IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
169	 58.89	0	183572..183931	-	119	86607672	-	CYB_0170	-	CpcD/allophycocyanin linker domain-containing protein
170	 60.36	0	184303..184857	+	184	86607673	-	CYB_0171	-	hypothetical protein
171	 52.33	-1	184891..186201	-	436	86607674	-	CYB_0172	-	hypothetical protein
172	 58.30	0	186762..187454	-	230	86607675	-	CYB_0174	-	DNA-binding response regulator
173	 57.62	0	187662..188435	+	257	86607676	-	CYB_0175	-	hypothetical protein
174	 61.93	0	188444..189625	-	393	86607677	-	CYB_0176	-	glycosyl transferase, group 2
175	 52.01	-1	189779..190126	+	115	86607678	-	CYB_0177	-	anti-anti-sigma factor family protein
176	 58.30	0	190206..191030	-	274	86607679	-	CYB_0178	-	TPR domain-containing protein
177	 59.01	0	191204..192235	+	343	86607680	-	CYB_0179	-	iron-sulfur cluster-binding protein
178	 60.27	0	192245..194026	-	593	86607681	sir	CYB_0180	-	sulfite reductase subunit beta
179	 55.18	0	194180..196207	-	675	86607682	-	CYB_0181	-	peroxisomal fatty acyl CoA ABC transporter transmembrane ATP-binding protein
180	 61.22	0	196291..197484	-	397	86607683	-	CYB_0182	-	hypothetical protein
181	 56.39	0	197581..198018	-	145	86607684	-	CYB_0183	-	hypothetical protein
182	 55.80	0	198055..198330	-	91	86607685	rpsO	CYB_0184	-	ribosomal protein S15
183	 62.28	0	198423..199106	+	227	86607686	-	CYB_0185	-	phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit
184	 54.32	-1	199111..199596	-	161	86607687	apcD	CYB_0186	-	allophycocyanin alpha, B subunit
185	 59.97	0	199788..201146	-	452	86607688	pilT-1	CYB_0187	-	twitching mobility protein PilT
186	 56.96	0	201389..202078	-	229	86607689	folE	CYB_0188	-	GTP cyclohydrolase I
187	 57.79	0	202191..202922	-	243	86607690	-	CYB_0189	-	short chain dehydrogenase
188	 59.48	0	203165..204388	+	407	86607691	-	CYB_0190	-	iron ABC transporter ATP-binding protein
189	 59.38	0	204872..205585	+	237	86607692	-	CYB_0191	-	NUDIX family hydrolase
190	 52.34	-1	206258..206599	+	113	86607693	trx-1	CYB_0192	-	thioredoxin
191	 54.53	0	206714..207784	+	356	86607694	-	CYB_0193	-	hypothetical protein
192	 62.54	0	207847..208548	+	233	86607695	trpF	CYB_0194	-	N-(5'-phosphoribosyl)anthranilate isomerase
193	 59.89	0	208565..209434	-	289	86607696	-	CYB_0195	-	hypothetical protein
194	 61.33	0	209503..210327	-	274	86607697	-	CYB_0196	-	RNA pseudouridine synthase family protein
195	 44.97	-2	210425..210802	+	125	86607698	-	CYB_0197	-	ISSoc13, transposase orfA
196	 42.89	-2	210760..211167	+	135	86607699	-	CYB_0198	-	ISSoc13, transposase orfB
197	 58.61	0	211182..211715	-	177	86607700	-	CYB_0199	-	hypothetical protein
198	 58.39	0	212012..212446	-	144	86607701	rbfA	CYB_0200	-	ribosome-binding factor A
199	 56.71	0	212623..212853	+	76	86607702	-	CYB_0201	-	hypothetical protein
200	 61.89	0	212976..214439	+	487	86607703	phrB-1	CYB_0202	-	deoxyribodipyrimidine photolyase
201	 42.89	-2	214454..214861	-	135	86607704	-	CYB_0203	-	ISSoc13, transposase orfB
