IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1649	 61.90	0	1769647..1770885	-	412	86609153	pgk	CYB_1693	-	phosphoglycerate kinase
1650	 60.54	0	1771093..1772511	+	472	86609154	pds	CYB_1694	-	phytoene desaturase
1651	 61.55	0	1772668..1773546	+	292	86609155	crtB	CYB_1695	-	phytoene synthase
1652	 59.93	0	1773629..1774444	+	271	86609156	-	CYB_1697	-	ABC-2 transporter, permease protein
1653	 61.73	0	1774441..1779645	-	1734	86609157	-	CYB_1696	-	DEAD-box ATP dependent DNA helicase
1654	 51.52	-1	1779761..1780156	-	131	86609158	-	CYB_1698	-	PilT domain-containing protein
1655	 58.82	0	1780159..1780362	-	67	86609159	-	CYB_1699	-	hypothetical protein
1656	 60.93	0	1780406..1784920	-	1504	86609160	-	CYB_1700	-	hypothetical protein
1657	 62.63	+1	1784956..1787850	-	964	86609161	-	CYB_1701	-	putative helicase
1658	 58.33	0	1787993..1788508	+	171	86609162	-	CYB_1702	-	trunctated cyclic nucleotide-binding protein
1659	 51.19	-1	1788505..1788672	+	55	86609163	-	CYB_1703	-	hypothetical protein
1660	 58.63	0	1788665..1789684	+	339	86609164	gap-2	CYB_1704	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1661	 59.36	0	1789719..1790279	-	186	86609165	-	CYB_1705	-	2',5' RNA ligase family protein
1662	 56.89	0	1790339..1790788	+	149	86609166	-	CYB_1707	-	ferredoxin-like protein
1663	 63.19	+1	1790757..1791389	-	210	86609167	-	CYB_1706	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1664	 59.36	0	1791477..1792229	-	250	86609168	-	CYB_1708	-	hypothetical protein
1665	 55.62	0	1792357..1792881	+	174	86609169	-	CYB_1709	-	acetyltransferase
1666	 64.21	+1	1792911..1794008	+	365	86609170	-	CYB_1710	-	oxidoreductase, FAD-binding
1667	 57.33	0	1794125..1794424	+	99	86609171	-	CYB_1711	-	hypothetical protein
1668	 57.35	0	1794624..1796243	+	539	86609172	groEL	CYB_1712	-	chaperonin GroEL
1669	 57.83	0	1796274..1796669	-	131	86609173	-	CYB_1713	-	hypothetical protein
1670	 56.52	0	1796734..1796871	+	45	86609174	-	CYB_1715	-	hypothetical protein
1671	 61.14	0	1796868..1797500	-	210	86609175	-	CYB_1714	-	S-layer domain-containing protein
1672	 58.82	0	1797699..1798208	+	169	86609176	-	CYB_1716	-	TPR domain-containing protein
1673	 52.31	-1	1798450..1798644	+	64	86609177	-	CYB_1718	-	hypothetical protein
1674	 54.11	-1	1798790..1801870	+	1026	86609178	-	CYB_1719	-	hypothetical protein
1675	 55.88	0	1801933..1802544	+	203	86609179	-	CYB_1720	-	hypothetical protein
1676	 46.40	-2	1802583..1802804	+	73	86609180	-	CYB_1721	-	hypothetical protein
1677	 54.69	0	1803090..1804283	-	397	86609181	-	CYB_1722	-	ISSoc1, transposase
1678	 43.33	-2	1804360..1804599	-	79	86609182	-	CYB_1723	-	hypothetical protein
1679	 51.88	-1	1804652..1807450	+	932	86609183	-	CYB_1724	-	hypothetical protein
1680	 40.44	-2	1807472..1807921	-	149	86609184	-	CYB_1725	-	hypothetical protein
1681	 53.13	-1	1808499..1811210	+	903	86609185	-	CYB_1727	-	SNF2 family helicase
1682	 49.59	-2	1811305..1811919	-	204	86609186	-	CYB_1728	-	hypothetical protein
