IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2096	 61.78	0	2254438..2255439	-	333	86609600	-	CYB_2153	-	Ycf48-like protein
2097	 55.56	0	2255436..2255786	-	116	86609601	-	CYB_2154	-	rubredoxin
2098	 55.47	0	2256065..2256475	+	136	86609602	-	CYB_2155	-	FHA domain-containing protein
2099	 51.85	-1	2256542..2256649	-	35	86609603	-	CYB_2156	-	hypothetical protein
2100	 60.42	0	2256715..2257467	+	250	86609604	tpiA	CYB_2157	-	triosephosphate isomerase
2101	 50.68	-1	2257472..2260273	-	933	86609605	treY	CYB_2158	-	malto-oligosyltrehalose synthase
2102	 59.79	0	2260449..2261117	+	222	86609606	-	CYB_2159	-	hypothetical protein
2103	 56.90	0	2261152..2262021	+	289	86609607	-	CYB_2160	-	M48A family peptidase
2104	 63.00	+1	2262301..2263200	+	299	86609608	-	CYB_2162	-	PfkB family kinase
2105	 59.01	0	2263194..2264918	-	574	86609609	-	CYB_2161	-	ABC transporter, permease/ATP-binding protein
2106	 58.43	0	2264955..2266970	-	671	86609610	-	CYB_2163	-	sensory box protein
2107	 58.33	0	2267646..2268005	+	119	86609611	-	CYB_2164	-	hypothetical protein
2108	 60.04	0	2268252..2269172	+	306	86609612	-	CYB_2165	-	L-lactate dehydrogenase
2109	 60.69	0	2269265..2269984	+	239	86609613	trmB	CYB_2166	-	tRNA (guanine-N(7)-)-methyltransferase
2110	 60.42	0	2270083..2271666	+	527	86609614	-	CYB_2167	-	CAAX amino terminal protease family protein
2111	 61.09	0	2271679..2272701	-	340	86609615	-	CYB_2168	-	DnaJ domain-containing protein
2112	 61.07	0	2272659..2273516	-	285	86609616	glnH	CYB_2169	-	polar amino acid ABC transporter (PAAT) family, periplasmic amino acid-binding protein
2113	 59.90	0	2273704..2274516	-	270	86609617	-	CYB_2170	-	inositol monophosphatase family protein
2114	 57.95	0	2274847..2275374	+	175	86609618	-	CYB_2171	-	FHA domain-containing protein
2115	 60.53	0	2275713..2277212	+	499	86609619	cobQ	CYB_2173	-	cobyric acid synthase
2116	 57.30	0	2277227..2278432	-	401	86609620	-	CYB_2174	-	ISSoc7, transposase
2117	 60.03	0	2278764..2280074	-	436	86609621	-	CYB_2175	-	glycolate oxidase, iron-sulfur subunit, putative
2118	 59.52	0	2280243..2282930	-	895	86609622	-	CYB_2176	-	TPR domain-containing protein
2119	 57.60	0	2282930..2284153	-	407	86609623	-	CYB_2177	-	putative methyltransferase
2120	 51.70	-1	2284389..2285123	-	244	86609624	-	CYB_2178	-	hypothetical protein
2121	 51.23	-1	2285177..2286070	-	297	86609625	-	CYB_2179	-	radical SAM domain-containing protein
2122	 62.03	0	2286473..2286817	+	114	86609626	-	CYB_2180	-	hypothetical protein
2123	 59.41	0	2286828..2288714	-	628	86609627	-	CYB_2181	-	putative long-chain-fatty-acid-CoA ligase
2124	 50.00	-2	2288805..2288972	-	55	86609628	-	CYB_2182	-	hypothetical protein
2125	 58.10	0	2289333..2290067	+	244	86609629	pcm	CYB_2184	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
2126	 53.98	-1	2290064..2290804	-	246	86609630	-	CYB_2183	-	glycerophosphoryl diester phosphodiesterase family protein
2127	 58.06	0	2291166..2291351	+	61	86609631	-	CYB_2185	-	hypothetical protein
2128	 59.96	0	2291356..2291877	-	173	86609632	-	CYB_2186	-	putative peroxiredoxin
