IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1558	 55.67	0	1672893..1673192	+	99	86609062	-	CYB_1598	-	ferredoxin, 2Fe-2S
1559	 54.79	0	1673580..1674017	+	145	86609063	-	CYB_1599	-	hypothetical protein
1560	 57.55	0	1674115..1674432	+	105	86609064	-	CYB_1600	-	hypothetical protein
1561	 57.50	0	1674492..1675178	+	228	86609065	-	CYB_1601	-	hypothetical protein
1562	 54.56	0	1675242..1675745	+	167	86609066	-	CYB_1603	-	hypothetical protein
1563	 60.87	0	1675853..1676128	+	91	86609067	-	CYB_1604	-	hypothetical protein
1564	 63.14	+1	1676295..1677827	+	510	86609068	gatA	CYB_1605	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1565	 56.83	0	1677845..1678159	-	104	86609069	psbW	CYB_1606	-	photosystem II reaction center protein Psb28
1566	 66.84	+2	1678191..1679330	-	379	86609070	-	CYB_1607	-	glycerate kinase
1567	 59.41	0	1679429..1679800	-	123	86609071	-	CYB_1608	-	hypothetical protein
1568	 62.59	+1	1679987..1682515	-	842	86609072	gyrA	CYB_1609	-	DNA gyrase subunit A
1569	 53.50	-1	1682949..1683191	+	80	86609073	-	CYB_1610	-	hypothetical protein
1570	 60.57	0	1683282..1684988	+	568	86609074	-	CYB_1611	-	SulP family sulfate permease
1571	 61.07	0	1685058..1685897	+	279	86609075	-	CYB_1612	-	hypothetical protein
1572	 56.42	0	1686156..1687736	-	526	86609076	-	CYB_1613	-	putative S-layer protein
1573	 61.99	0	1687951..1688121	-	56	86609077	-	CYB_1614	-	hypothetical protein
1574	 62.80	+1	1688132..1689295	-	387	86609078	-	CYB_1616	-	inositol-5-monophosphate dehydrogenase
1575	 60.81	0	1689397..1690182	-	261	86609079	-	CYB_1617	-	hypothetical protein
1576	 59.33	0	1690530..1692164	-	544	86609080	groEL	CYB_1618	-	chaperonin GroEL
1577	 56.73	0	1692255..1692566	-	103	86609081	groES	CYB_1619	-	co-chaperonin GroES
1578	 62.04	0	1692811..1693674	+	287	86609082	-	CYB_1620	-	PhzF family phenazine biosynthesis protein
1579	 61.59	0	1693688..1694671	-	327	86609083	petA	CYB_1621	-	apocytochrome f
1580	 62.43	0	1694794..1695312	-	172	86609084	petC	CYB_1622	-	cytochrome b6-f complex iron-sulfur subunit
1581	 60.06	0	1695496..1695813	+	105	86609085	-	CYB_1623	-	hypothetical protein
1582	 59.06	0	1695937..1697277	-	446	86609086	-	CYB_1624	-	hypothetical protein
1583	 61.60	0	1697422..1697934	-	170	86609087	-	CYB_1625	-	hypothetical protein
1584	 58.38	0	1697951..1698505	-	184	86609088	-	CYB_1626	-	hypothetical protein
1585	 53.66	-1	1698495..1698617	+	40	86609089	-	CYB_1627	-	hypothetical protein
1586	 62.36	0	1698660..1699937	-	425	86609090	prc-2	CYB_1628	-	C-terminal processing peptidase
1587	 56.09	0	1700084..1700773	+	229	86609091	petB	CYB_1629	-	cytochrome b6
1588	 54.39	-1	1700872..1701384	+	170	86609092	petD	CYB_1630	-	cytochrome b6-f complex subunit IV
1589	 61.20	0	1701592..1702707	+	371	86609093	leuB	CYB_1631	-	3-isopropylmalate dehydrogenase
1590	 60.04	0	1702789..1703874	-	361	86609094	-	CYB_1632	-	dihydrouridine synthase family protein
1591	 56.94	0	1703891..1704106	-	71	86609095	rpsR	CYB_1633	-	30S ribosomal protein S18