1683	 47.80	-2	1812114..1812728	-	204	86609187	-	CYB_1729	-	hypothetical protein
1684	 57.91	0	1812917..1813852	+	311	86609188	-	CYB_1730	-	HEAT repeat-containing PBS lyase
1685	 60.14	0	1813907..1814779	+	290	86609189	-	CYB_1731	-	TPR domain-containing protein
1686	 62.50	0	1814789..1815340	+	183	86609190	-	CYB_1733	-	putative methyltransferase
1687	 63.61	+1	1815337..1815957	-	206	86609191	-	CYB_1732	-	hypothetical protein
1688	 58.88	0	1816003..1817544	-	513	86609192	glgA	CYB_1734	-	glycogen synthase
1689	 60.19	0	1817558..1817665	+	35	86609193	-	CYB_1735	-	hypothetical protein
1690	 60.06	0	1817800..1818858	+	352	86609194	psbD-2	CYB_1736	-	photosystem II protein D2
1691	 61.17	0	1818978..1819541	-	187	86609195	aroK	CYB_1737	-	shikimate kinase
1692	 58.69	0	1819553..1820191	-	212	86609196	ribE	CYB_1738	-	riboflavin synthase subunit alpha
1693	 52.77	-1	1820204..1821901	-	565	86609197	-	CYB_1739	-	drug resistance ATPase-1
1694	 57.81	0	1822506..1823747	-	413	86609198	-	CYB_1740	-	response regulator
1695	 59.18	0	1823994..1824728	-	244	86609199	rph	CYB_1741	-	ribonuclease PH
1696	 55.76	0	1824952..1826106	-	384	86609200	-	CYB_1742	-	ISSoc8, transposase
1697	 62.15	0	1826362..1827114	-	250	86609201	-	CYB_1743	-	hypothetical protein
1698	 63.85	+1	1827309..1828232	+	307	86609202	speB	CYB_1744	-	agmatinase
1699	 59.25	0	1828305..1829153	+	282	86609203	-	CYB_1745	-	stomatin/podocin/band 7/nephrosis.2/SPFH (stomatin) family protein
1700	 57.75	0	1829257..1829940	+	227	86609204	-	CYB_1746	-	hypothetical protein
1701	 61.63	0	1830519..1831094	+	191	86609205	-	CYB_1747	-	hypothetical protein
1702	 63.68	+1	1831100..1831903	+	267	86609206	proC	CYB_1749	-	pyrroline-5-carboxylate reductase
1703	 62.89	+1	1831900..1833117	-	405	86609207	-	CYB_1748	-	pyridine nucleotide-disulfide oxidoreductase
1704	 62.77	+1	1833258..1833770	-	170	86609208	-	CYB_1750	-	hypothetical protein
1705	 63.08	+1	1833865..1835145	+	426	86609209	ahcY	CYB_1751	-	S-adenosyl-L-homocysteine hydrolase
1706	 62.59	+1	1835742..1836944	-	400	86609210	argG	CYB_1752	-	argininosuccinate synthase
1707	 58.50	0	1836932..1837078	+	48	86609211	-	CYB_1753	-	hypothetical protein
1708	 63.56	+1	1837181..1839013	+	610	86609212	-	CYB_1754	-	hypothetical protein
1709	 43.63	-2	1839105..1839512	-	135	86609213	-	CYB_1755	-	ISSoc13, transposase orfB
1710	 44.71	-2	1839470..1839847	-	125	86609214	-	CYB_1756	-	ISSoc13, transposase orfA
1711	 60.58	0	1839900..1840901	-	333	86609215	secF	CYB_1757	-	preprotein translocase subunit SecF
1712	 59.91	0	1840898..1842244	-	448	86609216	secD	CYB_1758	-	preprotein translocase subunit SecD
1713	 54.52	0	1842323..1843549	-	408	86609217	-	CYB_1759	-	ISSoc1, transposase
1714	 58.48	0	1843776..1844789	+	337	86609218	-	CYB_1760	-	hypothetical protein
1715	 58.64	0	1844797..1846017	-	406	86609219	chlP	CYB_1761	-	geranylgeranyl reductase
1716	 61.98	0	1846142..1847293	-	383	86609220	-	CYB_1762	-	polyamine ABC transporter, periplasmic polyamine-binding protein
