IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1835	 58.72	0	1967405..1968298	-	297	86609339	-	CYB_1883	-	peptide/opine/nickel ABC transporter permease
1836	 56.59	0	1968295..1969296	-	333	86609340	-	CYB_1884	-	peptide/opine/nickel ABC transporter permease
1837	 56.03	0	1969281..1970906	-	541	86609341	-	CYB_1885	-	peptide/nickel/opine uptake ABC transporter periplasmic substrate-binding protein
1838	 58.68	0	1971812..1974076	+	754	86609342	metE	CYB_1886	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1839	 62.01	0	1974254..1974940	-	228	86609343	ftsE	CYB_1887	-	cell division ATP-binding protein FtsE
1840	 62.53	0	1975134..1975883	-	249	86609344	-	CYB_1888	-	WecB/TagA/CpsF family glycosyl transferase
1841	 60.06	0	1976131..1976796	+	221	86609345	-	CYB_1889	-	Tat pathway signal sequence domain-containing protein
1842	 58.74	0	1976926..1977417	+	163	86609346	-	CYB_1890	-	plastocyanin/azurin family copper binding protein
1843	 59.84	0	1977427..1977939	+	170	86609347	-	CYB_1891	-	hypothetical protein
1844	 62.88	+1	1977945..1978208	-	87	86609348	-	CYB_1892	-	S4 domain-containing protein
1845	 61.40	0	1978196..1979581	-	461	86609349	-	CYB_1893	-	aldehyde dehydrogenase family protein
1846	 61.44	0	1979708..1980988	-	426	86609350	-	CYB_1894	-	carboxylesterase
1847	 61.11	0	1981377..1982510	-	377	86609351	sasA	CYB_1895	-	adaptive-response sensory kinase
1848	 62.69	+1	1982809..1983009	-	66	86609352	-	CYB_1896	-	hypothetical protein
1849	 58.99	0	1983178..1983828	+	216	86609353	-	CYB_1898	-	ABC transporter, ATP-binding protein
1850	 61.83	0	1983819..1984997	-	392	86609354	-	CYB_1897	-	M23B family peptidase
1851	 61.20	0	1985630..1986343	+	237	86609355	eda	CYB_1899	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
1852	 58.13	0	1986369..1986860	+	163	86609356	-	CYB_1900	-	hypothetical protein
1853	 61.97	0	1986964..1987389	+	141	86609357	dgkA	CYB_1901	-	diacylglycerol kinase
1854	 60.84	0	1987414..1988340	-	308	86609358	thrB	CYB_1902	-	homoserine kinase
1855	 59.63	0	1988656..1989891	+	411	86609359	-	CYB_1903	-	arsenite-antimonite (ArsAB) efflux family protein
1856	 59.26	0	1989976..1990704	+	242	86609360	-	CYB_1904	-	short chain dehydrogenase/reductase family oxidoreductase
1857	 57.29	0	1990709..1990900	+	63	86609361	-	CYB_1906	-	hypothetical protein
1858	 60.85	0	1990897..1991085	-	62	86609362	-	CYB_1905	-	hypothetical protein
1859	 58.94	0	1991354..1991845	-	163	86609363	-	CYB_1907	-	hypothetical protein
1860	 58.31	0	1992540..1993676	+	378	86609364	-	CYB_1908	-	methylcitrate synthase
1861	 57.10	0	1993756..1994811	+	351	86609365	-	CYB_1909	-	putative permease
1862	 48.74	-2	1995167..1995601	+	144	86609366	-	CYB_1910	-	hypothetical protein
1863	 60.38	0	1995760..1997127	-	455	86609367	-	CYB_1911	-	FAD-binding protein
1864	 54.76	0	1997240..1998037	-	265	86609368	pstB-2	CYB_1912	-	phosphate ABC transporter, ATP-binding protein
1865	 57.49	0	1998108..1999001	-	297	86609369	pstA-2	CYB_1913	-	phosphate ABC transporter, permease protein PtsA
1866	 56.20	0	1999040..2000023	-	327	86609370	pstC-2	CYB_1914	-	phosphate ABC transporter, permease protein PstC
