IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1344	 63.11	+1	1442816..1443910	-	364	86608848	-	CYB_1374	-	glucose/sorbosone dehydrogenase family protein
1345	 63.46	+1	1444119..1446581	+	820	86608849	-	CYB_1375	-	glycosy hydrolase family protein
1346	 59.62	0	1446805..1447272	-	155	86608850	-	CYB_1376	-	anti-oxidant AhpCTSA family protein
1347	 60.14	0	1452738..1454039	-	433	86608851	folC	CYB_1382	-	folylpolyglutamate synthase
1348	 58.76	0	1454116..1455696	-	526	86608852	serA	CYB_1383	-	D-3-phosphoglycerate dehydrogenase
1349	 61.47	0	1455930..1457141	+	403	86608853	ackA	CYB_1384	-	acetate kinase
1350	 59.78	0	1457260..1457724	+	154	86608854	-	CYB_1385	-	putative lipoprotein
1351	 54.33	-1	1458254..1458796	+	180	86608855	-	CYB_1386	-	FHA domain-containing protein
1352	 48.84	-2	1458820..1458948	-	42	86608856	-	CYB_1387	-	hypothetical protein
1353	 57.62	0	1458975..1460996	+	673	86608857	-	CYB_1388	-	FHA domain-containing protein
1354	 52.32	-1	1461255..1461707	+	150	86608858	-	CYB_1389	-	hypothetical protein
1355	 61.86	0	1461829..1462764	+	311	86608859	ispE	CYB_1390	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
1356	 61.65	0	1462919..1464274	+	451	86608860	accC	CYB_1391	-	acetyl-CoA carboxylase biotin carboxylase subunit
1357	 62.03	0	1464369..1465361	+	330	86608861	-	CYB_1392	-	phage integrase family site specific recombinase
1358	 44.74	-2	1465526..1466551	-	341	86608862	-	CYB_1393	-	hypothetical protein
1359	 50.45	-1	1466542..1466985	-	147	86608863	-	CYB_1394	-	DnaJ domain-containing protein
1360	 47.01	-2	1467080..1467196	+	38	86608864	-	CYB_1395	-	hypothetical protein
1361	 59.67	0	1467236..1467478	-	80	86608865	-	CYB_1396	-	carbohydrate ABC transporter ATP-binding protein
1362	 51.98	-1	1467480..1467656	-	58	86608866	-	CYB_1397	-	hypothetical protein
1363	 61.27	0	1467672..1468097	-	141	86608867	-	CYB_1398	-	hypothetical protein
1364	 55.78	0	1468099..1468245	-	48	86608868	-	CYB_1399	-	hypothetical protein
1365	 57.70	0	1468228..1468863	+	211	86608869	-	CYB_1400	-	ExoD family protein
1366	 60.85	0	1468881..1470101	-	406	86608870	-	CYB_1401	-	putative S-layer protein
1367	 61.56	0	1470381..1471673	-	430	86608871	sufD	CYB_1402	-	FeS assembly protein SufD
1368	 56.13	0	1471670..1472485	-	271	86608872	sufC	CYB_1403	-	FeS assembly ATPase SufC
1369	 47.12	-2	1472583..1472981	-	132	86608873	mscL	CYB_1404	-	large conductance mechanosensitive channel protein
1370	 56.02	0	1473110..1474546	-	478	86608874	sufB	CYB_1405	-	cysteine desulfurase activator complex subunit SufB
1371	 60.67	0	1474726..1475442	+	238	86608875	sufR	CYB_1406	-	iron-sulfur cluster biosynthesis transcriptional regulator SufR
1372	 61.53	0	1475732..1476802	+	356	86608876	-	CYB_1407	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1373	 58.82	0	1477034..1477390	+	118	86608877	folB-1	CYB_1408	-	dihydroneopterin aldolase
1374	 60.65	0	1477421..1478002	+	193	86608878	miaE	CYB_1409	-	tRNA-(MS[2]IO[6]A)-hydroxylase
1375	 60.15	0	1478037..1479386	+	449	86608879	-	CYB_1410	-	sensor histidine kinase
1376	 56.57	0	1479599..1479796	-	65	86608880	-	CYB_1411	-	hypothetical protein
