IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1420	 59.19	0	1533167..1533661	-	164	86608924	-	CYB_1456	-	hypothetical protein
1421	 63.28	+1	1533681..1534388	-	235	86608925	-	CYB_1457	-	cyclic nucleotide-binding protein
1422	 59.88	0	1534649..1535311	+	220	86608926	-	CYB_1458	-	RNA polymerase sigma factor RpoE
1423	 62.28	0	1535308..1535922	+	204	86608927	-	CYB_1459	-	hypothetical protein
1424	 62.38	0	1535958..1536587	+	209	86608928	-	CYB_1460	-	hypothetical protein
1425	 57.14	0	1536653..1536967	+	104	86608929	-	CYB_1461	-	hypothetical protein
1426	 63.01	+1	1536992..1538086	+	364	86608930	-	CYB_1462	-	S-layer domain-containing protein
1427	 60.53	0	1538390..1538959	+	189	86608931	ycf4	CYB_1463	-	photosystem I assembly protein Ycf4
1428	 58.31	0	1539171..1540403	+	410	86608932	-	CYB_1464	-	polyamine/opine/phosphonate ABC transporter periplasmic substrate-binding protein
1429	 52.58	-1	1540613..1541620	+	335	86608933	phnD-2	CYB_1465	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
1430	 52.86	-1	1541970..1542947	+	325	86608934	phnD	CYB_1466	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
1431	 55.93	0	1543089..1543898	+	269	86608935	phnC-2	CYB_1467	-	phosphonate ABC transporter, ATP-binding protein
1432	 54.94	0	1543957..1544766	+	269	86608936	phnE-2	CYB_1468	-	phosphonate ABC transporter, permease protein
1433	 54.74	0	1544766..1545578	+	270	86608937	phnE-3	CYB_1469	-	phosphonate ABC transporter, permease protein
1434	 57.95	0	1546359..1547942	-	527	86608938	-	CYB_1471	-	NAD(P)H-quinone oxidoreductase subunit 2
1435	 62.66	+1	1548067..1549365	-	432	86608939	gvpK	CYB_1472	-	HAD hydrolase-like protein/gas vesicle protein K
1436	 59.38	0	1549452..1549931	-	159	86608940	-	CYB_1473	-	peptidylprolyl cis-trans isomerase, cyclophilin-type
1437	 52.41	-1	1550153..1550629	-	158	86608941	-	CYB_1474	-	hypothetical protein
1438	 56.06	0	1550679..1550876	-	65	86608942	-	CYB_1475	-	hypothetical protein
1439	 53.76	-1	1551013..1551105	+	30	86608943	-	CYB_1476	-	hypothetical protein
1440	 56.49	0	1551150..1552112	+	320	86608944	-	CYB_1477	-	sigma-70 family RNA polymerase sigma factor
1441	 60.12	0	1552234..1553868	-	544	86608945	pyrG	CYB_1478	-	CTP synthetase
1442	 65.46	+1	1553929..1554426	-	165	86608946	-	CYB_1479	-	hypothetical protein
1443	 61.04	0	1554622..1555617	+	331	86608947	-	CYB_1480	-	aldo/keto reductase family oxidoreductase
1444	 63.01	+1	1555786..1558380	+	864	86608948	-	CYB_1481	-	copper-translocating P-type ATPase
1445	 59.26	0	1558659..1559549	+	296	86608949	-	CYB_1482	-	hypothetical protein
1446	 59.66	0	1559947..1560831	+	294	86608950	-	CYB_1483	-	hypothetical protein
1447	 52.85	-1	1560912..1561280	+	122	86608951	-	CYB_1484	-	roadblock/LC7 domain-contain protein
1448	 52.72	-1	1561335..1561886	+	183	86608952	-	CYB_1485	-	hypothetical protein
1449	 49.82	-2	1562119..1562664	+	181	86608953	-	CYB_1486	-	putative small GTP-binding protein
1450	 61.17	0	1562864..1563481	+	205	86608954	pyrE	CYB_1487	-	orotate phosphoribosyltransferase
1451	 61.05	0	1563522..1564394	+	290	86608955	-	CYB_1488	-	polysaccharide deacetylase family protein