1717	 59.78	0	1847265..1847729	-	154	86609221	-	CYB_1763	-	hypothetical protein
1718	 61.16	0	1847726..1849105	-	459	86609222	-	CYB_1764	-	hypothetical protein
1719	 56.98	0	1849211..1850191	-	326	86609223	-	CYB_1765	-	dehydrogenase, E1 component, beta subunit, putative
1720	 61.09	0	1850375..1851397	+	340	86609224	pdxA	CYB_1766	-	4-hydroxythreonine-4-phosphate dehydrogenase
1721	 57.97	0	1851488..1852603	+	371	86609225	-	CYB_1767	-	aldo/keto reductase family oxidoreductase
1722	 61.34	0	1852691..1853497	+	268	86609226	-	CYB_1768	-	hypothetical protein
1723	 55.41	0	1853533..1853763	-	76	86609227	-	CYB_1769	-	hypothetical protein
1724	 45.19	-2	1853741..1853875	+	44	86609228	-	CYB_1770	-	hypothetical protein
1725	 60.15	0	1854118..1855896	+	592	86609229	-	CYB_1772	-	flavodoxin
1726	 49.74	-2	1855874..1856446	-	190	86609230	-	CYB_1771	-	hypothetical protein
1727	 54.73	0	1856514..1860257	-	1247	86609231	-	CYB_1773	-	sensory box histidine kinase
1728	 56.80	0	1860440..1861027	-	195	86609232	-	CYB_1774	-	hypothetical protein
1729	 48.46	-2	1861121..1861735	-	204	86609233	-	CYB_1775	-	hypothetical protein
1730	 58.58	0	1861856..1863166	-	436	86609234	-	CYB_1776	-	peptidase inhibitor
1731	 64.41	+1	1863188..1863364	+	58	86609235	-	CYB_1777	-	hypothetical protein
1732	 59.96	0	1863392..1863958	+	188	86609236	-	CYB_1778	-	hypothetical protein
1733	 61.82	0	1864408..1865727	+	439	86609237	-	CYB_1779	-	bifunctional sterol desaturase/short chain dehydrogenase
1734	 61.83	0	1865923..1866687	+	254	86609238	-	CYB_1780	-	putative lipoprotein
1735	 53.98	-1	1866870..1867760	+	296	86609239	thyX	CYB_1781	-	thymidylate synthase, flavin-dependent
1736	 49.21	-2	1867814..1868575	+	253	86609240	-	CYB_1782	-	hypothetical protein
1737	 59.10	0	1868929..1870488	+	519	86609241	-	CYB_1783	-	sugar transferase family protein
1738	 60.08	0	1870499..1871242	+	247	86609242	purC	CYB_1784	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1739	 59.13	0	1871515..1872390	+	291	86609243	-	CYB_1785	-	hypothetical protein
1740	 61.20	0	1873483..1874415	-	310	86609244	hemC	CYB_1786	-	porphobilinogen deaminase
1741	 51.30	-1	1874748..1875209	+	153	86609245	-	CYB_1787	-	hypothetical protein
1742	 61.20	0	1875397..1876878	+	493	86609246	-	CYB_1788	-	glycosyl transferase, group 2 family protein
1743	 60.12	0	1876942..1877934	+	330	86609247	ilvC	CYB_1789	-	ketol-acid reductoisomerase
1744	 60.86	0	1877968..1879275	+	435	86609248	serS	CYB_1790	-	seryl-tRNA synthetase
1745	 60.49	0	1879609..1880013	-	134	86609249	-	CYB_1791	-	hypothetical protein
1746	 59.83	0	1880252..1880968	-	238	86609250	-	CYB_1792	-	microcompartments family protein
1747	 62.12	0	1881001..1881660	-	219	86609251	-	CYB_1793	-	hypothetical protein
1748	 62.23	0	1881751..1883712	-	653	86609252	ccmM	CYB_1794	-	carbon dioxide concentrating mechanism protein CcmM
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.