IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1974	 60.07	0	2132469..2133317	+	282	86609478	-	CYB_2030	-	ABC transporter, ATP-binding protein
1975	 56.11	0	2133374..2134093	-	239	86609479	-	CYB_2031	-	DNA-binding response regulator
1976	 54.07	-1	2134563..2134943	+	126	86609480	-	CYB_2032	-	hypothetical protein
1977	 64.17	+1	2135170..2135931	+	253	86609481	-	CYB_2033	-	hypothetical protein
1978	 62.01	0	2136179..2136736	+	185	86609482	-	CYB_2034	-	hypothetical protein
1979	 61.25	0	2136745..2137446	+	233	86609483	-	CYB_2035	-	cobalt transport protein CbiM
1980	 65.46	+1	2137433..2138263	+	276	86609484	cbiQ	CYB_2036	-	cobalt ABC transporter, permease protein CbiQ
1981	 60.81	0	2138247..2139731	+	494	86609485	-	CYB_2037	-	putative tRNA modifying protein
1982	 61.65	0	2139782..2140498	+	238	86609486	rpiA	CYB_2038	-	ribose 5-phosphate isomerase A
1983	 61.43	0	2140819..2142156	+	445	86609487	murF	CYB_2039	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1984	 54.22	-1	2142259..2142483	+	74	86609488	-	CYB_2040	-	hypothetical protein
1985	 50.15	-2	2142772..2143104	+	110	86609489	-	CYB_2041	-	fasciclin domain-containing protein
1986	 53.50	-1	2143237..2143479	-	80	86609490	-	CYB_2042	-	hypothetical protein
1987	 60.47	0	2143770..2144576	+	268	86609491	cphB	CYB_2043	-	cyanophycinase
1988	 63.27	+1	2144573..2146399	+	608	86609492	menD	CYB_2045	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1989	 62.63	+1	2146323..2147387	-	354	86609493	miaA	CYB_2044	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1990	 60.20	0	2147548..2148366	+	272	86609494	-	CYB_2046	-	hypothetical protein
1991	 59.49	0	2148516..2149226	-	236	86609495	rpe	CYB_2047	-	ribulose-phosphate 3-epimerase
1992	 57.87	0	2149242..2149673	+	143	86609496	-	CYB_2049	-	hypothetical protein
1993	 60.58	0	2149332..2149643	-	103	86609497	-	CYB_2048	-	hypothetical protein
1994	 57.32	0	2149725..2150195	+	156	86609498	-	CYB_2050	-	glyoxalase family protein
1995	 62.70	+1	2150252..2151814	+	520	86609499	-	CYB_2051	-	carbohydrate kinase family protein
1996	 53.85	-1	2151852..2152631	-	259	86609500	-	CYB_2052	-	hypothetical protein
1997	 50.94	-1	2153282..2153917	-	211	86609501	-	CYB_2053	-	putative lipoprotein
1998	 53.62	-1	2154210..2154347	-	45	86609502	-	CYB_2054	-	hypothetical protein
1999	 58.03	0	2154433..2155266	-	277	86609503	-	CYB_2055	-	undecaprenol kinase, putative
2000	 59.61	0	2155498..2156064	-	188	86609504	-	CYB_2056	-	hypothetical protein
2001	 54.84	0	2156367..2156552	-	61	86609505	-	CYB_2057	-	hypothetical protein
2002	 52.38	-1	2156640..2156744	-	34	86609506	-	CYB_2058	-	hypothetical protein
2003	 57.72	0	2156695..2157387	-	230	86609507	-	CYB_2059	-	hypothetical protein
2004	 55.40	0	2157387..2158043	-	218	86609508	-	CYB_2060	-	response regulator
2005	 59.07	0	2158299..2159417	+	372	86609509	-	CYB_2061	-	UbiE/COQ5 family methlytransferase
2006	 58.81	0	2159578..2160048	+	156	86609510	-	CYB_2062	-	hypothetical protein
