IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1265	 48.15	-2	1352304..1355057	-	917	86608769	-	CYB_1294	-	macrocin-O-methyltransferase domain-containing protein
1266	 51.41	-1	1355062..1357113	-	683	86608770	-	CYB_1295	-	FkbM family methyltransferase
1267	 53.79	-1	1357129..1357959	-	276	86608771	-	CYB_1296	-	hypothetical protein
1268	 54.93	0	1358130..1359347	-	405	86608772	-	CYB_1297	-	ISSoc1, transposase
1269	 61.14	0	1359648..1361204	-	518	86608773	crtH	CYB_1298	-	carotenoid isomerase
1270	 59.41	0	1361408..1362427	+	339	86608774	-	CYB_1300	-	Rieske family iron-sulfur cluster-binding protein
1271	 60.67	0	1362410..1363360	-	316	86608775	potB	CYB_1299	-	spermidine/putrescine ABC transporter, permease protein
1272	 60.95	0	1363354..1364508	-	384	86608776	potA	CYB_1301	-	spermidine/putrescine ABC transporter, ATP-binding protein
1273	 61.05	0	1364733..1365587	-	284	86608777	-	CYB_1302	-	leucine-rich repeat-containing protein
1274	 60.11	0	1365814..1366362	-	182	86608778	-	CYB_1303	-	hypothetical protein
1275	 62.22	0	1366407..1368746	-	779	86608779	dnaX	CYB_1304	-	DNA polymerase III, subunits gamma and tau
1276	 60.00	0	1368869..1369348	-	159	86608780	-	CYB_1305	-	hypothetical protein
1277	 61.51	0	1369405..1370121	-	238	86608781	coaE	CYB_1306	-	dephospho-CoA kinase
1278	 61.72	0	1370139..1371857	-	572	86608782	-	CYB_1307	-	alpha-isopropylmalate/homocitrate synthase family transferase
1279	 55.38	0	1371847..1372218	-	123	86608783	-	CYB_1308	-	hypothetical protein
1280	 60.69	0	1372687..1373607	+	306	86608784	-	CYB_1309	-	hypothetical protein
1281	 61.04	0	1373768..1375492	+	574	86608785	-	CYB_1310	-	hypothetical protein
1282	 53.55	-1	1375774..1376055	+	93	86608786	-	CYB_1311	-	hypothetical protein
1283	 65.13	+1	1376080..1376469	-	129	86608787	-	CYB_1312	-	putative lipoprotein
1284	 57.44	0	1376501..1377226	-	241	86608788	-	CYB_1313	-	hypothetical protein
1285	 57.19	0	1377268..1377837	-	189	86608789	-	CYB_1314	-	hypothetical protein
1286	 57.94	0	1377927..1378178	-	83	86608790	-	CYB_1315	-	hypothetical protein
1287	 56.23	0	1378426..1378770	-	114	86608791	-	CYB_1316	-	ArsR family transcriptional regulator
1288	 60.59	0	1379591..1380676	-	361	86608792	-	CYB_1318	-	Ser/Thr protein phosphatase family protein
1289	 58.16	0	1381004..1381438	+	144	86608793	-	CYB_1319	-	FUR family transcriptional regulator
1290	 60.64	0	1381486..1383591	-	701	86608794	-	CYB_1320	-	hypothetical protein
1291	 61.90	0	1383698..1384201	-	167	86608795	-	CYB_1321	-	acetyltransferase
1292	 56.28	0	1384266..1385459	-	397	86608796	-	CYB_1322	-	ISSoc1, transposase
1293	 59.19	0	1385548..1386015	-	155	86608797	-	CYB_1323	-	cyclase/dehydrase family protein
1294	 57.73	0	1386259..1387086	+	275	86608798	-	CYB_1325	-	hypothetical protein
1295	 60.11	0	1387083..1387433	-	116	86608799	-	CYB_1324	-	antibiotic biosynthesis monooxygenase domain-containing protein
1296	 64.06	+1	1387469..1388773	-	434	86608800	aroA	CYB_1326	-	3-phosphoshikimate 1-carboxyvinyltransferase
