IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1019	 59.09	0	1085269..1085532	-	87	86608523	-	CYB_1043	-	nuclease
1020	 62.86	+1	1085681..1086127	+	148	86608524	-	CYB_1046	-	hypothetical protein
1021	 59.65	0	1085983..1086096	-	37	86608525	-	CYB_1045	-	hypothetical protein
1022	 50.72	-1	1086266..1086748	+	160	86608526	-	CYB_1047	-	hypothetical protein
1023	 61.35	0	1087213..1087833	+	206	86608527	-	CYB_1048	-	BioY family protein
1024	 56.12	0	1088232..1089179	-	315	86608528	gshB	CYB_1049	-	glutathione synthetase
1025	 57.97	0	1089414..1090160	+	248	86608529	-	CYB_1050	-	pentapeptide repeat-containing protein
1026	 56.54	0	1090200..1090436	-	78	86608530	rpmB	CYB_1051	-	50S ribosomal protein L28
1027	 54.82	0	1090461..1090823	-	120	86608531	-	CYB_1052	-	hypothetical protein
1028	 60.00	0	1090989..1092098	+	369	86608532	-	CYB_1054	-	dockerin repeat-containing protein
1029	 57.20	0	1092095..1093351	-	418	86608533	-	CYB_1053	-	putative transposase
1030	 61.01	0	1093775..1094923	+	382	86608534	-	CYB_1055	-	hypothetical protein
1031	 58.41	0	1095279..1095896	+	205	86608535	-	CYB_1056	-	HD domain-containing protein
1032	 54.79	0	1095967..1096404	+	145	86608536	-	CYB_1057	-	anti-oxidant AhpCTSA family protein
1033	 60.39	0	1096453..1097280	+	275	86608537	-	CYB_1058	-	D-alanyl-D-alanine carboxypeptidase
1034	 58.91	0	1097611..1099053	+	480	86608538	zds	CYB_1060	-	carotene 7,8-desaturase
1035	 58.29	0	1099406..1099978	+	190	86608539	-	CYB_1061	-	hypothetical protein
1036	 56.89	0	1100018..1100590	+	190	86608540	-	CYB_1062	-	hypothetical protein
1037	 61.93	0	1100688..1102058	-	456	86608541	-	CYB_1063	-	cytosine deaminase
1038	 55.45	0	1102133..1102462	-	109	86608542	-	CYB_1064	-	hypothetical protein
1039	 59.35	0	1102633..1103001	-	122	86608543	-	CYB_1065	-	hypothetical protein
1040	 57.47	0	1103050..1104822	-	590	86608544	-	CYB_1066	-	hypothetical protein
1041	 57.26	0	1104958..1106244	-	428	86608545	glgC	CYB_1067	-	glucose-1-phosphate adenylyltransferase
1042	 60.41	0	1106376..1107158	+	260	86608546	-	CYB_1068	-	putative chromosome partitioning protein ParA
1043	 53.83	-1	1107299..1107664	+	121	86608547	-	CYB_1069	-	hypothetical protein
1044	 58.77	0	1107831..1109021	+	396	86608548	sat	CYB_1070	-	sulfate adenylyltransferase
1045	 51.64	-1	1109359..1109571	-	70	86608549	-	CYB_1071	-	hypothetical protein
1046	 54.23	-1	1109890..1110315	-	141	86608550	-	CYB_1072	-	TPR domain-containing protein
1047	 59.90	0	1110359..1111186	-	275	86608551	-	CYB_1073	-	hemolysin A
1048	 54.95	0	1111282..1112109	-	275	86608552	pstB-1	CYB_1074	-	phosphate ABC transporter, ATP-binding protein
1049	 53.09	-1	1112192..1113082	-	296	86608553	pstA-1	CYB_1075	-	phosphate ABC transporter, permease protein PtsA
1050	 55.01	0	1113089..1114057	-	322	86608554	pstC-1	CYB_1076	-	phosphate ABC transporter, permease protein PstC
1051	 56.27	0	1114091..1115167	-	358	86608555	pstS-1	CYB_1077	-	phosphate ABC transporter, periplasmic phosphate-binding protein
