IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.48   STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.62	0	64..1467	+	467	86607504	dnaA	CYB_0001	-	chromosomal replication initiation protein
2	 59.64	0	1493..2317	+	274	86607505	-	CYB_0002	-	hypothetical protein
3	 61.92	0	2443..3264	-	273	86607506	-	CYB_0003	-	hypothetical protein
4	 61.67	0	3372..5294	-	640	86607507	-	CYB_0004	-	FtsH family metalloprotease
5	 63.47	+1	5431..6306	-	291	86607508	-	CYB_0005	-	short chain dehydrogenase/reductase family oxidoreductase
6	 51.94	-1	6297..6425	+	42	86607509	-	CYB_0006	-	hypothetical protein
7	 59.86	0	6533..7120	+	195	86607510	-	CYB_0007	-	hypothetical protein
8	 62.85	+1	7143..9602	-	819	86607511	-	CYB_0008	-	type II DNA topoisomerase, A subunit
9	 52.96	-1	10813..12723	-	636	86607512	-	CYB_0009	-	drug resistance ATPase-1
10	 54.03	-1	12864..13868	-	334	86607513	-	CYB_0011	-	putative phosphonate ABC transporter, phosphonate-binding protein
11	 51.45	-1	14052..14774	-	240	86607514	-	CYB_0012	-	hypothetical protein
12	 60.04	0	15045..16448	+	467	86607515	-	CYB_0014	-	phosphoglucomutase/phosphomannomutase family protein
13	 52.25	-1	16445..16555	-	36	86607516	-	CYB_0013	-	hypothetical protein
14	 56.21	0	17327..17938	-	203	86607517	-	CYB_0015	-	putative lipoprotein
15	 55.98	0	18219..19631	+	470	86607518	-	CYB_0016	-	hypothetical protein
16	 59.02	0	19691..21247	-	518	86607519	-	CYB_0017	-	phytoene desaturase family protein
17	 54.02	-1	21294..22574	-	426	86607520	-	CYB_0018	-	ISSoc2, transposase
18	 52.53	-1	22429..23022	-	197	86607521	-	CYB_0019	-	ISSoc2, resolvase
19	 53.78	-1	23139..23720	-	193	86607522	-	CYB_0020	-	hypothetical protein
20	 60.67	0	23828..26062	-	744	86607523	psaB	CYB_0021	-	photosystem I P700 chlorophyll a apoprotein A2
21	 59.92	0	26084..28351	-	755	86607524	psaA	CYB_0022	-	photosystem I P700 chlorophyll a apoprotein A1
22	 60.50	0	28679..30397	+	572	86607525	ureC	CYB_0023	-	urease subunit alpha
23	 63.60	+1	30461..31567	+	368	86607526	-	CYB_0024	-	ABC transporter, ATP-binding protein
24	 52.19	-1	31635..32228	+	197	86607527	-	CYB_0025	-	ISSoc2, resolvase
25	 54.83	0	32083..33315	+	410	86607528	-	CYB_0026	-	ISSoc2, transposase
26	 59.84	0	33375..34634	+	419	86607529	-	CYB_0027	-	hypothetical protein
27	 60.15	0	34638..37646	-	1002	86607530	-	CYB_0028	-	sensory box histidine kinase
28	 59.66	0	37665..38306	-	213	86607531	-	CYB_0029	-	quaternary amine ABC transporter permease
29	 57.70	0	38532..39323	-	263	86607532	-	CYB_0030	-	hypothetical protein
30	 54.12	-1	39538..40023	+	161	86607533	-	CYB_0031	-	hypothetical protein
31	 55.41	0	40497..40718	-	73	86607534	-	CYB_0032	-	hypothetical protein
32	 61.72	0	40889..41899	+	336	86607535	-	CYB_0033	-	hypothetical protein
33	 62.60	+1	42092..43639	+	515	86607536	nirA	CYB_0034	-	ferredoxin-nitrite reductase