2129	 58.85	0	2292057..2292593	-	178	86609633	-	CYB_2187	-	acetyltransferase
2130	 47.17	-2	2292824..2292982	-	52	86609634	-	CYB_2188	-	hypothetical protein
2131	 61.90	0	2293808..2294563	-	251	86609635	cobI	CYB_2189	-	precorrin-2 methyltransferase
2132	 57.00	0	2294576..2294989	-	137	86609636	-	CYB_2190	-	anti-anti-sigma factor family protein
2133	 63.92	+1	2295286..2300124	+	1612	86609637	-	CYB_2191	-	hypothetical protein
2134	 57.10	0	2300205..2300507	-	100	86609638	-	CYB_2192	-	putative molybdenum-dependent nitrogenase
2135	 57.80	0	2301168..2302700	+	510	86609639	chlB	CYB_2193	-	light-independent protochlorophyllide reductase subunit B
2136	 59.70	0	2302757..2303761	+	334	86609640	galE	CYB_2194	-	UDP-glucose 4-epimerase
2137	 61.31	0	2303823..2304158	+	111	86609641	cutA	CYB_2195	-	divalent-cation tolerance protein CutA
2138	 57.08	0	2304179..2304658	+	159	86609642	coaD	CYB_2196	-	pantetheine-phosphate adenylyltransferase
2139	 59.72	0	2304688..2305047	-	119	86609643	-	CYB_2197	-	pentapeptide repeat-containing protein
2140	 61.55	0	2305535..2306647	+	370	86609644	-	CYB_2199	-	phosphofructokinase
2141	 59.36	0	2306599..2307036	-	145	86609645	-	CYB_2198	-	hypothetical protein
2142	 58.60	0	2307179..2308195	-	338	86609646	-	CYB_2200	-	adenylate cyclase, putative
2143	 57.82	0	2308380..2308865	+	161	86609647	-	CYB_2201	-	hypothetical protein
2144	 59.06	0	2308899..2309831	+	310	86609648	ribF	CYB_2202	-	riboflavin biosynthesis protein RibF
2145	 58.18	0	2309838..2310320	-	160	86609649	moaE	CYB_2203	-	molybdopterin converting factor, subunit 2
2146	 62.45	0	2310599..2311405	-	268	86609650	cobS	CYB_2204	-	cobalamin synthase
2147	 57.35	0	2311381..2311659	-	92	86609651	-	CYB_2205	-	hypothetical protein
2148	 56.19	0	2311744..2312955	-	403	86609652	rpoD	CYB_2206	-	RNA polymerase sigma factor RpoD
2149	 59.52	0	2313238..2313363	+	41	86609653	-	CYB_2207	-	hypothetical protein
2150	 61.47	0	2313604..2317278	+	1224	86609654	metH	CYB_2208	-	methionine synthase
2151	 55.05	0	2317633..2318424	-	263	86609655	potC	CYB_2209	-	spermidine/putrescine ABC transporter, permease protein PotC
2152	 61.36	0	2318973..2319650	+	225	86609656	-	CYB_2210	-	hypothetical protein
2153	 57.74	0	2319673..2320176	-	167	86609657	apcB-2	CYB_2211	-	allophycocyanin, beta subunit
2154	 63.33	+1	2320416..2321315	-	299	86609658	truB	CYB_2212	-	tRNA pseudouridine synthase B
2155	 62.13	0	2321459..2322427	+	322	86609659	-	CYB_2213	-	hypothetical protein
2156	 57.23	0	2322455..2323450	-	331	86609660	trpS	CYB_2214	-	tryptophanyl-tRNA synthetase
2157	 58.95	0	2323574..2323858	+	94	86609661	-	CYB_2215	-	hypothetical protein
2158	 56.13	0	2324031..2324552	+	173	86609662	ycf3	CYB_2216	-	photosystem I assembly protein Ycf3
2159	 57.14	0	2324650..2324943	+	97	86609663	gatC	CYB_2217	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
2160	 61.66	0	2325600..2326238	-	212	86609664	-	CYB_2220	-	Crp/FNR family transcriptional regulator
2161	 58.14	0	2326231..2326359	-	42	86609665	-	CYB_2221	-	hypothetical protein
