IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2004	 55.40	0	2157387..2158043	-	218	86609508	-	CYB_2060	-	response regulator
2005	 59.07	0	2158299..2159417	+	372	86609509	-	CYB_2061	-	UbiE/COQ5 family methlytransferase
2006	 58.81	0	2159578..2160048	+	156	86609510	-	CYB_2062	-	hypothetical protein
2007	 57.68	0	2160122..2160466	+	114	86609511	-	CYB_2063	-	hypothetical protein
2008	 62.14	0	2160617..2162161	+	514	86609512	-	CYB_2064	-	major facilitator transporter
2009	 59.40	0	2162301..2163470	+	389	86609513	-	CYB_2065	-	glycosyl transferase, group 1 family protein
2010	 59.13	0	2163803..2165248	+	481	86609514	-	CYB_2066	-	GAF/SpoIIE domain-containing protein
2011	 44.71	-2	2165301..2165678	+	125	86609515	-	CYB_2067	-	ISSoc13, transposase orfA
2012	 43.14	-2	2165636..2166043	+	135	86609516	-	CYB_2068	-	ISSoc13, transposase orfB
2013	 55.25	0	2166533..2166751	+	72	86609517	-	CYB_2069	-	hypothetical protein
2014	 61.09	0	2166882..2168315	+	477	86609518	argH	CYB_2070	-	argininosuccinate lyase
2015	 56.02	0	2168361..2169515	-	384	86609519	-	CYB_2071	-	ISSoc1, transposase
2016	 62.63	+1	2169715..2170011	+	98	86609520	-	CYB_2072	-	hypothetical protein
2017	 59.51	0	2170173..2170661	+	162	86609521	-	CYB_2073	-	Mov34/MPN/PAD-1 family protein
2018	 57.80	0	2170908..2171189	+	93	86609522	-	CYB_2074	-	ThiS domain-containing protein
2019	 59.40	0	2171192..2172361	+	389	86609523	-	CYB_2075	-	hypothetical protein
2020	 60.93	0	2172472..2173725	+	417	86609524	ribAB	CYB_2077	-	riboflavin biosynthesis protein RibA
2021	 58.62	0	2173714..2174148	-	144	86609525	-	CYB_2076	-	hypothetical protein
2022	 61.69	0	2174263..2175306	-	347	86609526	-	CYB_2078	-	GntR family transcriptional regulator
2023	 58.62	0	2175462..2176580	-	372	86609527	-	CYB_2079	-	polyamine ABC transporter, ATP-binding protein
2024	 43.75	-2	2176757..2176852	+	31	86609528	-	CYB_2080	-	hypothetical protein
2025	 58.29	0	2176931..2177467	+	178	86609529	-	CYB_2081	-	DoxX family protein
2026	 60.87	0	2177548..2179722	-	724	86609530	ppk	CYB_2082	-	polyphosphate kinase
2027	 59.38	0	2179781..2180740	-	319	86609531	-	CYB_2083	-	hydrophobic amino acid ABC transporter permease
2028	 59.77	0	2180740..2181609	-	289	86609532	-	CYB_2084	-	hydrophobic amino acid ABC transporter permease
2029	 44.71	-2	2181775..2182152	+	125	86609533	-	CYB_2085	-	ISSoc13, transposase orfA
2030	 42.89	-2	2182110..2182517	+	135	86609534	-	CYB_2086	-	ISSoc13, transposase orfB
2031	 63.04	+1	2182578..2183543	+	321	86609535	-	CYB_2087	-	putative lipoprotein
2032	 64.50	+1	2183651..2185402	+	583	86609536	-	CYB_2088	-	sulfatase
2033	 57.98	0	2185415..2185909	-	164	86609537	-	CYB_2089	-	hypothetical protein
2034	 64.04	+1	2186454..2187215	+	253	86609538	fabG	CYB_2090	-	3-oxoacyl-(acyl-carrier-protein) reductase
2035	 64.23	+1	2187221..2188864	-	547	86609539	ggt	CYB_2091	-	gamma-glutamyltransferase
2036	 61.49	0	2188902..2189771	-	289	86609540	-	CYB_2092	-	HAD family hydrolase