202	 44.71	-2	214819..215196	-	125	86607705	-	CYB_0204	-	ISSoc13, transposase orfA
203	 63.88	+1	216392..217609	-	405	86607706	moeA	CYB_0206	-	molybdopterin biosynthesis protein MoeA
204	 57.30	0	218005..218367	+	120	86607707	-	CYB_0207	-	putative monovalent cation/H+ antiporter subunit C
205	 61.64	0	218360..219832	+	490	86607708	-	CYB_0208	-	putative monovalent cation/H+ antiporter subunit D
206	 55.30	0	219834..220220	+	128	86607709	-	CYB_0209	-	hypothetical protein
207	 52.78	-1	220217..220468	+	83	86607710	-	CYB_0210	-	hypothetical protein
208	 55.67	0	220488..220769	+	93	86607711	-	CYB_0211	-	hypothetical protein
209	 61.11	0	220779..221300	+	173	86607712	-	CYB_0212	-	hypothetical protein
210	 60.50	0	221297..221977	+	226	86607713	-	CYB_0214	-	putative monovalent cation/H+ antiporter subunit B
211	 60.54	0	222909..226157	+	1082	86607714	carB	CYB_0215	-	carbamoyl phosphate synthase large subunit
212	 60.23	0	226514..227569	+	351	86607715	psbA-1	CYB_0216	-	photosystem II protein D1
213	 62.83	+1	227576..229426	-	616	86607716	-	CYB_0217	-	aspartate kinase
214	 60.87	0	229471..231006	-	511	86607717	-	CYB_0218	-	M50B family peptidase
215	 58.59	0	231034..231132	-	32	86607718	-	CYB_0219	-	hypothetical protein
216	 52.87	-1	231285..231545	-	86	86607719	-	CYB_0220	-	hypothetical protein
217	 58.17	0	232121..232591	+	156	86607720	-	CYB_0221	-	hypothetical protein
218	 60.19	0	232758..233405	+	215	86607721	-	CYB_0223	-	aromatic acid decarboxylase
219	 64.96	+1	233383..233499	-	38	86607722	-	CYB_0222	-	hypothetical protein
220	 59.87	0	233532..234650	-	372	86607723	-	CYB_0224	-	alpha/beta fold family hydrolase
221	 60.93	0	234765..235391	+	208	86607724	cobH-1	CYB_0225	-	precorrin-8X methylmutase
222	 58.28	0	235398..236291	+	297	86607725	-	CYB_0226	-	hypothetical protein
223	 63.41	+1	236292..237551	+	419	86607726	cbiE/cbiT	CYB_0227	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE/T subunits
224	 56.22	0	237598..238200	-	200	86607727	-	CYB_0228	-	hypothetical protein
225	 60.83	0	238504..239223	+	239	86607728	sfsA	CYB_0229	-	sugar fermentation stimulation protein
226	 60.56	0	239321..240580	+	419	86607729	-	CYB_0230	-	hypothetical protein
227	 56.23	0	240593..241378	+	261	86607730	xth	CYB_0231	-	exodeoxyribonuclease III
228	 56.87	0	241643..242836	+	397	86607731	-	CYB_0233	-	ISSoc1, transposase
229	 57.36	0	242791..243252	-	153	86607732	-	CYB_0232	-	sigma factor, putative
230	 52.41	-1	243545..244477	+	310	86607733	-	CYB_0234	-	polyamine/opine/phosphonate ABC transporter permease
231	 60.09	0	244559..245227	+	222	86607734	msrA	CYB_0235	-	methionine-S-sulfoxide reductase
232	 60.27	0	245242..246069	-	275	86607735	cysW	CYB_0236	-	sulfate ABC transporter, permease protein CysW
233	 60.02	0	246059..246871	-	270	86607736	cysT	CYB_0237	-	sulfate ABC transporter, permease protein CysT
234	 59.96	0	246878..247921	-	347	86607737	cysA	CYB_0238	-	sulfate ABC transporter, ATP-binding protein
235	 61.29	0	248096..249100	-	334	86607738	sbp	CYB_0239	-	sulfate ABC transporter, periplasmic sulfate-binding protein