2007	 57.68	0	2160122..2160466	+	114	86609511	-	CYB_2063	-	hypothetical protein
2008	 62.14	0	2160617..2162161	+	514	86609512	-	CYB_2064	-	major facilitator transporter
2009	 59.40	0	2162301..2163470	+	389	86609513	-	CYB_2065	-	glycosyl transferase, group 1 family protein
2010	 59.13	0	2163803..2165248	+	481	86609514	-	CYB_2066	-	GAF/SpoIIE domain-containing protein
2011	 44.71	-2	2165301..2165678	+	125	86609515	-	CYB_2067	-	ISSoc13, transposase orfA
2012	 43.14	-2	2165636..2166043	+	135	86609516	-	CYB_2068	-	ISSoc13, transposase orfB
2013	 55.25	0	2166533..2166751	+	72	86609517	-	CYB_2069	-	hypothetical protein
2014	 61.09	0	2166882..2168315	+	477	86609518	argH	CYB_2070	-	argininosuccinate lyase
2015	 56.02	0	2168361..2169515	-	384	86609519	-	CYB_2071	-	ISSoc1, transposase
2016	 62.63	+1	2169715..2170011	+	98	86609520	-	CYB_2072	-	hypothetical protein
2017	 59.51	0	2170173..2170661	+	162	86609521	-	CYB_2073	-	Mov34/MPN/PAD-1 family protein
2018	 57.80	0	2170908..2171189	+	93	86609522	-	CYB_2074	-	ThiS domain-containing protein
2019	 59.40	0	2171192..2172361	+	389	86609523	-	CYB_2075	-	hypothetical protein
2020	 60.93	0	2172472..2173725	+	417	86609524	ribAB	CYB_2077	-	riboflavin biosynthesis protein RibA
2021	 58.62	0	2173714..2174148	-	144	86609525	-	CYB_2076	-	hypothetical protein
2022	 61.69	0	2174263..2175306	-	347	86609526	-	CYB_2078	-	GntR family transcriptional regulator
2023	 58.62	0	2175462..2176580	-	372	86609527	-	CYB_2079	-	polyamine ABC transporter, ATP-binding protein
2024	 43.75	-2	2176757..2176852	+	31	86609528	-	CYB_2080	-	hypothetical protein
2025	 58.29	0	2176931..2177467	+	178	86609529	-	CYB_2081	-	DoxX family protein
2026	 60.87	0	2177548..2179722	-	724	86609530	ppk	CYB_2082	-	polyphosphate kinase
2027	 59.38	0	2179781..2180740	-	319	86609531	-	CYB_2083	-	hydrophobic amino acid ABC transporter permease
2028	 59.77	0	2180740..2181609	-	289	86609532	-	CYB_2084	-	hydrophobic amino acid ABC transporter permease
2029	 44.71	-2	2181775..2182152	+	125	86609533	-	CYB_2085	-	ISSoc13, transposase orfA
2030	 42.89	-2	2182110..2182517	+	135	86609534	-	CYB_2086	-	ISSoc13, transposase orfB
2031	 63.04	+1	2182578..2183543	+	321	86609535	-	CYB_2087	-	putative lipoprotein
2032	 64.50	+1	2183651..2185402	+	583	86609536	-	CYB_2088	-	sulfatase
2033	 57.98	0	2185415..2185909	-	164	86609537	-	CYB_2089	-	hypothetical protein
2034	 64.04	+1	2186454..2187215	+	253	86609538	fabG	CYB_2090	-	3-oxoacyl-(acyl-carrier-protein) reductase
2035	 64.23	+1	2187221..2188864	-	547	86609539	ggt	CYB_2091	-	gamma-glutamyltransferase
2036	 61.49	0	2188902..2189771	-	289	86609540	-	CYB_2092	-	HAD family hydrolase
2037	 62.54	0	2189704..2190357	-	217	86609541	-	CYB_2093	-	hypothetical protein
2038	 60.83	0	2190370..2190609	-	79	86609542	secG	CYB_2094	-	preprotein translocase subunit SecG
2039	 53.33	-1	2191281..2191415	+	44	86609543	-	CYB_2095	-	hypothetical protein
2040	 55.68	0	2191976..2192503	-	175	86609544	-	CYB_2096	-	NADPH-dependent FMN reductase