34	 59.86	0	43701..45023	+	440	86607537	nrtA	CYB_0035	-	nitrate ABC transporter, periplasmic nitrate-binding protein NrtA
35	 55.62	0	45169..46128	+	319	86607538	ntrB-1	CYB_0036	-	nitrate ABC transporter, permease protein NrtB
36	 59.79	0	46201..48192	+	663	86607539	ntrC-1	CYB_0037	-	nitrate ABC transporter, ATP-binding protein NtrC
37	 53.26	-1	48231..49073	+	280	86607540	ntrD	CYB_0038	-	nitrate ABC transporter, ATP-binding protein NtrD
38	 52.26	-1	49091..49687	+	198	86607541	-	CYB_0039	-	hypothetical protein
39	 56.51	0	49774..51909	+	711	86607542	narB	CYB_0040	-	nitrate reductase
40	 51.10	-1	51934..52434	+	166	86607543	-	CYB_0042	-	hypothetical protein
41	 55.17	0	52431..53648	-	405	86607544	-	CYB_0041	-	ISSoc1, transposase
42	 62.35	0	54109..55404	-	431	86607545	purD	CYB_0043	-	phosphoribosylamine--glycine ligase
43	 64.01	+1	55507..56598	-	363	86607546	-	CYB_0044	-	glycosyl transferase, group 2 family protein
44	 59.84	0	56766..58055	-	429	86607547	-	CYB_0045	-	HD domain-containing protein
45	 63.41	+1	58144..59217	+	357	86607548	-	CYB_0046	-	GDSL-like lipase/acylhydrolase domain-containing protein
46	 60.13	0	59247..61082	-	611	86607549	-	CYB_0047	-	metallo-beta-lactamase family protein
47	 56.79	0	61302..62222	-	306	86607550	dapA	CYB_0048	-	dihydrodipicolinate synthase
48	 59.17	0	62498..63124	+	208	86607551	-	CYB_0049	-	nitroreductase family protein
49	 63.08	+1	63176..64207	-	343	86607552	trpD	CYB_0050	-	anthranilate phosphoribosyltransferase
50	 61.88	0	64391..65770	+	459	86607553	gid	CYB_0051	-	tRNA (uracil-5-)-methyltransferase Gid
51	 43.38	-2	65862..66269	-	135	86607554	-	CYB_0052	-	ISSoc13, transposase orfB
52	 44.71	-2	66227..66604	-	125	86607555	-	CYB_0053	-	ISSoc13, transposase orfA
53	 56.44	0	66823..67761	-	312	86607556	-	CYB_0054	-	phosphotransferase family protein
54	 58.52	0	68199..68468	+	89	86607557	-	CYB_0055	-	hypothetical protein
55	 59.46	0	68551..69216	+	221	86607558	-	CYB_0056	-	guanylate kinase, putative
56	 59.26	0	69559..70017	+	152	86607559	-	CYB_0057	-	S-adenosylmethionine decarboxylase proenzyme
57	 60.17	0	70137..71075	+	312	86607560	speE	CYB_0058	-	spermidine synthase
58	 58.42	0	71168..72319	+	383	86607561	-	CYB_0060	-	putative UDP-sulfoquinovose synthase
59	 61.40	0	72316..73227	-	303	86607562	-	CYB_0059	-	histone deacetylase family protein
60	 52.65	-1	73285..73605	-	106	86607563	-	CYB_0061	-	hypothetical protein
61	 53.23	-1	74202..74573	-	123	86607564	-	CYB_0062	-	iojap-like protein
62	 57.91	0	74616..75209	-	197	86607565	-	CYB_0063	-	HD domain-containing protein
63	 56.79	0	75214..77025	-	603	86607566	lepA	CYB_0064	-	GTP-binding protein LepA
64	 47.16	-2	77357..77884	-	175	86607567	-	CYB_0065	-	hypothetical protein
65	 55.42	0	78035..79021	-	328	86607568	glyQ	CYB_0066	-	glycyl-tRNA synthetase subunit alpha
66	 58.30	0	79074..79838	-	254	86607569	-	CYB_0067	-	T1 family peptidase
