IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1049	 53.09	-1	1112192..1113082	-	296	86608553	pstA-1	CYB_1075	-	phosphate ABC transporter, permease protein PtsA
1050	 55.01	0	1113089..1114057	-	322	86608554	pstC-1	CYB_1076	-	phosphate ABC transporter, permease protein PstC
1051	 56.27	0	1114091..1115167	-	358	86608555	pstS-1	CYB_1077	-	phosphate ABC transporter, periplasmic phosphate-binding protein
1052	 46.67	-2	1115457..1115576	-	39	86608556	-	CYB_1078	-	hypothetical protein
1053	 56.06	0	1115617..1115748	+	43	86608557	-	CYB_1079	-	hypothetical protein
1054	 55.56	0	1115958..1116407	+	149	86608558	rplI	CYB_1080	-	ribosomal protein L9
1055	 58.90	0	1116586..1118361	+	591	86608559	dnaB	CYB_1081	-	replicative DNA helicase
1056	 59.53	0	1118493..1119389	+	298	86608560	-	CYB_1082	-	universal stress protein
1057	 63.91	+1	1119436..1120269	+	277	86608561	-	CYB_1083	-	circadian phase modifier CpmA-like protein
1058	 57.55	0	1120530..1121417	+	295	86608562	-	CYB_1084	-	TerC family membrane protein
1059	 60.11	0	1121523..1121705	-	60	86608563	-	CYB_1085	-	hypothetical protein
1060	 61.21	0	1121622..1122428	+	268	86608564	mkl	CYB_1086	-	ABC transporter, ATP-binding protein
1061	 59.31	0	1122428..1123651	+	407	86608565	-	CYB_1087	-	mce related protein
1062	 61.47	0	1123828..1125675	+	615	86608566	glmS	CYB_1089	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
1063	 57.08	0	1125636..1126115	-	159	86608567	-	CYB_1088	-	MerR family transcriptional regulator
1064	 56.12	0	1126243..1126479	-	78	86608568	-	CYB_1090	-	ISSoc11, transposase orfB
1065	 54.26	-1	1126685..1127458	-	257	86608569	-	CYB_1091	-	ISSoc11, transposase orfA
1066	 44.71	-2	1127859..1128236	+	125	86608570	-	CYB_1092	-	ISSoc13, transposase orfA
1067	 43.14	-2	1128194..1128601	+	135	86608571	-	CYB_1093	-	ISSoc13, transposase orfB
1068	 55.88	0	1128616..1129227	-	203	86608572	rpsD	CYB_1094	-	30S ribosomal protein S4
1069	 60.16	0	1129404..1130540	-	378	86608573	gmd	CYB_1095	-	GDP-mannose 4,6-dehydratase
1070	 61.68	0	1130673..1132055	-	460	86608574	-	CYB_1096	-	nicotinate phosphoribosyltransferase
1071	 48.23	-2	1132131..1132271	-	46	86608575	-	CYB_1097	-	putative lipoprotein
1072	 61.77	0	1132452..1133432	+	326	86608576	-	CYB_1098	-	hypothetical protein
1073	 65.21	+1	1133482..1134786	+	434	86608577	hisZ	CYB_1100	-	ATP phosphoribosyltransferase regulatory subunit
1074	 63.86	+1	1134770..1135801	-	343	86608578	-	CYB_1099	-	DNA polymerase III subunit delta'
1075	 58.44	0	1135785..1136027	+	80	86608579	-	CYB_1102	-	hypothetical protein
1076	 57.22	0	1135853..1136032	-	59	86608580	-	CYB_1101	-	hypothetical protein
1077	 60.62	0	1136309..1136788	-	159	86608581	-	CYB_1103	-	hypothetical protein
1078	 58.86	0	1136813..1138579	-	588	86608582	-	CYB_1104	-	hypothetical protein
1079	 47.50	-2	1139571..1139810	-	79	86608583	-	CYB_1105	-	putative transposase, truncation
1080	 63.29	+1	1140273..1142549	+	758	86608584	recJ-2	CYB_1106	-	single-stranded-DNA-specific exonuclease RecJ
