IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2162	 57.49	0	2326545..2326958	+	137	86609666	atpC	CYB_2222	-	ATP synthase F1, epsilon subunit
2163	 55.13	0	2327106..2327495	+	129	86609667	-	CYB_2223	-	ISSoc11, transposase orfA, truncation
2164	 55.68	0	2327701..2327964	+	87	86609668	-	CYB_2224	-	ISSoc11, transposase orfB
2165	 61.20	0	2328106..2329659	-	517	86609669	-	CYB_2225	-	tranporter, outer membrane factor (OMF) family
2166	 60.17	0	2329952..2331613	+	553	86609670	-	CYB_2226	-	hypothetical protein
2167	 65.75	+1	2331655..2334060	+	801	86609671	priA	CYB_2227	-	primosome assembly protein PriA
2168	 61.02	0	2334173..2334544	+	123	86609672	-	CYB_2228	-	hypothetical protein
2169	 63.39	+1	2334541..2335089	+	182	86609673	-	CYB_2230	-	hypothetical protein
2170	 59.86	0	2335086..2336642	-	518	86609674	metG	CYB_2229	-	methionyl-tRNA synthetase
2171	 60.68	0	2336731..2338602	+	623	86609675	-	CYB_2231	-	hypothetical protein
2172	 60.48	0	2338668..2338958	+	96	86609676	-	CYB_2232	-	hypothetical protein
2173	 62.13	0	2339049..2340305	+	418	86609677	-	CYB_2233	-	hypothetical protein
2174	 63.94	+1	2340849..2342864	+	671	86609678	-	CYB_2234	-	hydantoinase/oxoprolinase family protein
2175	 58.97	0	2343336..2344115	+	259	86609679	-	CYB_2236	-	S4 domain-containing protein
2176	 56.69	0	2344165..2345076	-	303	86609680	ubiA	CYB_2237	-	tocopherol phytyltransferase
2177	 56.65	0	2345085..2345573	-	162	86609681	-	CYB_2238	-	hypothetical protein
2178	 59.30	0	2345663..2346151	-	162	86609682	-	CYB_2239	-	R3H domain-containing protein
2179	 53.51	-1	2346183..2346296	+	37	86609683	-	CYB_2240	-	hypothetical protein
2180	 57.93	0	2346624..2347814	-	396	86609684	oxaA	CYB_2241	-	putative inner membrane protein translocase component YidC
2181	 57.28	0	2348391..2348912	+	173	86609685	ppa	CYB_2243	-	inorganic pyrophosphatase
2182	 60.42	0	2348919..2350535	-	538	86609686	-	CYB_2244	-	radical SAM domain-containing protein
2183	 59.32	0	2350829..2352202	-	457	86609687	nusA	CYB_2245	-	transcription elongation factor NusA
2184	 57.96	0	2352338..2352808	-	156	86609688	-	CYB_2246	-	hypothetical protein
2185	 48.39	-2	2353021..2353113	+	30	86609689	-	CYB_2247	-	hypothetical protein
2186	 60.47	0	2353110..2353625	+	171	86609690	-	CYB_2248	-	hypothetical protein
2187	 43.14	-2	2353708..2354115	-	135	86609691	-	CYB_2249	-	ISSoc13, transposase orfB
2188	 44.71	-2	2354073..2354450	-	125	86609692	-	CYB_2250	-	ISSoc13, transposase orfA
2189	 54.40	-1	2354503..2355138	-	211	86609693	-	CYB_2251	-	UbiE/COQ5 family methlytransferase
2190	 61.46	0	2355470..2356333	-	287	86609694	-	CYB_2252	-	arginase family protein
2191	 55.87	0	2356577..2357002	+	141	86609695	psaD	CYB_2253	-	photosystem I reaction center subunit II
2192	 57.14	0	2357237..2357845	-	202	86609696	-	CYB_2254	-	anti-oxidant AhpCTSA family protein
2193	 61.05	0	2358010..2358276	+	88	86609697	-	CYB_2255	-	hypothetical protein
2194	 57.61	0	2358350..2358625	-	91	86609698	-	CYB_2256	-	hypothetical protein