2037	 62.54	0	2189704..2190357	-	217	86609541	-	CYB_2093	-	hypothetical protein
2038	 60.83	0	2190370..2190609	-	79	86609542	secG	CYB_2094	-	preprotein translocase subunit SecG
2039	 53.33	-1	2191281..2191415	+	44	86609543	-	CYB_2095	-	hypothetical protein
2040	 55.68	0	2191976..2192503	-	175	86609544	-	CYB_2096	-	NADPH-dependent FMN reductase
2041	 55.63	0	2192898..2193341	+	147	86609545	-	CYB_2098	-	hypothetical protein
2042	 59.25	0	2193347..2194222	-	291	86609546	nusB	CYB_2099	-	transcription antitermination factor NusB
2043	 61.76	0	2194342..2196501	-	719	86609547	-	CYB_2100	-	UvrD/Rep family helicase
2044	 59.12	0	2196513..2197373	-	286	86609548	-	CYB_2101	-	HAD family hydrolase
2045	 60.06	0	2197590..2198528	+	312	86609549	-	CYB_2102	-	hypothetical protein
2046	 60.58	0	2198611..2199366	+	251	86609550	-	CYB_2103	-	hypothetical protein
2047	 61.09	0	2199443..2200213	+	256	86609551	-	CYB_2104	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2048	 58.33	0	2200213..2200356	+	47	86609552	-	CYB_2105	-	hypothetical protein
2049	 62.55	+1	2200320..2201048	+	242	86609553	-	CYB_2106	-	HEAT repeat-containing PBS lyase
2050	 56.76	0	2201189..2201854	-	221	86609554	chlM	CYB_2107	-	Mg-protoporphyrin IX methyl transferase
2051	 56.83	0	2202025..2202522	+	165	86609555	-	CYB_2108	-	hypothetical protein
2052	 61.15	0	2202565..2203542	-	325	86609556	ddlB	CYB_2109	-	D-alanine--D-alanine ligase B
2053	 60.57	0	2203612..2204727	-	371	86609557	ftsZ	CYB_2110	-	cell division protein FtsZ
2054	 53.89	-1	2205522..2206241	-	239	86609558	-	CYB_2111	-	hypothetical protein
2055	 60.95	0	2206276..2207412	-	378	86609559	-	CYB_2112	-	UDP-N-acetylglucosamine 2-epimerase
2056	 56.03	0	2207570..2207710	-	46	86609560	-	CYB_2113	-	hypothetical protein
2057	 56.74	0	2208276..2209715	+	479	86609561	mgtE	CYB_2114	-	magnesium transporter
2058	 52.44	-1	2209866..2210111	+	81	86609562	-	CYB_2115	-	hypothetical protein
2059	 59.12	0	2210139..2210840	+	233	86609563	-	CYB_2116	-	mgtC family protein
2060	 55.28	0	2210859..2212052	-	397	86609564	-	CYB_2117	-	ISSoc1, transposase
2061	 56.73	0	2212141..2212764	-	207	86609565	-	CYB_2118	-	hypothetical protein
2062	 59.45	0	2213302..2213703	+	133	86609566	-	CYB_2119	-	hypothetical protein
2063	 54.47	0	2213985..2214230	+	81	86609567	-	CYB_2121	-	hypothetical protein
2064	 59.12	0	2214227..2214769	-	180	86609568	-	CYB_2120	-	hypothetical protein
2065	 55.35	0	2214904..2215566	-	220	86609569	-	CYB_2122	-	hypothetical protein
2066	 59.18	0	2215664..2216611	-	315	86609570	-	CYB_2123	-	nucleotidyl transferase family protein
2067	 57.64	0	2217040..2217903	+	287	86609571	-	CYB_2124	-	cystine ABC transporter, periplasmic cystine-binding protein
2068	 57.43	0	2217975..2218721	+	248	86609572	-	CYB_2125	-	cystine ABC transporter, permease protein
2069	 55.94	0	2219259..2220470	+	403	86609573	-	CYB_2126	-	ISSoc1, transposase
2070	 60.37	0	2220623..2222338	+	571	86609574	sdhA	CYB_2127	-	succinate dehydrogenase flavoprotein subunit