1081	 61.54	0	1142684..1146001	+	1105	86608585	-	CYB_1107	-	exonuclease SbcC
1082	 59.80	0	1146007..1146399	-	130	86608586	-	CYB_1108	-	hypothetical protein
1083	 57.20	0	1146498..1146761	-	87	86608587	-	CYB_1109	-	hypothetical protein
1084	 55.76	0	1146761..1147090	-	109	86608588	-	CYB_1110	-	hypothetical protein
1085	 65.06	+1	1147123..1148619	-	498	86608589	-	CYB_1111	-	CobN/magnesium chelatase domain-containing protein
1086	 57.59	0	1148655..1149833	-	392	86608590	tal	CYB_1112	-	transaldolase/EF-hand domain-containing protein
1087	 63.21	+1	1150124..1151077	-	317	86608591	-	CYB_1113	-	RluA family pseudouridine synthase
1088	 53.12	-1	1151222..1151317	+	31	86608592	-	CYB_1114	-	hypothetical protein
1089	 62.29	0	1151415..1153880	+	821	86608593	ppsA	CYB_1115	-	phosphoenolpyruvate synthase
1090	 61.88	0	1153962..1155236	+	424	86608594	-	CYB_1116	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1091	 62.05	0	1155328..1156215	-	295	86608595	lipA-1	CYB_1117	-	lipoyl synthase
1092	 52.56	-1	1156169..1156324	+	51	86608596	-	CYB_1118	-	hypothetical protein
1093	 61.37	0	1156391..1158391	+	666	86608597	tkt	CYB_1119	-	transketolase
1094	 59.69	0	1158799..1158927	-	42	86608598	-	CYB_1120	-	hypothetical protein
1095	 58.39	0	1159139..1159597	+	152	86608599	-	CYB_1121	-	hypothetical protein
1096	 48.39	-2	1159652..1159744	+	30	86608600	-	CYB_1122	-	hypothetical protein
1097	 60.43	0	1160015..1160992	+	325	86608601	-	CYB_1123	-	hypothetical protein
1098	 55.21	0	1161074..1161361	-	95	86608602	-	CYB_1124	-	hypothetical protein
1099	 52.10	-1	1161389..1162006	-	205	86608603	-	CYB_1125	-	hypothetical protein
1100	 60.60	0	1162028..1163857	-	609	86608604	proS	CYB_1126	-	prolyl-tRNA synthetase
1101	 62.97	+1	1163984..1167148	-	1054	86608605	infB	CYB_1127	-	translation initiation factor IF-2
1102	 64.65	+1	1167223..1167321	+	32	86608606	-	CYB_1128	-	hypothetical protein
1103	 58.08	0	1167545..1167835	-	96	86608607	-	CYB_1129	-	hypothetical protein
1104	 56.37	0	1167880..1168899	-	339	86608608	-	CYB_1130	-	response regulator
1105	 56.14	0	1168856..1168969	-	37	86608609	-	CYB_1131	-	hypothetical protein
1106	 53.76	-1	1169534..1169626	+	30	86608610	-	CYB_1132	-	hypothetical protein
1107	 55.79	0	1169694..1170557	-	287	86608611	-	CYB_1133	-	HflC/HflK family protein
1108	 57.85	0	1170896..1171462	-	188	86608612	-	CYB_1134	-	hypothetical protein
1109	 58.95	0	1171596..1172774	-	392	86608613	-	CYB_1135	-	arsenite-antimonite transporter ArsAB
1110	 59.65	0	1172963..1173361	+	132	86608614	-	CYB_1136	-	hypothetical protein
1111	 59.86	0	1173715..1174596	-	293	86608615	-	CYB_1137	-	hypothetical protein
1112	 59.33	0	1174615..1175091	-	158	86608616	-	CYB_1138	-	glyoxalase family protein
1113	 63.95	+1	1175391..1176530	+	379	86608617	-	CYB_1139	-	TonB family protein
1114	 53.11	-1	1176691..1177398	-	235	86608618	-	CYB_1140	-	transposase, truncation
1115	 61.42	0	1177669..1178793	+	374	86608619	gcvT	CYB_1141	-	glycine cleavage system aminomethyltransferase T