236	 62.40	0	249359..252145	-	928	86607739	-	CYB_0240	-	putative acetyl coenzyme A synthetase
237	 57.47	0	252156..254786	-	876	86607740	-	CYB_0241	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
238	 53.77	-1	254879..255289	-	136	86607741	-	CYB_0242	-	OsmC family protein
239	 51.87	-1	255472..256221	-	249	86607742	pflA	CYB_0243	-	pyruvate formate-lyase activating enzyme
240	 57.42	0	256447..256857	-	136	86607743	-	CYB_0244	-	pentapeptide repeat-containing protein
241	 60.55	0	256939..259245	-	768	86607744	pflB	CYB_0245	-	formate acetyltransferase
242	 58.70	0	259659..260738	+	359	86607745	-	CYB_0246	-	4-hydroxyphenylpyruvate dioxygenase, putative
243	 62.19	0	260889..262250	-	453	86607746	-	CYB_0247	-	ISSoc9, transposase
244	 63.63	+1	262491..264302	+	603	86607747	-	CYB_0248	-	peptide/nickel/opine uptake ABC transporter ATP-binding protein
245	 60.56	0	264506..265258	+	250	86607748	-	CYB_0249	-	DNA-binding response regulator RpaA
246	 60.95	0	265343..267475	+	710	86607749	-	CYB_0250	-	amidinotransferase family protein
247	 47.92	-2	267462..267557	+	31	86607750	-	CYB_0251	-	hypothetical protein
248	 62.20	0	267544..268326	+	260	86607751	-	CYB_0252	-	hypothetical protein
249	 61.37	0	268365..268817	-	150	86607752	-	CYB_0253	-	small heat shock protein (HSP20) family protein
250	 50.54	-1	268891..268983	+	30	86607753	-	CYB_0255	-	hypothetical protein
251	 48.31	-2	268915..269121	-	68	86607754	-	CYB_0254	-	hypothetical protein
252	 64.15	+1	269105..269263	+	52	86607755	-	CYB_0256	-	hypothetical protein
253	 60.54	0	269266..269412	+	48	86607756	-	CYB_0257	-	hypothetical protein
254	 56.62	0	269597..270751	+	384	86607757	-	CYB_0258	-	ISSoc8, transposase
255	 54.72	0	270933..275033	+	1366	86607758	-	CYB_0259	-	hypothetical protein
256	 62.62	+1	275061..276122	-	353	86607759	hisC	CYB_0260	-	histidinol-phosphate aminotransferase
257	 59.69	0	276171..276629	-	152	86607760	-	CYB_0261	-	RNA methyltransferase
258	 60.52	0	276639..278102	-	487	86607761	ffh	CYB_0262	-	signal recognition particle protein
259	 60.87	0	278269..279717	+	482	86607762	-	CYB_0263	-	lignostilbene-alpha,beta-dioxygenase, putative
260	 60.95	0	279728..279832	-	34	86607763	-	CYB_0264	-	hypothetical protein
261	 58.67	0	280292..281254	+	320	86607764	-	CYB_0265	-	hypothetical protein
262	 49.10	-2	281337..281615	+	92	86607765	-	CYB_0266	-	hypothetical protein
263	 59.38	0	281683..283410	+	575	86607766	-	CYB_0267	-	taurine ABC transporter permease protein
264	 59.75	0	283433..284806	+	457	86607767	-	CYB_0268	-	taurine ABC transporter ATP-binding protein
265	 57.76	0	284955..285965	+	336	86607768	-	CYB_0269	-	hypothetical protein
266	 60.00	0	286029..286478	-	149	86607769	ndk	CYB_0270	-	nucleoside diphosphate kinase
267	 63.54	+1	286566..287237	-	223	86607770	-	CYB_0271	-	HupE/UreJ family protein
268	 61.99	0	287288..287800	-	170	86607771	-	CYB_0272	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.