1052	 46.67	-2	1115457..1115576	-	39	86608556	-	CYB_1078	-	hypothetical protein
1053	 56.06	0	1115617..1115748	+	43	86608557	-	CYB_1079	-	hypothetical protein
1054	 55.56	0	1115958..1116407	+	149	86608558	rplI	CYB_1080	-	ribosomal protein L9
1055	 58.90	0	1116586..1118361	+	591	86608559	dnaB	CYB_1081	-	replicative DNA helicase
1056	 59.53	0	1118493..1119389	+	298	86608560	-	CYB_1082	-	universal stress protein
1057	 63.91	+1	1119436..1120269	+	277	86608561	-	CYB_1083	-	circadian phase modifier CpmA-like protein
1058	 57.55	0	1120530..1121417	+	295	86608562	-	CYB_1084	-	TerC family membrane protein
1059	 60.11	0	1121523..1121705	-	60	86608563	-	CYB_1085	-	hypothetical protein
1060	 61.21	0	1121622..1122428	+	268	86608564	mkl	CYB_1086	-	ABC transporter, ATP-binding protein
1061	 59.31	0	1122428..1123651	+	407	86608565	-	CYB_1087	-	mce related protein
1062	 61.47	0	1123828..1125675	+	615	86608566	glmS	CYB_1089	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
1063	 57.08	0	1125636..1126115	-	159	86608567	-	CYB_1088	-	MerR family transcriptional regulator
1064	 56.12	0	1126243..1126479	-	78	86608568	-	CYB_1090	-	ISSoc11, transposase orfB
1065	 54.26	-1	1126685..1127458	-	257	86608569	-	CYB_1091	-	ISSoc11, transposase orfA
1066	 44.71	-2	1127859..1128236	+	125	86608570	-	CYB_1092	-	ISSoc13, transposase orfA
1067	 43.14	-2	1128194..1128601	+	135	86608571	-	CYB_1093	-	ISSoc13, transposase orfB
1068	 55.88	0	1128616..1129227	-	203	86608572	rpsD	CYB_1094	-	30S ribosomal protein S4
1069	 60.16	0	1129404..1130540	-	378	86608573	gmd	CYB_1095	-	GDP-mannose 4,6-dehydratase
1070	 61.68	0	1130673..1132055	-	460	86608574	-	CYB_1096	-	nicotinate phosphoribosyltransferase
1071	 48.23	-2	1132131..1132271	-	46	86608575	-	CYB_1097	-	putative lipoprotein
1072	 61.77	0	1132452..1133432	+	326	86608576	-	CYB_1098	-	hypothetical protein
1073	 65.21	+1	1133482..1134786	+	434	86608577	hisZ	CYB_1100	-	ATP phosphoribosyltransferase regulatory subunit
1074	 63.86	+1	1134770..1135801	-	343	86608578	-	CYB_1099	-	DNA polymerase III subunit delta'
1075	 58.44	0	1135785..1136027	+	80	86608579	-	CYB_1102	-	hypothetical protein
1076	 57.22	0	1135853..1136032	-	59	86608580	-	CYB_1101	-	hypothetical protein
1077	 60.62	0	1136309..1136788	-	159	86608581	-	CYB_1103	-	hypothetical protein
1078	 58.86	0	1136813..1138579	-	588	86608582	-	CYB_1104	-	hypothetical protein
1079	 47.50	-2	1139571..1139810	-	79	86608583	-	CYB_1105	-	putative transposase, truncation
1080	 63.29	+1	1140273..1142549	+	758	86608584	recJ-2	CYB_1106	-	single-stranded-DNA-specific exonuclease RecJ
1081	 61.54	0	1142684..1146001	+	1105	86608585	-	CYB_1107	-	exonuclease SbcC
1082	 59.80	0	1146007..1146399	-	130	86608586	-	CYB_1108	-	hypothetical protein
1083	 57.20	0	1146498..1146761	-	87	86608587	-	CYB_1109	-	hypothetical protein
1084	 55.76	0	1146761..1147090	-	109	86608588	-	CYB_1110	-	hypothetical protein