2162	 57.49	0	2326545..2326958	+	137	86609666	atpC	CYB_2222	-	ATP synthase F1, epsilon subunit
2163	 55.13	0	2327106..2327495	+	129	86609667	-	CYB_2223	-	ISSoc11, transposase orfA, truncation
2164	 55.68	0	2327701..2327964	+	87	86609668	-	CYB_2224	-	ISSoc11, transposase orfB
2165	 61.20	0	2328106..2329659	-	517	86609669	-	CYB_2225	-	tranporter, outer membrane factor (OMF) family
2166	 60.17	0	2329952..2331613	+	553	86609670	-	CYB_2226	-	hypothetical protein
2167	 65.75	+1	2331655..2334060	+	801	86609671	priA	CYB_2227	-	primosome assembly protein PriA
2168	 61.02	0	2334173..2334544	+	123	86609672	-	CYB_2228	-	hypothetical protein
2169	 63.39	+1	2334541..2335089	+	182	86609673	-	CYB_2230	-	hypothetical protein
2170	 59.86	0	2335086..2336642	-	518	86609674	metG	CYB_2229	-	methionyl-tRNA synthetase
2171	 60.68	0	2336731..2338602	+	623	86609675	-	CYB_2231	-	hypothetical protein
2172	 60.48	0	2338668..2338958	+	96	86609676	-	CYB_2232	-	hypothetical protein
2173	 62.13	0	2339049..2340305	+	418	86609677	-	CYB_2233	-	hypothetical protein
2174	 63.94	+1	2340849..2342864	+	671	86609678	-	CYB_2234	-	hydantoinase/oxoprolinase family protein
2175	 58.97	0	2343336..2344115	+	259	86609679	-	CYB_2236	-	S4 domain-containing protein
2176	 56.69	0	2344165..2345076	-	303	86609680	ubiA	CYB_2237	-	tocopherol phytyltransferase
2177	 56.65	0	2345085..2345573	-	162	86609681	-	CYB_2238	-	hypothetical protein
2178	 59.30	0	2345663..2346151	-	162	86609682	-	CYB_2239	-	R3H domain-containing protein
2179	 53.51	-1	2346183..2346296	+	37	86609683	-	CYB_2240	-	hypothetical protein
2180	 57.93	0	2346624..2347814	-	396	86609684	oxaA	CYB_2241	-	putative inner membrane protein translocase component YidC
2181	 57.28	0	2348391..2348912	+	173	86609685	ppa	CYB_2243	-	inorganic pyrophosphatase
2182	 60.42	0	2348919..2350535	-	538	86609686	-	CYB_2244	-	radical SAM domain-containing protein
2183	 59.32	0	2350829..2352202	-	457	86609687	nusA	CYB_2245	-	transcription elongation factor NusA
2184	 57.96	0	2352338..2352808	-	156	86609688	-	CYB_2246	-	hypothetical protein
2185	 48.39	-2	2353021..2353113	+	30	86609689	-	CYB_2247	-	hypothetical protein
2186	 60.47	0	2353110..2353625	+	171	86609690	-	CYB_2248	-	hypothetical protein
2187	 43.14	-2	2353708..2354115	-	135	86609691	-	CYB_2249	-	ISSoc13, transposase orfB
2188	 44.71	-2	2354073..2354450	-	125	86609692	-	CYB_2250	-	ISSoc13, transposase orfA
2189	 54.40	-1	2354503..2355138	-	211	86609693	-	CYB_2251	-	UbiE/COQ5 family methlytransferase
2190	 61.46	0	2355470..2356333	-	287	86609694	-	CYB_2252	-	arginase family protein
2191	 55.87	0	2356577..2357002	+	141	86609695	psaD	CYB_2253	-	photosystem I reaction center subunit II
2192	 57.14	0	2357237..2357845	-	202	86609696	-	CYB_2254	-	anti-oxidant AhpCTSA family protein
2193	 61.05	0	2358010..2358276	+	88	86609697	-	CYB_2255	-	hypothetical protein
2194	 57.61	0	2358350..2358625	-	91	86609698	-	CYB_2256	-	hypothetical protein
2195	 60.44	0	2358884..2359927	+	347	86609699	glpX	CYB_2257	-	fructose 1,6-bisphosphatase II
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.