1592	 55.38	0	1704136..1704330	-	64	86609096	rpmG	CYB_1634	-	50S ribosomal protein L33
1593	 59.84	0	1704422..1705183	-	253	86609097	-	CYB_1635	-	RDD domain-containing protein
1594	 63.02	+1	1705315..1706301	-	328	86609098	rnz	CYB_1636	-	ribonuclease Z
1595	 53.01	-1	1706249..1706431	+	60	86609099	-	CYB_1637	-	hypothetical protein
1596	 56.02	0	1706412..1706768	+	118	86609100	-	CYB_1638	-	iron-sulfur cluster assembly accessory protein
1597	 60.23	0	1706804..1708045	-	413	86609101	-	CYB_1639	-	sensor histidine kinase/response regulator
1598	 59.99	0	1708080..1712408	-	1442	86609102	-	CYB_1640	-	sensory box histidine kinase/response regulator
1599	 61.47	0	1712650..1715439	-	929	86609103	-	CYB_1641	-	calcium-translocating P-type ATPase, PMCA-type
1600	 61.74	0	1715961..1717340	+	459	86609104	lysA	CYB_1644	-	diaminopimelate decarboxylase
1601	 58.12	0	1717559..1718482	+	307	86609105	-	CYB_1645	-	hypothetical protein
1602	 60.64	0	1718488..1719234	+	248	86609106	uppS	CYB_1646	-	undecaprenyl diphosphate synthase
1603	 61.67	0	1719273..1719872	-	199	86609107	-	CYB_1647	-	hypothetical protein
1604	 64.91	+1	1719941..1721137	-	398	86609108	-	CYB_1648	-	aminotransferase, class V
1605	 58.20	0	1721267..1722577	-	436	86609109	-	CYB_1649	-	putative rod shape-determining protein RodA
1606	 61.87	0	1722668..1727377	-	1569	86609110	-	CYB_1650	-	TM2 domain-containing protein
1607	 60.10	0	1727509..1729032	-	507	86609111	-	CYB_1651	-	sugar ABC transporter, ATP-binding protein
1608	 58.46	0	1729152..1730150	+	332	86609112	prs	CYB_1652	-	ribose-phosphate pyrophosphokinase
1609	 54.55	0	1730309..1733377	+	1022	86609113	-	CYB_1653	-	sensory box histidine kinase
1610	 57.67	0	1733374..1734384	+	336	86609114	-	CYB_1654	-	response regulator
1611	 61.18	0	1734385..1735551	-	388	86609115	-	CYB_1655	-	rare lipoprotein A family protein
1612	 63.29	+1	1735696..1736760	+	354	86609116	purM	CYB_1656	-	phosphoribosylformylglycinamidine cyclo-ligase
1613	 63.11	+1	1736976..1737986	+	336	86609117	-	CYB_1657	-	ABC transporter, ATP-binding protein
1614	 56.87	0	1737983..1738768	+	261	86609118	-	CYB_1658	-	hypothetical protein
1615	 63.28	+1	1738816..1740378	+	520	86609119	-	CYB_1659	-	hypothetical protein
1616	 61.08	0	1740397..1741881	+	494	86609120	-	CYB_1660	-	putative lipoprotein
1617	 60.65	0	1741886..1742533	-	215	86609121	-	CYB_1661	-	universal stress protein
1618	 62.75	+1	1742629..1743189	-	186	86609122	-	CYB_1662	-	zinc carboxypeptidase family protein
1619	 58.40	0	1743355..1743753	-	132	86609123	-	CYB_1663	-	single-strand binding family protein
1620	 54.98	0	1743827..1744117	-	96	86609124	rpsF	CYB_1664	-	ribosomal protein S6
1621	 54.30	-1	1744312..1744602	+	96	86609125	acpP	CYB_1665	-	acyl carrier protein
1622	 62.69	+1	1744648..1745928	+	426	86609126	fabF	CYB_1666	-	3-oxoacyl-(acyl carrier protein) synthase II
1623	 56.67	0	1745941..1746210	+	89	86609127	-	CYB_1667	-	hypothetical protein
1624	 61.87	0	1746272..1747084	+	270	86609128	-	CYB_1669	-	hydrolase, haloacid dehalogenase family protein