1116	 58.23	0	1178803..1179762	-	319	86608620	-	CYB_1142	-	RNA polymerase sigma factor
1117	 59.20	0	1180686..1181060	+	124	86608621	-	CYB_1143	-	hypothetical protein
1118	 64.73	+1	1181165..1182199	+	344	86608622	-	CYB_1144	-	pentapeptide repeat-containing protein
1119	 59.89	0	1182311..1184686	+	791	86608623	-	CYB_1145	-	putative phosphoketolase
1120	 64.13	+1	1184835..1185857	+	340	86608624	mraY	CYB_1146	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1121	 59.53	0	1186153..1188744	+	863	86608625	-	CYB_1147	-	glycosy hydrolase family protein
1122	 57.46	0	1189004..1189459	+	151	86608626	-	CYB_1150	-	hypothetical protein
1123	 59.87	0	1189456..1190367	-	303	86608627	-	CYB_1149	-	alpha/beta fold family hydrolase
1124	 54.86	0	1190676..1191869	+	397	86608628	-	CYB_1151	-	ISSoc1, transposase
1125	 60.85	0	1192105..1193532	+	475	86608629	-	CYB_1152	-	folate-biopterin transporter (FBT) family protein
1126	 57.89	0	1193650..1194105	+	151	86608630	-	CYB_1153	-	hypothetical protein
1127	 57.64	0	1194257..1195009	-	250	86608631	scpA	CYB_1154	-	segregation and condensation protein A
1128	 53.85	-1	1195446..1195601	-	51	86608632	-	CYB_1156	-	hypothetical protein
1129	 57.79	0	1195470..1195976	+	168	86608633	-	CYB_1157	-	hypothetical protein
1130	 58.64	0	1195964..1196860	+	298	86608634	-	CYB_1158	-	hypothetical protein
1131	 60.92	0	1197014..1198162	-	382	86608635	-	CYB_1159	-	hypothetical protein
1132	 57.66	0	1198195..1198971	-	258	86608636	-	CYB_1160	-	enoyl-(acyl carrier protein) reductase
1133	 61.41	0	1199191..1200996	-	601	86608637	aspS	CYB_1161	-	aspartyl-tRNA synthetase
1134	 61.26	0	1201069..1201974	-	301	86608638	-	CYB_1162	-	cation ABC transporter, cation-binding protein
1135	 64.57	+1	1202091..1202852	+	253	86608639	-	CYB_1163	-	manganese/zinc/iron chelate ABC transporter ATP-binding protein
1136	 60.55	0	1202877..1203710	+	277	86608640	-	CYB_1164	-	manganese/zinc/iron chelate ABC transporter permease
1137	 56.14	0	1203779..1204063	-	94	86608641	-	CYB_1165	-	putative RNA-binding protein
1138	 62.07	0	1204260..1205042	-	260	86608642	gidB	CYB_1166	-	glucose-inhibited division protein B
1139	 58.18	0	1205039..1206028	-	329	86608643	-	CYB_1167	-	hypothetical protein
1140	 58.78	0	1206389..1207999	+	536	86608644	guaA	CYB_1168	-	bifunctional GMP synthase/glutamine amidotransferase protein
1141	 56.31	0	1208045..1208266	-	73	86608645	-	CYB_1169	-	hypothetical protein
1142	 53.07	-1	1208269..1208577	-	102	86608646	-	CYB_1170	-	hypothetical protein
1143	 55.00	0	1208687..1209706	-	339	86608647	-	CYB_1171	-	putative cobalamin biosynthesis protein CobW
1144	 59.65	0	1210125..1211165	-	346	86608648	-	CYB_1172	-	hypothetical protein
1145	 59.38	0	1211146..1211790	-	214	86608649	-	CYB_1173	-	hypothetical protein
1146	 52.46	-1	1212203..1212730	+	175	86608650	-	CYB_1174	-	FHA domain-containing protein
1147	 56.32	0	1212761..1213504	+	247	86608651	-	CYB_1175	-	hypothetical protein
1148	 57.73	0	1213522..1214304	+	260	86608652	-	CYB_1176	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.