1085	 65.06	+1	1147123..1148619	-	498	86608589	-	CYB_1111	-	CobN/magnesium chelatase domain-containing protein
1086	 57.59	0	1148655..1149833	-	392	86608590	tal	CYB_1112	-	transaldolase/EF-hand domain-containing protein
1087	 63.21	+1	1150124..1151077	-	317	86608591	-	CYB_1113	-	RluA family pseudouridine synthase
1088	 53.12	-1	1151222..1151317	+	31	86608592	-	CYB_1114	-	hypothetical protein
1089	 62.29	0	1151415..1153880	+	821	86608593	ppsA	CYB_1115	-	phosphoenolpyruvate synthase
1090	 61.88	0	1153962..1155236	+	424	86608594	-	CYB_1116	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1091	 62.05	0	1155328..1156215	-	295	86608595	lipA-1	CYB_1117	-	lipoyl synthase
1092	 52.56	-1	1156169..1156324	+	51	86608596	-	CYB_1118	-	hypothetical protein
1093	 61.37	0	1156391..1158391	+	666	86608597	tkt	CYB_1119	-	transketolase
1094	 59.69	0	1158799..1158927	-	42	86608598	-	CYB_1120	-	hypothetical protein
1095	 58.39	0	1159139..1159597	+	152	86608599	-	CYB_1121	-	hypothetical protein
1096	 48.39	-2	1159652..1159744	+	30	86608600	-	CYB_1122	-	hypothetical protein
1097	 60.43	0	1160015..1160992	+	325	86608601	-	CYB_1123	-	hypothetical protein
1098	 55.21	0	1161074..1161361	-	95	86608602	-	CYB_1124	-	hypothetical protein
1099	 52.10	-1	1161389..1162006	-	205	86608603	-	CYB_1125	-	hypothetical protein
1100	 60.60	0	1162028..1163857	-	609	86608604	proS	CYB_1126	-	prolyl-tRNA synthetase
1101	 62.97	+1	1163984..1167148	-	1054	86608605	infB	CYB_1127	-	translation initiation factor IF-2
1102	 64.65	+1	1167223..1167321	+	32	86608606	-	CYB_1128	-	hypothetical protein
1103	 58.08	0	1167545..1167835	-	96	86608607	-	CYB_1129	-	hypothetical protein
1104	 56.37	0	1167880..1168899	-	339	86608608	-	CYB_1130	-	response regulator
1105	 56.14	0	1168856..1168969	-	37	86608609	-	CYB_1131	-	hypothetical protein
1106	 53.76	-1	1169534..1169626	+	30	86608610	-	CYB_1132	-	hypothetical protein
1107	 55.79	0	1169694..1170557	-	287	86608611	-	CYB_1133	-	HflC/HflK family protein
1108	 57.85	0	1170896..1171462	-	188	86608612	-	CYB_1134	-	hypothetical protein
1109	 58.95	0	1171596..1172774	-	392	86608613	-	CYB_1135	-	arsenite-antimonite transporter ArsAB
1110	 59.65	0	1172963..1173361	+	132	86608614	-	CYB_1136	-	hypothetical protein
1111	 59.86	0	1173715..1174596	-	293	86608615	-	CYB_1137	-	hypothetical protein
1112	 59.33	0	1174615..1175091	-	158	86608616	-	CYB_1138	-	glyoxalase family protein
1113	 63.95	+1	1175391..1176530	+	379	86608617	-	CYB_1139	-	TonB family protein
1114	 53.11	-1	1176691..1177398	-	235	86608618	-	CYB_1140	-	transposase, truncation
1115	 61.42	0	1177669..1178793	+	374	86608619	gcvT	CYB_1141	-	glycine cleavage system aminomethyltransferase T
1116	 58.23	0	1178803..1179762	-	319	86608620	-	CYB_1142	-	RNA polymerase sigma factor
1117	 59.20	0	1180686..1181060	+	124	86608621	-	CYB_1143	-	hypothetical protein
1118	 64.73	+1	1181165..1182199	+	344	86608622	-	CYB_1144	-	pentapeptide repeat-containing protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.