptide repeat-containing protein
2315	 60.27	0	2484994..2485290	-	98	86609819	-	CYB_2381	-	hypothetical protein
2316	 56.32	0	2485355..2485528	-	57	86609820	-	CYB_2382	-	hypothetical protein
2317	 61.73	0	2485554..2486282	+	242	86609821	-	CYB_2383	-	hydrophobic amino acid uptake transporter ABC transporter family ATP-binding protein
2318	 63.66	+1	2486295..2487725	-	476	86609822	-	CYB_2384	-	pyruvate kinase
2319	 58.69	0	2487938..2489140	+	400	86609823	-	CYB_2385	-	YjgP/YjgQ family protein
2320	 54.60	0	2489177..2489350	+	57	86609824	-	CYB_2386	-	hypothetical protein
2321	 59.70	0	2489433..2489963	-	176	86609825	-	CYB_2387	-	TPR repeat-containing protein
2322	 57.97	0	2490127..2491011	-	294	86609826	-	CYB_2388	-	mannosyl-3-phosphoglycerate phosphatase
2323	 59.86	0	2491282..2491971	-	229	86609827	upp	CYB_2389	-	uracil phosphoribosyltransferase
2324	 59.11	0	2492130..2492354	-	74	86609828	-	CYB_2390	-	hypothetical protein
2325	 58.68	0	2492543..2493619	+	358	86609829	-	CYB_2391	-	putative secreted protein
2326	 54.09	-1	2493816..2493974	-	52	86609830	-	CYB_2392	-	hypothetical protein
2327	 64.84	+1	2494156..2495304	+	382	86609831	thiO	CYB_2393	-	glycine oxidase ThiO
2328	 59.09	0	2495292..2495489	+	65	86609832	thiS	CYB_2394	-	thiamine biosynthesis protein ThiS
2329	 65.25	+1	2495573..2496349	+	258	86609833	thiG	CYB_2395	-	thiazole synthase
2330	 61.45	0	2496372..2497004	-	210	86609834	-	CYB_2396	-	UbiE/COQ5 family methlytransferase
2331	 59.14	0	2497103..2497912	+	269	86609835	-	CYB_2397	-	hypothetical protein
2332	 58.16	0	2498044..2498184	+	46	86609836	-	CYB_2398	-	hypothetical protein
2333	 62.01	0	2498324..2499439	+	371	86609837	-	CYB_2399	-	glycosyl transferase, group 1
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.