1867	 57.16	0	2000172..2001233	-	353	86609371	pstS-2	CYB_1915	-	phosphate ABC transporter, phosphate-binding protein
1868	 48.65	-2	2001342..2001452	+	36	86609372	-	CYB_1916	-	hypothetical protein
1869	 60.75	0	2001751..2002731	-	326	86609373	pyrB	CYB_1917	-	aspartate carbamoyltransferase catalytic subunit
1870	 61.65	0	2002741..2004036	-	431	86609374	purB	CYB_1918	-	adenylosuccinate lyase
1871	 51.37	-1	2004170..2004751	+	193	86609375	-	CYB_1919	-	hypothetical protein
1872	 59.20	0	2005223..2005771	+	182	86609376	-	CYB_1920	-	TPR domain-containing protein
1873	 61.34	0	2005832..2006620	-	262	86609377	lipB	CYB_1921	-	lipoyltransferase
1874	 54.21	-1	2006634..2006954	-	106	86609378	trx-3	CYB_1922	-	thioredoxin
1875	 63.51	+1	2007301..2008440	+	379	86609379	-	CYB_1924	-	hypothetical protein
1876	 61.65	0	2008418..2010232	-	604	86609380	-	CYB_1923	-	sulfate permease
1877	 61.86	0	2010229..2010810	-	193	86609381	-	CYB_1925	-	rhodanese family protein
1878	 55.98	0	2010830..2011297	-	155	86609382	-	CYB_1926	-	hypothetical protein
1879	 59.69	0	2011395..2012111	-	238	86609383	-	CYB_1927	-	metallo-beta-lactamase domain-containing protein
1880	 57.10	0	2012261..2012626	+	121	86609384	-	CYB_1928	-	ArsR family transcriptional regulator
1881	 62.13	0	2012676..2013623	-	315	86609385	-	CYB_1929	-	NAD-dependent epimerase/dehydratase family protein
1882	 61.05	0	2013648..2015054	-	468	86609386	-	CYB_1930	-	UDP-glucose dehydrogenase
1883	 61.37	0	2015190..2016095	+	301	86609387	-	CYB_1931	-	cation transporter
1884	 57.88	0	2018591..2019751	-	386	86609388	-	CYB_1932	-	Ser/Thr protein phosphatase family protein
1885	 60.22	0	2019866..2020501	+	211	86609389	upp-1	CYB_1933	-	uracil phosphoribosyltransferase
1886	 61.81	0	2020574..2025991	-	1805	86609390	-	CYB_1934	-	sensor histidine kinase/response regulator
1887	 59.89	0	2026183..2028675	-	830	86609391	-	CYB_1935	-	putative methyl-accepting chemotaxis protein
1888	 56.65	0	2028967..2029485	-	172	86609392	-	CYB_1936	-	CheW domain-containing protein
1889	 56.01	0	2029601..2029966	-	121	86609393	-	CYB_1937	-	response regulator
1890	 53.17	-1	2029963..2030340	-	125	86609394	-	CYB_1938	-	response regulator
1891	 57.22	0	2030529..2031671	-	380	86609395	-	CYB_1939	-	response regulator
1892	 61.05	0	2031905..2032189	+	94	86609396	-	CYB_1940	-	hypothetical protein
1893	 61.93	0	2032212..2033330	-	372	86609397	-	CYB_1941	-	electron transfer flavoprotein, alpha subunit/FixB family protein
1894	 60.48	0	2033503..2034327	-	274	86609398	-	CYB_1942	-	electron transfer flavoprotein, beta subunit/FixA family protein
1895	 57.80	0	2034749..2035831	-	360	86609399	-	CYB_1943	-	Tat pathway signal sequence domain-containing protein
1896	 58.15	0	2036152..2037948	+	598	86609400	argS	CYB_1944	-	arginyl-tRNA synthetase
1897	 52.19	-1	2038232..2038597	-	121	86609401	-	CYB_1945	-	hypothetical protein
1898	 61.27	0	2038635..2040356	-	573	86609402	-	CYB_1946	-	hypothetical protein
1899	 52.67	-1	2040760..2041788	+	342	86609403	-	CYB_1948	-	LysR family transcriptional regulator
1900	 61.61	0	2041670..2044123	-	817	86609404	-	CYB_1947	-	TPR repeat-containing protein