1297	 61.35	0	1388992..1389951	+	319	86608801	mraW	CYB_1327	-	S-adenosyl-methyltransferase MraW
1298	 57.01	0	1390128..1390676	+	182	86608802	-	CYB_1328	-	hypothetical protein
1299	 57.66	0	1390883..1390993	+	36	86608803	-	CYB_1329	-	hypothetical protein
1300	 56.47	0	1391212..1393182	+	656	86608804	-	CYB_1330	-	outer membrane receptor (OMR) family protein
1301	 53.49	-1	1393332..1393718	+	128	86608805	-	CYB_1331	-	iron-sulfur cluster-binding protein, putative
1302	 54.83	0	1393730..1394599	+	289	86608806	-	CYB_1332	-	iron-sulfur cluster-binding protein, putative
1303	 55.86	0	1394604..1395251	+	215	86608807	-	CYB_1333	-	hypothetical protein
1304	 60.91	0	1395356..1397422	+	688	86608808	-	CYB_1334	-	arsenite-antimonite ArsAB efflux family transporter ATP-binding protein ArsAB
1305	 62.98	+1	1397455..1399515	+	686	86608809	ligA	CYB_1335	-	DNA ligase, NAD-dependent
1306	 57.16	0	1400328..1401674	+	448	86608810	clpX	CYB_1336	-	ATP-dependent protease ATP-binding subunit
1307	 60.58	0	1401745..1402434	+	229	86608811	-	CYB_1337	-	Trk family K(+) transporter
1308	 60.76	0	1402446..1403918	+	490	86608812	-	CYB_1338	-	Trk family K(+) transporter
1309	 57.45	0	1403997..1405103	+	368	86608813	-	CYB_1339	-	DRTGG domain-containing protein
1310	 61.96	0	1405600..1406109	+	169	86608814	rnhA	CYB_1340	-	ribonuclease H
1311	 53.16	-1	1406170..1409256	-	1028	86608815	-	CYB_1341	-	glycosyl transferase, group 1 family protein
1312	 61.01	0	1409784..1411427	+	547	86608816	-	CYB_1342	-	hypothetical protein
1313	 61.96	0	1411475..1412218	-	247	86608817	-	CYB_1343	-	DNA-binding response regulator
1314	 60.21	0	1412287..1413045	-	252	86608818	-	CYB_1344	-	sensor histidine kinase
1315	 62.61	+1	1413155..1414633	-	492	86608819	-	CYB_1345	-	sensor histidine kinase
1316	 61.20	0	1414778..1415764	-	328	86608820	-	CYB_1346	-	pentapeptide repeat-containing protein
1317	 58.03	0	1415906..1417561	-	551	86608821	-	CYB_1347	-	hypothetical protein
1318	 60.29	0	1417613..1418506	-	297	86608822	-	CYB_1348	-	succinate/fumarate oxidoreductase, putative
1319	 60.25	0	1419042..1419602	+	186	86608823	-	CYB_1349	-	hypothetical protein
1320	 59.60	0	1419905..1420654	+	249	86608824	-	CYB_1350	-	hypothetical protein
1321	 51.92	-1	1420708..1421019	-	103	86608825	-	CYB_1351	-	hypothetical protein
1322	 58.08	0	1421296..1421493	-	65	86608826	-	CYB_1352	-	hypothetical protein
1323	 61.55	0	1421431..1422348	+	305	86608827	rbsK	CYB_1353	-	ribokinase
1324	 55.65	0	1422603..1423346	+	247	86608828	-	CYB_1354	-	response regulator
1325	 62.31	0	1423513..1425348	-	611	86608829	-	CYB_1355	-	hypothetical protein
1326	 62.10	0	1425514..1426740	+	408	86608830	-	CYB_1356	-	pentapeptide repeat-containing protein
1327	 61.01	0	1426849..1427961	+	370	86608831	-	CYB_1357	-	YjgP/YjgQ family protein
1328	 63.18	+1	1429582..1430670	+	362	86608832	ald	CYB_1358	-	alanine dehydrogenase
1329	 58.27	0	1430708..1431481	-	257	86608833	-	CYB_1359	-	ABC transporter, permease protein
1330	 58.07	0	1431558..1432418	-	286	86608834	-	CYB_1360	-	ABC transporter, ATP-binding protein