1377	 52.93	-1	1479696..1481996	+	766	86608881	-	CYB_1412	-	GDSL-like lipase/acylhydrolase domain-containing protein
1378	 61.02	0	1482257..1483867	-	536	86608882	lnt	CYB_1414	-	apolipoprotein N-acyltransferase
1379	 57.36	0	1484099..1484635	+	178	86608883	-	CYB_1415	-	HNH endonuclease domain-containing protein
1380	 61.86	0	1484645..1485580	-	311	86608884	-	CYB_1416	-	alpha/beta fold family hydrolase
1381	 59.47	0	1485677..1486204	-	175	86608885	cysC	CYB_1417	-	adenylylsulfate kinase
1382	 62.48	0	1486359..1487624	+	421	86608886	argD	CYB_1419	-	acetylornithine aminotransferase
1383	 63.36	+1	1487621..1488043	-	140	86608887	-	CYB_1418	-	hypothetical protein
1384	 59.39	0	1488218..1489042	+	274	86608888	-	CYB_1420	-	creatininase
1385	 60.67	0	1489481..1490731	-	416	86608889	aspB	CYB_1421	-	L,L-diaminopimelate aminotransferase
1386	 62.05	0	1490936..1491823	+	295	86608890	-	CYB_1422	-	leucine-rich repeat-containing protein
1387	 63.95	+1	1491837..1493015	-	392	86608891	-	CYB_1423	-	hypothetical protein
1388	 65.26	+1	1493069..1494565	-	498	86608892	hemG	CYB_1424	-	protoporphyrinogen oxidase
1389	 63.54	+1	1494723..1496033	-	436	86608893	hom	CYB_1425	-	homoserine dehydrogenase
1390	 61.39	0	1496238..1497014	-	258	86608894	gvpW	CYB_1426	-	gas vesicle protein W
1391	 60.25	0	1497273..1497911	+	212	86608895	-	CYB_1428	-	hypothetical protein
1392	 63.09	+1	1497843..1498625	-	260	86608896	surE	CYB_1427	-	stationary phase survival protein SurE
1393	 61.65	0	1498813..1499829	+	338	86608897	gap-1	CYB_1429	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1394	 58.20	0	1499889..1501235	-	448	86608898	ampG	CYB_1430	-	peptide-acetyl-coenzyme A transporter (PAT) family protein AmpG
1395	 62.46	0	1501791..1502765	-	324	86608899	-	CYB_1431	-	oxidoreductase, NAD-binding
1396	 57.30	0	1502940..1503590	-	216	86608900	-	CYB_1432	-	iron-sulfur cluster-binding protein, putative
1397	 58.06	0	1503574..1503852	-	92	86608901	-	CYB_1433	-	hypothetical protein
1398	 59.06	0	1503976..1504527	-	183	86608902	-	CYB_1434	-	DNA protection protein
1399	 51.46	-1	1504815..1506077	+	420	86608903	-	CYB_1436	-	GTP-binding protein
1400	 55.25	0	1506069..1507049	-	326	86608904	-	CYB_1435	-	glycosyl transferase, group 2 family protein
1401	 61.04	0	1507121..1508080	-	319	86608905	hslO	CYB_1437	-	Hsp33-like chaperonin
1402	 58.44	0	1508399..1508884	+	161	86608906	apcA	CYB_1438	-	allophycocyanin, alpha subunit
1403	 58.64	0	1508948..1509433	+	161	86608907	apcB-1	CYB_1439	-	allophycocyanin, beta subunit
1404	 57.84	0	1509600..1509803	+	67	86608908	apcC	CYB_1440	-	phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core
1405	 62.00	0	1509937..1510965	+	342	86608909	-	CYB_1441	-	ABC transporter, ATP-binding protein
1406	 59.90	0	1511096..1512736	-	546	86608910	leuA	CYB_1442	-	2-isopropylmalate synthase
1407	 59.89	0	1512796..1513710	-	304	86608911	-	CYB_1443	-	putative arylamine N-acetyltransferase
1408	 58.16	0	1513962..1514243	+	93	86608912	moaD	CYB_1444	-	molybdopterin converting factor, subunit 1
1409	 60.54	0	1514303..1516441	+	712	86608913	pnpA	CYB_1445	-	polynucleotide phosphorylase/polyadenylase
1410	 61.91	0	1516617..1518803	+	728	86608914	-	CYB_1446	-	sensor histidine kinase