1901	 57.73	0	2044260..2045837	+	525	86609405	-	CYB_1949	-	deoxyribodipyrimidine photolyase family protein
1902	 54.70	0	2045913..2046455	+	180	86609406	nrdR	CYB_1950	-	transcriptional regulator NrdR
1903	 60.15	0	2046848..2047522	+	224	86609407	-	CYB_1951	-	hypothetical protein
1904	 52.36	-1	2054276..2054974	+	232	86609408	-	CYB_1958	-	hypothetical protein
1905	 58.65	0	2055175..2055810	-	211	86609409	-	CYB_1959	-	hypothetical protein
1906	 60.36	0	2055814..2056638	-	274	86609410	lgt-2	CYB_1960	-	prolipoprotein diacylglyceryl transferase
1907	 56.27	0	2056922..2057998	+	358	86609411	recA	CYB_1961	-	recombinase A
1908	 62.98	+1	2058015..2058827	-	270	86609412	-	CYB_1962	-	RNA methyltransferase
1909	 62.30	0	2058908..2060281	-	457	86609413	sun	CYB_1963	-	ribosomal RNA small subunit methyltransferase B
1910	 63.10	+1	2060409..2061194	+	261	86609414	hisA	CYB_1964	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
1911	 59.70	0	2061328..2062518	+	396	86609415	-	CYB_1965	-	M20D family peptidase
1912	 62.11	0	2062532..2063101	-	189	86609416	-	CYB_1966	-	hypothetical protein
1913	 52.20	-1	2063226..2064932	-	568	86609417	-	CYB_1967	-	hypothetical protein
1914	 52.86	-1	2064932..2065525	-	197	86609418	-	CYB_1968	-	hypothetical protein
1915	 51.34	-1	2065522..2066715	-	397	86609419	-	CYB_1969	-	hypothetical protein
1916	 52.76	-1	2066705..2070322	-	1205	86609420	-	CYB_1970	-	RecF/RecN/SMC domain-containing protein
1917	 59.24	0	2070304..2071596	-	430	86609421	-	CYB_1971	-	Ser/Thr protein phosphatase family protein
1918	 53.91	-1	2071777..2072670	-	297	86609422	-	CYB_1972	-	hypothetical protein
1919	 56.30	0	2072926..2073417	+	163	90296802	-	CYB_1973	-	hypothetical protein
1920	 61.77	0	2073418..2074254	-	278	86609424	-	CYB_1974	-	RNA polymerase sigma-70 domain-containing protein
1921	 59.76	0	2074481..2074726	-	81	86609425	tatA-1	CYB_1975	-	Sec-independent protein translocase protein TatA
1922	 50.39	-1	2074723..2074851	-	42	86609426	-	CYB_1976	-	hypothetical protein
1923	 61.79	0	2074827..2076425	+	532	86609427	-	CYB_1977	-	pyridine nucleotide-disulfide oxidoreductase
1924	 56.50	0	2076486..2078777	+	763	86609428	glgB	CYB_1978	-	glycogen branching enzyme
1925	 63.99	+1	2079056..2080213	-	385	86609429	-	CYB_1979	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
1926	 64.09	+1	2080408..2081415	+	335	86609430	-	CYB_1980	-	heptosyltransferase family protein
1927	 60.40	0	2081795..2082751	-	318	86609431	cysK	CYB_1982	-	cysteine synthase A
1928	 60.86	0	2082996..2084942	+	648	86609432	dxs	CYB_1983	-	1-deoxy-D-xylulose-5-phosphate synthase
1929	 60.65	0	2084956..2086035	-	359	86609433	-	CYB_1984	-	TPR repeat-containing protein
1930	 62.03	0	2086061..2087614	-	517	86609434	zwf	CYB_1985	-	glucose-6-phosphate 1-dehydrogenase
1931	 60.06	0	2087652..2088650	-	332	86609435	fbp	CYB_1986	-	fructose-1,6-bisphosphatase
1932	 62.78	+1	2089024..2090721	+	565	86609436	ilvD	CYB_1987	-	dihydroxy-acid dehydratase
1933	 59.30	0	2090888..2092936	-	682	86609437	-	CYB_1988	-	hypothetical protein
1934	 50.93	-1	2093238..2094686	-	482	86609438	-	CYB_1989	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.