1331	 58.77	0	1432669..1433301	-	210	86608835	-	CYB_1361	-	3'-5' exonuclease family protein
1332	 60.78	0	1433359..1433664	-	101	86608836	rpsN	CYB_1362	-	30S ribosomal protein S14
1333	 57.14	0	1433861..1434175	+	104	86608837	-	CYB_1364	-	hypothetical protein
1334	 62.08	0	1434172..1435719	-	515	86608838	-	CYB_1363	-	GTP-binding protein
1335	 62.20	0	1435803..1436294	-	163	86608839	-	CYB_1365	-	hypothetical protein
1336	 46.85	-2	1436483..1436593	-	36	86608840	-	CYB_1366	-	hypothetical protein
1337	 59.68	0	1436814..1437128	+	104	86608841	-	CYB_1367	-	hypothetical protein
1338	 52.66	-1	1437380..1439743	-	787	86608842	pcrA	CYB_1368	-	ATP-dependent DNA helicase PcrA
1339	 57.09	0	1439945..1440508	+	187	86608843	-	CYB_1369	-	hypothetical protein
1340	 60.44	0	1440739..1441284	+	181	86608844	-	CYB_1370	-	hypothetical protein
1341	 61.77	0	1441288..1442145	-	285	86608845	dapF	CYB_1371	-	diaminopimelate epimerase
1342	 54.55	0	1442184..1442315	-	43	86608846	psbN	CYB_1372	-	photosystem II reaction center protein N
1343	 55.39	0	1442518..1442721	+	67	86608847	psbH	CYB_1373	-	photosystem II reaction center protein H
1344	 63.11	+1	1442816..1443910	-	364	86608848	-	CYB_1374	-	glucose/sorbosone dehydrogenase family protein
1345	 63.46	+1	1444119..1446581	+	820	86608849	-	CYB_1375	-	glycosy hydrolase family protein
1346	 59.62	0	1446805..1447272	-	155	86608850	-	CYB_1376	-	anti-oxidant AhpCTSA family protein
1347	 60.14	0	1452738..1454039	-	433	86608851	folC	CYB_1382	-	folylpolyglutamate synthase
1348	 58.76	0	1454116..1455696	-	526	86608852	serA	CYB_1383	-	D-3-phosphoglycerate dehydrogenase
1349	 61.47	0	1455930..1457141	+	403	86608853	ackA	CYB_1384	-	acetate kinase
1350	 59.78	0	1457260..1457724	+	154	86608854	-	CYB_1385	-	putative lipoprotein
1351	 54.33	-1	1458254..1458796	+	180	86608855	-	CYB_1386	-	FHA domain-containing protein
1352	 48.84	-2	1458820..1458948	-	42	86608856	-	CYB_1387	-	hypothetical protein
1353	 57.62	0	1458975..1460996	+	673	86608857	-	CYB_1388	-	FHA domain-containing protein
1354	 52.32	-1	1461255..1461707	+	150	86608858	-	CYB_1389	-	hypothetical protein
1355	 61.86	0	1461829..1462764	+	311	86608859	ispE	CYB_1390	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
1356	 61.65	0	1462919..1464274	+	451	86608860	accC	CYB_1391	-	acetyl-CoA carboxylase biotin carboxylase subunit
1357	 62.03	0	1464369..1465361	+	330	86608861	-	CYB_1392	-	phage integrase family site specific recombinase
1358	 44.74	-2	1465526..1466551	-	341	86608862	-	CYB_1393	-	hypothetical protein
1359	 50.45	-1	1466542..1466985	-	147	86608863	-	CYB_1394	-	DnaJ domain-containing protein
1360	 47.01	-2	1467080..1467196	+	38	86608864	-	CYB_1395	-	hypothetical protein
1361	 59.67	0	1467236..1467478	-	80	86608865	-	CYB_1396	-	carbohydrate ABC transporter ATP-binding protein
1362	 51.98	-1	1467480..1467656	-	58	86608866	-	CYB_1397	-	hypothetical protein
1363	 61.27	0	1467672..1468097	-	141	86608867	-	CYB_1398	-	hypothetical protein
1364	 55.78	0	1468099..1468245	-	48	86608868	-	CYB_1399	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.