2195	 60.44	0	2358884..2359927	+	347	86609699	glpX	CYB_2257	-	fructose 1,6-bisphosphatase II
2196	 60.42	0	2360255..2361550	+	431	86609700	hemA	CYB_2258	-	glutamyl-tRNA reductase
2197	 56.48	0	2361658..2361765	+	35	86609701	-	CYB_2259	-	hypothetical protein
2198	 59.79	0	2361940..2363757	+	605	86609702	typA	CYB_2260	-	GTP-binding protein TypA
2199	 62.30	0	2363788..2365941	-	717	86609703	-	CYB_2261	-	putative peptidase
2200	 63.33	+1	2366011..2367327	-	438	86609704	cinA	CYB_2262	-	competence/damage-inducible protein CinA
2201	 63.14	+1	2368188..2369462	-	424	86609705	-	CYB_2263	-	ISSoc9, transposase
2202	 56.54	0	2369616..2370020	-	134	86609706	-	CYB_2264	-	universal stress family protein
2203	 50.94	-1	2370236..2370979	-	247	86609707	-	CYB_2265	-	hypothetical protein
2204	 61.99	0	2371217..2372797	-	526	86609708	-	CYB_2266	-	PsbB/PsbC family photosystem II protein
2205	 46.67	-2	2372845..2373354	-	169	86609709	-	CYB_2267	-	flavodoxin FldA
2206	 58.36	0	2373428..2374462	-	344	86609710	-	CYB_2268	-	PsbB/PsbC family photosystem II protein
2207	 57.58	0	2374853..2376085	+	410	86609711	-	CYB_2269	-	putative iron-regulated protein A
2208	 60.33	0	2376131..2377504	+	457	86609712	-	CYB_2271	-	hypothetical protein
2209	 50.52	-1	2377501..2378175	-	224	86609713	-	CYB_2270	-	putative hydroxylase
2210	 48.33	-2	2378537..2379196	+	219	86609714	-	CYB_2273	-	hypothetical protein
2211	 44.44	-2	2379193..2379525	-	110	86609715	-	CYB_2272	-	cupin domain-containing protein
2212	 48.52	-2	2379525..2380301	-	258	86609716	-	CYB_2274	-	hypothetical protein
2213	 47.36	-2	2380544..2381206	-	220	86609717	-	CYB_2275	-	hypothetical protein
2214	 63.01	+1	2381533..2383281	+	582	86609718	mutL	CYB_2276	-	DNA mismatch repair protein
2215	 61.38	0	2383318..2384169	+	283	86609719	-	CYB_2278	-	VKORC1/thioredoxin domain-containing protein
2216	 59.54	0	2384145..2385239	-	364	86609720	-	CYB_2277	-	response regulator
2217	 61.49	0	2385306..2386193	-	295	86609721	btpA	CYB_2279	-	photosystem I biogenesis protein BtpA
2218	 61.61	0	2386225..2387370	-	381	86609722	pyrD	CYB_2280	-	dihydroorotate dehydrogenase 2
2219	 62.21	0	2387498..2388799	-	433	86609723	-	CYB_2281	-	O-antigen polymerase family protein
2220	 60.94	0	2388799..2389182	-	127	86609724	-	CYB_2282	-	ferredoxin, 2Fe-2S
2221	 56.98	0	2389380..2389823	+	147	86609725	-	CYB_2283	-	mannose-6-phosphate isomerase
2222	 60.03	0	2389874..2392255	-	793	86609726	-	CYB_2284	-	M48B family peptidase
2223	 52.57	-1	2392458..2392904	-	148	86609727	-	CYB_2285	-	FUR family transcriptional regulator
2224	 58.53	0	2393261..2393641	+	126	86609728	-	CYB_2286	-	hypothetical protein
2225	 61.54	0	2393681..2395045	+	454	86609729	-	CYB_2287	-	putative D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
2226	 59.02	0	2395303..2395812	+	169	86609730	-	CYB_2289	-	hypothetical protein
2227	 59.23	0	2395870..2396205	+	111	86609731	-	CYB_2290	-	hypothetical protein