2041	 55.63	0	2192898..2193341	+	147	86609545	-	CYB_2098	-	hypothetical protein
2042	 59.25	0	2193347..2194222	-	291	86609546	nusB	CYB_2099	-	transcription antitermination factor NusB
2043	 61.76	0	2194342..2196501	-	719	86609547	-	CYB_2100	-	UvrD/Rep family helicase
2044	 59.12	0	2196513..2197373	-	286	86609548	-	CYB_2101	-	HAD family hydrolase
2045	 60.06	0	2197590..2198528	+	312	86609549	-	CYB_2102	-	hypothetical protein
2046	 60.58	0	2198611..2199366	+	251	86609550	-	CYB_2103	-	hypothetical protein
2047	 61.09	0	2199443..2200213	+	256	86609551	-	CYB_2104	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2048	 58.33	0	2200213..2200356	+	47	86609552	-	CYB_2105	-	hypothetical protein
2049	 62.55	+1	2200320..2201048	+	242	86609553	-	CYB_2106	-	HEAT repeat-containing PBS lyase
2050	 56.76	0	2201189..2201854	-	221	86609554	chlM	CYB_2107	-	Mg-protoporphyrin IX methyl transferase
2051	 56.83	0	2202025..2202522	+	165	86609555	-	CYB_2108	-	hypothetical protein
2052	 61.15	0	2202565..2203542	-	325	86609556	ddlB	CYB_2109	-	D-alanine--D-alanine ligase B
2053	 60.57	0	2203612..2204727	-	371	86609557	ftsZ	CYB_2110	-	cell division protein FtsZ
2054	 53.89	-1	2205522..2206241	-	239	86609558	-	CYB_2111	-	hypothetical protein
2055	 60.95	0	2206276..2207412	-	378	86609559	-	CYB_2112	-	UDP-N-acetylglucosamine 2-epimerase
2056	 56.03	0	2207570..2207710	-	46	86609560	-	CYB_2113	-	hypothetical protein
2057	 56.74	0	2208276..2209715	+	479	86609561	mgtE	CYB_2114	-	magnesium transporter
2058	 52.44	-1	2209866..2210111	+	81	86609562	-	CYB_2115	-	hypothetical protein
2059	 59.12	0	2210139..2210840	+	233	86609563	-	CYB_2116	-	mgtC family protein
2060	 55.28	0	2210859..2212052	-	397	86609564	-	CYB_2117	-	ISSoc1, transposase
2061	 56.73	0	2212141..2212764	-	207	86609565	-	CYB_2118	-	hypothetical protein
2062	 59.45	0	2213302..2213703	+	133	86609566	-	CYB_2119	-	hypothetical protein
2063	 54.47	0	2213985..2214230	+	81	86609567	-	CYB_2121	-	hypothetical protein
2064	 59.12	0	2214227..2214769	-	180	86609568	-	CYB_2120	-	hypothetical protein
2065	 55.35	0	2214904..2215566	-	220	86609569	-	CYB_2122	-	hypothetical protein
2066	 59.18	0	2215664..2216611	-	315	86609570	-	CYB_2123	-	nucleotidyl transferase family protein
2067	 57.64	0	2217040..2217903	+	287	86609571	-	CYB_2124	-	cystine ABC transporter, periplasmic cystine-binding protein
2068	 57.43	0	2217975..2218721	+	248	86609572	-	CYB_2125	-	cystine ABC transporter, permease protein
2069	 55.94	0	2219259..2220470	+	403	86609573	-	CYB_2126	-	ISSoc1, transposase
2070	 60.37	0	2220623..2222338	+	571	86609574	sdhA	CYB_2127	-	succinate dehydrogenase flavoprotein subunit
2071	 59.08	0	2222478..2223875	+	465	86609575	-	CYB_2128	-	beta alanine--pyruvate transaminase
2072	 62.23	0	2223909..2224652	-	247	86609576	-	CYB_2129	-	putative lipoprotein
2073	 64.04	+1	2223997..2224110	+	37	86609577	-	CYB_2130	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.