2071	 59.08	0	2222478..2223875	+	465	86609575	-	CYB_2128	-	beta alanine--pyruvate transaminase
2072	 62.23	0	2223909..2224652	-	247	86609576	-	CYB_2129	-	putative lipoprotein
2073	 64.04	+1	2223997..2224110	+	37	86609577	-	CYB_2130	-	hypothetical protein
2074	 61.57	0	2224919..2226547	+	542	86609578	purF	CYB_2131	-	amidophosphoribosyltransferase
2075	 60.00	0	2226600..2227124	+	174	86609579	def-1	CYB_2132	-	peptide deformylase
2076	 57.83	0	2227136..2227633	+	165	86609580	-	CYB_2133	-	hypothetical protein
2077	 58.43	0	2227567..2228805	+	412	86609581	-	CYB_2134	-	pentapeptide repeat-containing protein
2078	 60.75	0	2229594..2229965	+	123	86609582	-	CYB_2135	-	hypothetical protein
2079	 48.95	-2	2230154..2230390	+	78	86609583	gvpG	CYB_2136	-	gas vesicle protein G
2080	 55.45	0	2230498..2231103	+	201	86609584	-	CYB_2138	-	hypothetical protein
2081	 56.59	0	2231100..2231228	-	42	86609585	-	CYB_2137	-	hypothetical protein
2082	 60.66	0	2231650..2233479	+	609	86609586	-	CYB_2139	-	fibronectin-binding protein
2083	 65.10	+1	2233527..2238314	-	1595	86609587	-	CYB_2140	-	alpha-2-macroglobulin family protein
2084	 59.25	0	2238427..2239653	-	408	86609588	pilC	CYB_2141	-	type IV pilus assembly protein PilC
2085	 60.21	0	2239851..2240981	-	376	86609589	pilT-2	CYB_2142	-	twitching motility protein
2086	 59.75	0	2241125..2243206	-	693	86609590	pilB	CYB_2143	-	type IV pilus assembly protein PilB
2087	 60.13	0	2243363..2245000	-	545	86609591	-	CYB_2144	-	acetolactate synthase
2088	 61.92	0	2245179..2246231	+	350	86609592	-	CYB_2145	-	mandelate racemase/muconate lactonizing enzyme family protein
2089	 64.88	+1	2246231..2247292	+	353	86609593	-	CYB_2146	-	hypothetical protein
2090	 55.19	0	2247372..2248565	+	397	86609594	-	CYB_2147	-	ISSoc1, transposase
2091	 58.50	0	2249079..2249666	+	195	86609595	-	CYB_2148	-	hypothetical protein
2092	 60.33	0	2249862..2250650	+	262	86609596	map-1	CYB_2149	-	methionine aminopeptidase
2093	 62.77	+1	2250657..2252528	+	623	86609597	-	CYB_2150	-	chloride channel (ClC) family protein
2094	 62.91	+1	2252545..2253183	-	212	86609598	-	CYB_2151	-	base excision DNA repair protein
2095	 63.86	+1	2253304..2254407	-	367	86609599	murG	CYB_2152	-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
2096	 61.78	0	2254438..2255439	-	333	86609600	-	CYB_2153	-	Ycf48-like protein
2097	 55.56	0	2255436..2255786	-	116	86609601	-	CYB_2154	-	rubredoxin
2098	 55.47	0	2256065..2256475	+	136	86609602	-	CYB_2155	-	FHA domain-containing protein
2099	 51.85	-1	2256542..2256649	-	35	86609603	-	CYB_2156	-	hypothetical protein
2100	 60.42	0	2256715..2257467	+	250	86609604	tpiA	CYB_2157	-	triosephosphate isomerase
2101	 50.68	-1	2257472..2260273	-	933	86609605	treY	CYB_2158	-	malto-oligosyltrehalose synthase
2102	 59.79	0	2260449..2261117	+	222	86609606	-	CYB_2159	-	hypothetical protein
2103	 56.90	0	2261152..2262021	+	289	86609607	-	CYB_2160	-	M48A family peptidase
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.