IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1138	 62.07	0	1204260..1205042	-	260	86608642	gidB	CYB_1166	-	glucose-inhibited division protein B
1139	 58.18	0	1205039..1206028	-	329	86608643	-	CYB_1167	-	hypothetical protein
1140	 58.78	0	1206389..1207999	+	536	86608644	guaA	CYB_1168	-	bifunctional GMP synthase/glutamine amidotransferase protein
1141	 56.31	0	1208045..1208266	-	73	86608645	-	CYB_1169	-	hypothetical protein
1142	 53.07	-1	1208269..1208577	-	102	86608646	-	CYB_1170	-	hypothetical protein
1143	 55.00	0	1208687..1209706	-	339	86608647	-	CYB_1171	-	putative cobalamin biosynthesis protein CobW
1144	 59.65	0	1210125..1211165	-	346	86608648	-	CYB_1172	-	hypothetical protein
1145	 59.38	0	1211146..1211790	-	214	86608649	-	CYB_1173	-	hypothetical protein
1146	 52.46	-1	1212203..1212730	+	175	86608650	-	CYB_1174	-	FHA domain-containing protein
1147	 56.32	0	1212761..1213504	+	247	86608651	-	CYB_1175	-	hypothetical protein
1148	 57.73	0	1213522..1214304	+	260	86608652	-	CYB_1176	-	hypothetical protein
1149	 58.93	0	1214559..1215359	+	266	86608653	-	CYB_1177	-	putative lipoprotein
1150	 57.56	0	1215658..1216239	+	193	86608654	-	CYB_1178	-	RNA polymerase sigma factor
1151	 63.23	+1	1216236..1216991	+	251	86608655	-	CYB_1179	-	hypothetical protein
1152	 56.76	0	1217125..1217346	+	73	86608656	-	CYB_1180	-	hypothetical protein
1153	 59.42	0	1217387..1218214	+	275	86608657	-	CYB_1181	-	carbon-nitrogen family hydrolase
1154	 60.92	0	1218224..1218484	+	86	86608658	-	CYB_1182	-	glutaredoxin family protein
1155	 52.57	-1	1218522..1222019	-	1165	86608659	dnaE	CYB_1183	-	DNA polymerase III subunit alpha
1156	 60.58	0	1222137..1223204	+	355	86608660	selD	CYB_1184	-	selenide, water dikinase
1157	 59.24	0	1223348..1223845	+	165	86608661	-	CYB_1185	-	hypothetical protein
1158	 59.85	0	1223892..1225124	+	410	86608662	-	CYB_1186	-	oligopeptide ABC transporter, permease protein
1159	 58.70	0	1225172..1226113	-	313	86608663	-	CYB_1187	-	TPR domain-containing protein
1160	 57.89	0	1226375..1227001	+	208	86608664	-	CYB_1188	-	hypothetical protein
1161	 64.72	+1	1227223..1228095	-	290	86608665	-	CYB_1189	-	hypothetical protein
1162	 61.90	0	1228692..1229426	+	244	86608666	-	CYB_1190	-	HEAT repeat-containing PBS lyase
1163	 61.88	0	1229529..1230635	+	368	86608667	trmU	CYB_1191	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1164	 58.26	0	1230694..1231359	-	221	86608668	-	CYB_1192	-	hypothetical protein
1165	 62.12	0	1231467..1232786	-	439	86608669	-	CYB_1193	-	amine oxidase, flavin-containing
1166	 63.03	+1	1233137..1235416	-	759	86608670	-	CYB_1194	-	WD repeat-/protein kinase domain-containing protein
1167	 56.10	0	1235563..1236717	+	384	86608671	-	CYB_1195	-	ISSoc8, transposase
1168	 61.09	0	1236891..1239794	-	967	86608672	uvrA	CYB_1196	-	excinuclease ABC subunit A
1169	 61.22	0	1239978..1242344	+	788	86608673	-	CYB_1197	-	putative membrane-bound protease
1170	 58.81	0	1242592..1243941	+	449	86608674	-	CYB_1198	-	alkaline phosphatase
1171	 55.21	0	1243950..1244045	+	31	86608675	-	CYB_1199	-	hypothetical protein