1452	 60.34	0	1564556..1566151	+	531	86608956	malQ	CYB_1490	-	4-alpha-glucanotransferase
1453	 61.17	0	1566148..1566420	-	90	86608957	-	CYB_1489	-	carbohydrate ABC transporter ATP-binding protein
1454	 56.86	0	1566697..1566849	-	50	86608958	-	CYB_1491	-	carbohydrate ABC transporter ATP-binding protein
1455	 57.45	0	1566888..1568699	-	603	86608959	thrS	CYB_1492	-	threonyl-tRNA synthetase
1456	 61.92	0	1568892..1570619	+	575	86608960	-	CYB_1493	-	putative exopolyphosphatase
1457	 61.15	0	1570638..1572323	-	561	86608961	-	CYB_1494	-	S-layer domain-containing protein
1458	 54.88	0	1572633..1572878	+	81	86608962	psbE	CYB_1495	-	cytochrome b559 subunit alpha
1459	 48.48	-2	1572955..1573086	+	43	86608963	psbF	CYB_1496	-	cytochrome b559 subunit beta
1460	 49.21	-2	1573092..1573217	+	41	86608964	psbL	CYB_1497	-	photosystem II reaction center protein PsbL
1461	 52.50	-1	1573359..1573478	+	39	86608965	psbJ	CYB_1498	-	photosystem II reaction center protein J
1462	 57.54	0	1574007..1574477	+	156	86608966	psaL-1	CYB_1499	-	photosystem I reaction center protein subunit XI
1463	 48.25	-2	1574516..1574629	+	37	86608967	psaI	CYB_1500	-	photosystem I reaction center subunit VIII
1464	 55.43	0	1574931..1575197	+	88	86608968	-	CYB_1501	-	hypothetical protein
1465	 60.56	0	1575253..1576710	-	485	86608969	-	CYB_1502	-	hypothetical protein
1466	 60.89	0	1577051..1578643	-	530	86608970	-	CYB_1503	-	DnaK family protein
1467	 61.50	0	1578643..1579203	-	186	86608971	-	CYB_1504	-	hypothetical protein
1468	 60.96	0	1579254..1579796	-	180	86608972	-	CYB_1505	-	hypothetical protein
1469	 42.34	-2	1579854..1580075	-	73	86608973	-	CYB_1506	-	hypothetical protein
1470	 53.61	-1	1580056..1580415	-	119	86608974	-	CYB_1507	-	hypothetical protein
1471	 62.75	+1	1580596..1581873	+	425	86608975	trpB	CYB_1508	-	tryptophan synthase subunit beta
1472	 65.43	+1	1581911..1582717	+	268	86608976	-	CYB_1509	-	hypothetical protein
1473	 66.41	+1	1582707..1583471	+	254	86608977	-	CYB_1510	-	pantothenate kinase
1474	 66.49	+1	1583525..1584661	+	378	86608978	aroC	CYB_1511	-	chorismate synthase
1475	 63.15	+1	1584674..1586068	+	464	86608979	radA	CYB_1512	-	DNA repair protein RadA
1476	 62.25	0	1586329..1587234	+	301	86608980	-	CYB_1513	-	hypothetical protein
1477	 62.89	+1	1587285..1588820	+	511	86608981	lysS	CYB_1514	-	lysyl-tRNA synthetase
1478	 62.39	0	1588914..1592726	-	1270	86608982	-	CYB_1515	-	TPR repeat-containing protein kinase
1479	 62.30	0	1592885..1594510	-	541	86608983	-	CYB_1516	-	copper resistance protein CopC/D
1480	 61.11	0	1594528..1595121	-	197	86608984	-	CYB_1517	-	nuclear export factor GLE1-like protein
1481	 64.00	+1	1595184..1595483	-	99	86608985	-	CYB_1518	-	hypothetical protein
1482	 54.39	-1	1595531..1595872	-	113	86608986	petJ	CYB_1519	-	cytochrome c6
1483	 58.27	0	1596008..1597948	+	646	86608987	dnaG	CYB_1520	-	DNA primase
1484	 61.51	0	1598112..1600766	-	884	86608988	alaS	CYB_1521	-	alanyl-tRNA synthetase
1485	 60.53	0	1601051..1602712	+	553	86608989	-	CYB_1522	-	serine/threonine protein kinase