1411	 57.21	0	1519383..1519604	-	73	86608915	-	CYB_1447	-	CAB/ELIP/HLIP family protein
1412	 61.70	0	1519801..1520283	+	160	86608916	-	CYB_1448	-	pyridoxamine 5'-phosphate oxidase family protein
1413	 61.43	0	1520351..1521286	-	311	86608917	-	CYB_1449	-	alpha/beta fold family hydrolase
1414	 54.84	0	1521393..1522610	-	405	86608918	-	CYB_1450	-	ISSoc1, transposase
1415	 63.96	+1	1522979..1525192	+	737	86608919	-	CYB_1451	-	hypothetical protein
1416	 56.28	0	1525407..1525955	+	182	86608920	-	CYB_1452	-	NADPH-dependent FMN reductase
1417	 62.34	0	1526591..1529545	+	984	86608921	-	CYB_1453	-	sensor histidine kinase
1418	 61.18	0	1529570..1530553	-	327	86608922	-	CYB_1454	-	putative transporter
1419	 63.88	+1	1530948..1533032	-	694	86608923	-	CYB_1455	-	DnaJ domain-containing protein
1420	 59.19	0	1533167..1533661	-	164	86608924	-	CYB_1456	-	hypothetical protein
1421	 63.28	+1	1533681..1534388	-	235	86608925	-	CYB_1457	-	cyclic nucleotide-binding protein
1422	 59.88	0	1534649..1535311	+	220	86608926	-	CYB_1458	-	RNA polymerase sigma factor RpoE
1423	 62.28	0	1535308..1535922	+	204	86608927	-	CYB_1459	-	hypothetical protein
1424	 62.38	0	1535958..1536587	+	209	86608928	-	CYB_1460	-	hypothetical protein
1425	 57.14	0	1536653..1536967	+	104	86608929	-	CYB_1461	-	hypothetical protein
1426	 63.01	+1	1536992..1538086	+	364	86608930	-	CYB_1462	-	S-layer domain-containing protein
1427	 60.53	0	1538390..1538959	+	189	86608931	ycf4	CYB_1463	-	photosystem I assembly protein Ycf4
1428	 58.31	0	1539171..1540403	+	410	86608932	-	CYB_1464	-	polyamine/opine/phosphonate ABC transporter periplasmic substrate-binding protein
1429	 52.58	-1	1540613..1541620	+	335	86608933	phnD-2	CYB_1465	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
1430	 52.86	-1	1541970..1542947	+	325	86608934	phnD	CYB_1466	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
1431	 55.93	0	1543089..1543898	+	269	86608935	phnC-2	CYB_1467	-	phosphonate ABC transporter, ATP-binding protein
1432	 54.94	0	1543957..1544766	+	269	86608936	phnE-2	CYB_1468	-	phosphonate ABC transporter, permease protein
1433	 54.74	0	1544766..1545578	+	270	86608937	phnE-3	CYB_1469	-	phosphonate ABC transporter, permease protein
1434	 57.95	0	1546359..1547942	-	527	86608938	-	CYB_1471	-	NAD(P)H-quinone oxidoreductase subunit 2
1435	 62.66	+1	1548067..1549365	-	432	86608939	gvpK	CYB_1472	-	HAD hydrolase-like protein/gas vesicle protein K
1436	 59.38	0	1549452..1549931	-	159	86608940	-	CYB_1473	-	peptidylprolyl cis-trans isomerase, cyclophilin-type
1437	 52.41	-1	1550153..1550629	-	158	86608941	-	CYB_1474	-	hypothetical protein
1438	 56.06	0	1550679..1550876	-	65	86608942	-	CYB_1475	-	hypothetical protein
1439	 53.76	-1	1551013..1551105	+	30	86608943	-	CYB_1476	-	hypothetical protein
1440	 56.49	0	1551150..1552112	+	320	86608944	-	CYB_1477	-	sigma-70 family RNA polymerase sigma factor
1441	 60.12	0	1552234..1553868	-	544	86608945	pyrG	CYB_1478	-	CTP synthetase
1442	 65.46	+1	1553929..1554426	-	165	86608946	-	CYB_1479	-	hypothetical protein
1443	 61.04	0	1554622..1555617	+	331	86608947	-	CYB_1480	-	aldo/keto reductase family oxidoreductase
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.