1172	 55.40	0	1244278..1244703	+	141	86608676	-	CYB_1200	-	MarR family transcriptional regulator
1173	 56.47	0	1244786..1246021	+	411	86608677	-	CYB_1201	-	ISSoc1, transposase
1174	 61.13	0	1246086..1247060	-	324	86608678	-	CYB_1202	-	hydrophobic amino acid uptake ABC transporter permease
1175	 56.73	0	1247141..1247623	-	160	86608679	-	CYB_1203	-	hypothetical protein
1176	 57.49	0	1247663..1248196	+	177	86608680	-	CYB_1204	-	TM2 domain-containing protein
1177	 60.13	0	1248215..1248994	-	259	86608681	-	CYB_1205	-	putative ABC-2 type transporter, permease protein
1178	 60.47	0	1248994..1249929	-	311	86608682	-	CYB_1206	-	drug exporter ABC transporter ATP-binding protein
1179	 59.82	0	1250050..1253526	-	1158	86608683	mfd	CYB_1207	-	transcription-repair coupling factor
1180	 57.05	0	1253989..1255434	+	481	86608684	cydA	CYB_1208	-	cytochrome d ubiquinol oxidase, subunit I
1181	 54.48	0	1255628..1256677	+	349	86608685	cydB	CYB_1209	-	cytochrome d ubiquinol oxidase, subunit II
1182	 54.01	-1	1256771..1257394	-	207	86608686	-	CYB_1210	-	ISSoc2, transposase, truncation
1183	 57.41	0	1257376..1259115	-	579	86608687	-	CYB_1211	-	hypothetical protein
1184	 59.36	0	1259510..1260043	-	177	86608688	rimI	CYB_1212	-	ribosomal-protein-alanine acetyltransferase
1185	 62.00	0	1260050..1260499	-	149	86608689	-	CYB_1213	-	hypothetical protein
1186	 62.78	+1	1260496..1261680	-	394	86608690	purK	CYB_1214	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1187	 57.51	0	1261703..1261975	+	90	86608691	-	CYB_1215	-	hypothetical protein
1188	 57.89	0	1262126..1262524	+	132	86608692	-	CYB_1216	-	hypothetical protein
1189	 61.77	0	1262530..1263285	+	251	86608693	trmD	CYB_1217	-	tRNA (guanine-N(1)-)-methyltransferase
1190	 62.43	0	1263289..1263666	+	125	86608694	-	CYB_1218	-	hypothetical protein
1191	 54.21	-1	1263770..1264042	+	90	86608695	secE	CYB_1219	-	preprotein translocase subunit SecE
1192	 59.01	0	1264105..1264770	+	221	86608696	nusG	CYB_1220	-	transcription antitermination protein NusG
1193	 58.92	0	1264780..1265205	+	141	86608697	rplK	CYB_1221	-	50S ribosomal protein L11
1194	 58.65	0	1265312..1266022	+	236	86608698	rplA	CYB_1222	-	50S ribosomal protein L1
1195	 59.75	0	1266321..1266884	+	187	86608699	rplJ	CYB_1223	-	50S ribosomal protein L10
1196	 58.39	0	1266950..1267360	+	136	86608700	rplL	CYB_1224	-	50S ribosomal protein L7/L12
1197	 58.23	0	1267418..1267654	-	78	86608701	-	CYB_1225	-	hypothetical protein
1198	 57.93	0	1267757..1268992	+	411	86608702	-	CYB_1227	-	ISSoc1, transposase
1199	 55.67	0	1268972..1269817	-	281	86608703	-	CYB_1226	-	Rieske family iron-sulfur cluster-binding protein
1200	 59.71	0	1270032..1271426	+	464	86608704	-	CYB_1228	-	TonB family protein
1201	 55.38	0	1271496..1271681	-	61	86608705	rpsU	CYB_1229	-	30S ribosomal protein S21
1202	 62.70	+1	1272036..1273322	-	428	86608706	-	CYB_1230	-	trypsin domain-containing lipoprotein
1203	 60.46	0	1273448..1274140	+	230	86608707	-	CYB_1231	-	putative partition protein A
1204	 59.18	0	1274137..1274430	+	97	86608708	-	CYB_1232	-	hypothetical protein