1486	 60.52	0	1602950..1603453	-	167	86608990	-	CYB_1523	-	hypothetical protein
1487	 59.14	0	1603736..1604917	+	393	86608991	-	CYB_1525	-	aldo/keto reductase family oxidoreductase
1488	 50.00	-2	1605052..1605321	+	89	86608992	-	CYB_1526	-	hypothetical protein
1489	 42.35	-2	1605318..1605572	+	84	86608993	-	CYB_1527	-	hypothetical protein
1490	 52.48	-1	1605674..1605814	+	46	86608994	-	CYB_1528	-	hypothetical protein
1491	 53.16	-1	1605871..1606329	-	152	86608995	-	CYB_1529	-	hypothetical protein
1492	 54.97	0	1606419..1608770	+	783	86608996	-	CYB_1530	-	exonuclease family protein
1493	 55.56	0	1608802..1608954	-	50	86608997	-	CYB_1531	-	hypothetical protein
1494	 60.32	0	1609215..1609340	+	41	86608998	-	CYB_1533	-	hypothetical protein
1495	 56.98	0	1609362..1610156	+	264	86608999	rpsB	CYB_1534	-	ribosomal protein S2
1496	 54.05	-1	1610316..1611092	+	258	86609000	tsf	CYB_1535	-	elongation factor Ts
1497	 61.58	0	1611315..1612730	+	471	86609001	-	CYB_1536	-	amidohydrolase family protein
1498	 61.92	0	1612787..1613734	+	315	86609002	-	CYB_1537	-	iron-sulfur cluster binding protein, putative
1499	 54.50	0	1613937..1615136	+	399	86609003	-	CYB_1538	-	hypothetical protein
1500	 61.21	0	1615213..1616532	-	439	86609004	dnaN	CYB_1539	-	DNA polymerase III subunit beta
1501	 48.65	-2	1616734..1616844	-	36	86609005	-	CYB_1540	-	hypothetical protein
1502	 44.76	-2	1616768..1616872	+	34	86609006	-	CYB_1541	-	hypothetical protein
1503	 59.40	0	1617021..1617254	-	77	86609007	-	CYB_1542	-	hypothetical protein
1504	 56.02	0	1617330..1619612	-	760	86609008	-	CYB_1543	-	RelA/SpoT family protein
1505	 60.17	0	1619763..1619993	-	76	86609009	-	CYB_1544	-	hypothetical protein
1506	 59.84	0	1620132..1621991	-	619	86609010	pyk	CYB_1545	-	pyruvate kinase
1507	 56.79	0	1622162..1622404	+	80	86609011	-	CYB_1546	-	hypothetical protein
1508	 52.19	-1	1622493..1623155	-	220	86609012	-	CYB_1547	-	hypothetical protein
1509	 60.64	0	1623299..1624045	-	248	86609013	-	CYB_1548	-	GvpL/GvpF family gas vesicle protein
1510	 57.93	0	1624023..1625144	-	373	86609014	-	CYB_1549	-	nucleotidyl transferase family protein
1511	 61.16	0	1625446..1626153	+	235	86609015	hisG	CYB_1550	-	ATP phosphoribosyltransferase catalytic subunit
1512	 59.37	0	1626262..1627056	+	264	86609016	psbO	CYB_1551	-	photosystem II manganese-stabilizing protein
1513	 58.56	0	1627317..1627427	-	36	86609017	-	CYB_1552	-	hypothetical protein
1514	 62.95	+1	1627420..1628604	+	394	86609018	-	CYB_1554	-	oxidoreductase FAD-binding subunit
1515	 62.18	0	1627639..1628709	-	356	86609019	-	CYB_1553	-	hypothetical protein
1516	 61.25	0	1628714..1629673	+	319	86609020	-	CYB_1556	-	NAD dependent epimerase/dehydratase family protein
1517	 62.47	0	1629670..1630407	-	245	86609021	devA	CYB_1555	-	glycolipid ABC exporter (DevE) family ATP-binding protein
1518	 59.07	0	1630633..1631817	-	394	86609022	devC	CYB_1557	-	glycolipid ABC exporter (DevE) family permease protein
1519	 64.61	+1	1631827..1632849	-	340	86609023	-	CYB_1558	-	membrane fusion protein family protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.