2228	 56.00	0	2396321..2396470	+	49	86609732	-	CYB_2291	-	hypothetical protein
2229	 60.24	0	2396569..2397330	+	253	86609733	pyrH	CYB_2292	-	uridylate kinase
2230	 60.42	0	2397587..2398834	+	415	86609734	-	CYB_2293	-	hypothetical protein
2231	 57.17	0	2398846..2399319	+	157	86609735	yqeG	CYB_2294	-	HAD family phosphatase
2232	 55.56	0	2399770..2400417	+	215	86609736	-	CYB_2295	-	hypothetical protein
2233	 58.78	0	2401039..2401989	+	316	86609737	-	CYB_2296	-	LysR family transcriptional regulator
2234	 59.76	0	2402264..2403088	+	274	86609738	-	CYB_2297	-	alpha/beta fold family hydrolase
2235	 62.89	+1	2403206..2404264	-	352	86609739	thrC-1	CYB_2298	-	threonine synthase
2236	 63.93	+1	2404435..2406081	-	548	86609740	-	CYB_2299	-	isochorismate synthase
2237	 61.57	0	2406353..2407294	+	313	86609741	menA	CYB_2300	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2238	 62.32	0	2407449..2409242	+	597	86609742	-	CYB_2301	-	hypothetical protein
2239	 55.92	0	2409410..2410498	+	362	86609743	-	CYB_2302	-	YjgP/YjgQ permease
2240	 62.02	0	2410495..2413935	+	1146	86609744	-	CYB_2303	-	hypothetical protein
2241	 63.73	+1	2413980..2415611	-	543	86609745	-	CYB_2304	-	phosphoglucomutase
2242	 58.20	0	2415751..2417037	-	428	86609746	-	CYB_2305	-	major facilitator transporter
2243	 59.74	0	2417063..2418073	-	336	86609747	gap-3	CYB_2306	-	glyceraldehyde-3-phosphate dehydrogenase, type I
2244	 59.80	0	2418300..2418983	+	227	86609748	-	CYB_2307	-	hypothetical protein
2245	 55.42	0	2419213..2419452	+	79	86609749	-	CYB_2308	-	DNA-directed RNA polymerase subunit omega
2246	 60.59	0	2419549..2421423	-	624	86609750	-	CYB_2309	-	small conductance mechanosensitive ion channel (MscS) family protein
2247	 59.25	0	2421462..2422580	-	372	86609751	cax	CYB_2310	-	calcium/proton exchanger
2248	 59.40	0	2422796..2423566	-	256	86609752	-	CYB_2311	-	hypothetical protein
2249	 56.06	0	2423643..2423906	-	87	86609753	-	CYB_2312	-	ISSoc11, transposase orfB
2250	 53.75	-1	2424098..2424871	-	257	86609754	-	CYB_2313	-	ISSoc11, transposase orfA
2251	 58.01	0	2425230..2425610	-	126	86609755	-	CYB_2314	-	hypothetical protein
2252	 60.47	0	2426036..2426938	-	300	86609756	-	CYB_2315	-	putative cysteine synthase B
2253	 61.38	0	2427164..2428297	+	377	86609757	cobO-1	CYB_2316	-	hypothetical protein
2254	 62.13	0	2428297..2429046	+	249	86609758	-	CYB_2317	-	acyltransferase family protein
2255	 63.95	+1	2429085..2429858	+	257	86609759	-	CYB_2319	-	alpha/beta fold family hydrolase
2256	 62.81	+1	2429836..2430561	-	241	86609760	-	CYB_2318	-	haloacid dehalogenase, IA family protein
2257	 59.45	0	2430558..2431541	-	327	86609761	-	CYB_2320	-	PhoH family protein
2258	 47.71	-2	2431967..2432119	+	50	86609762	-	CYB_2321	-	hypothetical protein
2259	 57.56	0	2432097..2432645	+	182	86609763	-	CYB_2322	-	hypothetical protein
2260	 57.05	0	2433115..2433426	-	103	86609764	-	CYB_2324	-	hypothetical protein
2261	 56.94	0	2433609..2433896	-	95	86609765	-	CYB_2325	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.