1625	 62.34	0	1747081..1748259	-	392	86609129	queA	CYB_1668	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1626	 58.25	0	1748343..1748924	-	193	86609130	dcd	CYB_1670	-	deoxycytidine triphosphate deaminase
1627	 60.61	0	1749048..1749641	-	197	86609131	-	CYB_1671	-	putative cob(I)alamin adenosyltransferase
1628	 43.63	-2	1750146..1750553	-	135	86609132	-	CYB_1672	-	ISSoc13, transposase orfB
1629	 44.97	-2	1750511..1750888	-	125	86609133	-	CYB_1673	-	ISSoc13, transposase orfA
1630	 50.00	-2	1751409..1751534	-	41	86609134	-	CYB_1674	-	hypothetical protein
1631	 60.97	0	1751647..1752858	-	403	86609135	-	CYB_1675	-	putative lipoprotein
1632	 53.12	-1	1752902..1752997	-	31	86609136	-	CYB_1676	-	hypothetical protein
1633	 62.24	0	1753189..1754115	+	308	86609137	-	CYB_1677	-	D-isomer specific 2-hydroxyacid dehydrogenase
1634	 59.85	0	1754173..1755243	-	356	86609138	-	CYB_1678	-	isopropylmalate/isohomocitrate dehydrogenase family protein
1635	 61.31	0	1755423..1756076	-	217	86609139	-	CYB_1679	-	hypothetical protein
1636	 60.35	0	1756309..1757748	-	479	86609140	gltX	CYB_1680	-	glutamyl-tRNA synthetase
1637	 56.14	0	1757869..1757982	-	37	86609141	-	CYB_1681	-	hypothetical protein
1638	 58.12	0	1757983..1758333	+	116	86609142	-	CYB_1682	-	hypothetical protein
1639	 61.95	0	1758620..1759954	-	444	86609143	miaB	CYB_1683	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1640	 62.07	0	1760072..1760506	+	144	86609144	-	CYB_1684	-	BlaI/MecI/CopY family transcriptional regulator
1641	 63.83	+1	1760503..1761384	+	293	86609145	-	CYB_1685	-	hypothetical protein
1642	 58.89	0	1761444..1762382	+	312	86609146	argB	CYB_1687	-	acetylglutamate kinase
1643	 59.26	0	1762379..1763188	-	269	86609147	-	CYB_1686	-	hypothetical protein
1644	 55.41	0	1763451..1764623	+	390	86609148	-	CYB_1688	-	ISSoc1, transposase
1645	 61.10	0	1764692..1766560	+	622	86609149	-	CYB_1689	-	ABC transporter, permease/ATP-binding protein
1646	 56.70	0	1766988..1767338	+	116	86609150	-	CYB_1690	-	hypothetical protein
1647	 59.06	0	1767537..1769048	+	503	86609151	-	CYB_1691	-	AAA family ATPase
1648	 55.56	0	1769173..1769523	+	116	86609152	-	CYB_1692	-	hypothetical protein
1649	 61.90	0	1769647..1770885	-	412	86609153	pgk	CYB_1693	-	phosphoglycerate kinase
1650	 60.54	0	1771093..1772511	+	472	86609154	pds	CYB_1694	-	phytoene desaturase
1651	 61.55	0	1772668..1773546	+	292	86609155	crtB	CYB_1695	-	phytoene synthase
1652	 59.93	0	1773629..1774444	+	271	86609156	-	CYB_1697	-	ABC-2 transporter, permease protein
1653	 61.73	0	1774441..1779645	-	1734	86609157	-	CYB_1696	-	DEAD-box ATP dependent DNA helicase
1654	 51.52	-1	1779761..1780156	-	131	86609158	-	CYB_1698	-	PilT domain-containing protein
1655	 58.82	0	1780159..1780362	-	67	86609159	-	CYB_1699	-	hypothetical protein
1656	 60.93	0	1780406..1784920	-	1504	86609160	-	CYB_1700	-	hypothetical protein
1657	 62.63	+1	1784956..1787850	-	964	86609161	-	CYB_1701	-	putative helicase
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.