1205	 63.02	+1	1274682..1275860	+	392	86608709	dxr	CYB_1233	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1206	 60.77	0	1275920..1277683	+	587	86608710	-	CYB_1234	-	heavy metal ABC transporter (HMT) family permease/ATP-binding protein
1207	 64.71	+1	1277744..1279276	+	510	86608711	murE	CYB_1235	-	UDP-N-acetylmuramyl-tripeptide synthetase
1208	 62.21	0	1279279..1280466	-	395	86608712	carA	CYB_1236	-	carbamoyl phosphate synthase small subunit
1209	 55.09	0	1280528..1281391	-	287	86608713	-	CYB_1237	-	type IV pilin, putative
1210	 56.87	0	1281432..1282544	-	370	86608714	-	CYB_1238	-	type IV pilin, putative
1211	 58.73	0	1282595..1283350	-	251	86608715	-	CYB_1239	-	type IV pilin, putative
1212	 60.26	0	1283415..1290932	-	2505	86608716	-	CYB_1240	-	hypothetical protein
1213	 59.17	0	1290942..1291061	-	39	86608717	-	CYB_1241	-	hypothetical protein
1214	 62.48	0	1291088..1291684	-	198	86608718	-	CYB_1242	-	DNA-binding response regulator
1215	 62.18	0	1291789..1292412	-	207	86608719	-	CYB_1243	-	pentapeptide repeat-containing protein
1216	 60.71	0	1292499..1293338	-	279	86608720	mutM	CYB_1244	-	formamidopyrimidine-DNA glycosylase
1217	 53.78	-1	1293385..1293609	-	74	86608721	psaE	CYB_1245	-	photosystem I reaction center subunit IV
1218	 62.82	+1	1293729..1294613	+	294	86608722	-	CYB_1246	-	penicillin-binding protein
1219	 55.56	0	1294730..1294882	+	50	86608723	-	CYB_1247	-	CAB/ELIP/HLIP family protein
1220	 61.60	0	1295153..1296829	-	558	86608724	nadE	CYB_1248	-	NAD+ synthetase
1221	 54.53	0	1296879..1297727	-	282	86608725	-	CYB_1249	-	sensor histidine kinase
1222	 51.33	-1	1297936..1300380	-	814	86608726	-	CYB_1250	-	sensory box protein
1223	 55.13	0	1300591..1302462	-	623	86608727	uvrC	CYB_1251	-	excinuclease ABC subunit C
1224	 54.17	-1	1303083..1303178	+	31	86608728	-	CYB_1252	-	hypothetical protein
1225	 61.85	0	1303586..1308193	+	1535	86608729	gltS	CYB_1253	-	ferredoxin-dependent glutamate synthase
1226	 57.42	0	1308298..1309389	+	363	86608730	acsF	CYB_1254	-	magnesium-protoporphyrin IX monomethyl ester cyclase
1227	 62.67	+1	1309437..1310912	+	491	86608731	-	CYB_1255	-	hypothetical protein
1228	 63.20	+1	1310954..1312915	+	653	86608732	-	CYB_1256	-	TPR domain-containing protein
1229	 59.43	0	1313018..1314289	+	423	86608733	-	CYB_1257	-	chromate transporter
1230	 58.16	0	1314364..1315503	-	379	86608734	lgt-1	CYB_1258	-	prolipoprotein diacylglyceryl transferase
1231	 57.26	0	1315983..1316333	+	116	86608735	-	CYB_1260	-	hypothetical protein
1232	 57.12	0	1316313..1317548	-	411	86608736	-	CYB_1259	-	ISSoc1, transposase
1233	 60.55	0	1317828..1319036	+	402	86608737	-	CYB_1261	-	coenzyme F420 hydrogenase/dehydrogenase family protein
1234	 63.58	+1	1319040..1320236	-	398	86608738	-	CYB_1262	-	aspartate aminotransferase
1235	 61.09	0	1320403..1321782	+	459	86608739	engA	CYB_1263	-	GTP-binding protein EngA
1236	 59.57	0	1321806..1322270	+	154	86608740	smpB	CYB_1264	-	SsrA-binding protein
1237	 58.21	0	1322410..1323615	+	401	86608741	-	CYB_1265	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.