67	 63.04	+1	79887..81374	-	495	86607570	-	CYB_0068	-	GTP-binding protein
68	 60.35	0	81528..81812	+	94	86607571	-	CYB_0069	-	hypothetical protein
69	 62.39	0	81871..82455	+	194	86607572	-	CYB_0070	-	WD-40-like beta propeller repeat-containing protein
70	 60.84	0	82505..83689	+	394	86607573	-	CYB_0071	-	succinyldiaminopimelate transaminase
71	 57.22	0	83850..84548	+	232	86607574	-	CYB_0072	-	hypothetical protein
72	 62.63	+1	84796..86109	+	437	86607575	hisD	CYB_0073	-	histidinol dehydrogenase
73	 53.23	-1	86288..87061	+	257	86607576	-	CYB_0074	-	ISSoc11, transposase orfA
74	 56.82	0	87267..87530	+	87	86607577	-	CYB_0075	-	ISSoc11, transposase orfB
75	 61.93	0	87777..90329	+	850	86607578	-	CYB_0076	-	hypothetical protein
76	 58.70	0	90396..90809	-	137	86607579	-	CYB_0077	-	hypothetical protein
77	 58.15	0	90876..91556	+	226	86607580	-	CYB_0078	-	RNA pseudouridine synthase family protein
78	 59.41	0	91835..93184	-	449	86607581	purA	CYB_0079	-	adenylosuccinate synthetase
79	 62.47	0	93396..94895	-	499	86607582	-	CYB_0080	-	S41 family peptidase
80	 55.58	0	95176..96330	+	384	86607583	-	CYB_0081	-	ISSoc8, transposase
81	 57.51	0	96348..98018	-	556	86607584	tig	CYB_0082	-	trigger factor
82	 57.29	0	98090..98473	-	127	86607585	-	CYB_0083	-	hypothetical protein
83	 60.40	0	98558..99610	-	350	86607586	-	CYB_0084	-	cytochrome c assembly protein
84	 63.16	+1	99710..101248	+	512	86607587	-	CYB_0085	-	hypothetical protein
85	 58.89	0	101494..102624	-	376	86607588	-	CYB_0086	-	hypothetical protein
86	 54.11	-1	102812..104029	+	405	86607589	-	CYB_0087	-	ISSoc1, transposase
87	 61.71	0	104064..105293	+	409	86607590	xseA	CYB_0088	-	exodeoxyribonuclease VII large subunit
88	 55.27	0	105274..105510	+	78	86607591	xseB	CYB_0089	-	exodeoxyribonuclease VII, small subunit
89	 62.36	0	105603..106484	+	293	86607592	folD	CYB_0090	-	FolD bifunctional protein
90	 58.72	0	107027..107731	-	234	86607593	-	CYB_0091	-	hypothetical protein
91	 59.22	0	107841..108458	-	205	86607594	-	CYB_0092	-	pyridoxamine 5'-phosphate oxidase family protein
92	 58.76	0	108515..109690	-	391	86607595	-	CYB_0093	-	acetyltransferase
93	 57.95	0	110017..110670	-	217	86607596	-	CYB_0094	-	hypothetical protein
94	 60.79	0	110944..112338	+	464	86607597	murA	CYB_0095	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
95	 62.08	0	112532..114667	+	711	86607598	-	CYB_0096	-	Slt family transglycosylase
96	 60.88	0	114811..115398	+	195	86607599	sixA	CYB_0097	-	phosphohistidine phosphatase SixA
97	 60.54	0	115467..115760	-	97	86607600	-	CYB_0098	-	hypothetical protein
98	 60.06	0	115840..116520	+	226	86607601	-	CYB_0100	-	DnaJ family protein
99	 59.08	0	116512..117381	-	289	86607602	-	CYB_0099	-	S49 family peptidase
100	 60.77	0	117452..118333	-	293	86607603	-	CYB_0101	-	hypothetical protein
58.48	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.