IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
968	 62.34	0	1028658..1030022	+	454	86608472	-	CYB_0993	-	hypothetical protein
969	 61.00	0	1030047..1031633	-	528	86608473	-	CYB_0994	-	hypothetical protein
970	 48.68	-2	1031709..1032803	-	364	86608474	-	CYB_0995	-	hypothetical protein
971	 59.37	0	1033030..1034934	+	634	86608475	-	CYB_0996	-	penicillin-binding protein
972	 55.31	0	1035046..1036269	-	407	86608476	-	CYB_0997	-	glycosyl transferase, group 2
973	 62.13	0	1036444..1038936	-	830	86608477	-	CYB_0998	-	HDIG domain-containing protein
974	 56.06	0	1039003..1039398	-	131	86608478	-	CYB_0999	-	hypothetical protein
975	 61.48	0	1039634..1040269	-	211	86608479	-	CYB_1000	-	4'-phosphopantetheinyl transferase family protein
976	 61.63	0	1040370..1041839	+	489	86608480	-	CYB_1001	-	putative cell envelope-related function transcriptional attenuator
977	 52.63	-1	1041947..1043806	+	619	86608481	htpG	CYB_1003	-	heat shock protein 90
978	 59.83	0	1043800..1044384	-	194	86608482	ribH	CYB_1002	-	riboflavin synthase subunit beta
979	 48.06	-2	1044645..1044773	+	42	86608483	-	CYB_1004	-	hypothetical protein
980	 57.43	0	1044770..1046068	+	432	86608484	glnA-1	CYB_1005	-	glutamine synthetase
981	 61.59	0	1046132..1046998	-	288	86608485	aroE	CYB_1006	-	shikimate 5-dehydrogenase
982	 55.16	0	1047061..1047564	-	167	86608486	-	CYB_1007	-	hypothetical protein
983	 58.85	0	1047612..1048967	-	451	86608487	-	CYB_1008	-	response regulator
984	 62.25	0	1049217..1049963	-	248	86608488	-	CYB_1009	-	putative outer membrane protein
985	 55.72	0	1050250..1050450	+	66	86608489	-	CYB_1010	-	hypothetical protein
986	 58.33	0	1050509..1050784	+	91	86608490	-	CYB_1011	-	hypothetical protein
987	 61.33	0	1050866..1052176	+	436	86608491	hemL	CYB_1012	-	glutamate-1-semialdehyde aminotransferase
988	 55.97	0	1052215..1052457	+	80	86608492	-	CYB_1014	-	hypothetical protein
989	 58.74	0	1052454..1053854	-	466	86608493	chlN	CYB_1013	-	light-independent protochlorophyllide reductase subunit N
990	 58.18	0	1053896..1054873	-	325	86608494	-	CYB_1015	-	protochlorophyllide oxidoreductase
991	 59.27	0	1055032..1055883	-	283	86608495	chlL	CYB_1016	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
992	 63.17	+1	1056240..1057526	-	428	86608496	-	CYB_1017	-	resolvase family site-specific recombinase
993	 61.75	0	1057548..1058462	-	304	86608497	murQ	CYB_1018	-	N-acetylmuramic acid-6-phosphate etherase
994	 58.24	0	1058438..1058698	-	86	86608498	-	CYB_1019	-	hypothetical protein
995	 60.19	0	1058903..1060246	+	447	86608499	-	CYB_1020	-	phosphoglycerate mutase family protein
996	 64.37	+1	1060249..1061595	+	448	86608500	-	CYB_1021	-	dihydroorotase
997	 59.74	0	1061684..1064512	-	942	86608501	ileS	CYB_1022	-	isoleucyl-tRNA synthetase
998	 54.44	0	1064976..1066169	-	397	86608502	-	CYB_1023	-	ISSoc1, transposase
999	 61.75	0	1066521..1067435	-	304	86608503	-	CYB_1024	-	hypothetical protein
1000	 58.40	0	1067556..1067930	+	124	86608504	-	CYB_1025	-	rhodanese domain-containing protein
1001	 61.56	0	1068088..1069890	+	600	86608505	-	CYB_1026	-	M24B family peptidase
1002	 59.87	0	1069918..1070976	-	352	86608506	-	CYB_1027	-	radical SAM protein
1003	 54.79	0	1071393..1072049	+	218	86608507	-	CYB_1028	-	hypothetical protein
1004	 59.08	0	1072024..1072998	+	324	86608508	-	CYB_1029	-	YihY family protein
1005	 64.56	+1	1073024..1074115	+	363	86608509	-	CYB_1030	-	Sua5/YciO/YrdC/YwlC family protein
1006	 59.63	0	1074130..1074669	+	179	86608510	purE	CYB_1031	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1007	 62.71	+1	1074736..1075494	+	252	86608511	-	CYB_1032	-	hypothetical protein
1008	 59.03	0	1075819..1076499	+	226	86608512	-	CYB_1033	-	hypothetical protein
1009	 53.52	-1	1076533..1077627	-	364	86608513	-	CYB_1034	-	hypothetical protein
1010	 59.05	0	1077433..1077537	+	34	86608514	-	CYB_1035	-	hypothetical protein
1011	 46.37	-2	1077777..1078727	-	316	86608515	-	CYB_1036	-	hypothetical protein
1012	 52.76	-1	1078724..1079557	-	277	86608516	-	CYB_1037	-	hypothetical protein
1013	 61.01	0	1079568..1080521	-	317	86608517	-	CYB_1038	-	L-asparaginase, thermolabile
1014	 61.76	0	1080664..1081458	+	264	86608518	-	CYB_1039	-	cbiX protein
1015	 62.58	+1	1081523..1082305	+	260	86608519	cobA	CYB_1040	-	uroporphyrin-III C-methyltransferase
1016	 60.58	0	1082302..1083090	+	262	86608520	-	CYB_1041	-	hypothetical protein
1017	 55.56	0	1083185..1084426	+	413	86608521	-	CYB_1042	-	ISSoc1, transposase
1018	 58.41	0	1084594..1085283	+	229	86608522	-	CYB_1044	-	LuxR family DNA-binding response regulator
1019	 59.09	0	1085269..1085532	-	87	86608523	-	CYB_1043	-	nuclease
1020	 62.86	+1	1085681..1086127	+	148	86608524	-	CYB_1046	-	hypothetical protein
1021	 59.65	0	1085983..1086096	-	37	86608525	-	CYB_1045	-	hypothetical protein
1022	 50.72	-1	1086266..1086748	+	160	86608526	-	CYB_1047	-	hypothetical protein
1023	 61.35	0	1087213..1087833	+	206	86608527	-	CYB_1048	-	BioY family protein
1024	 56.12	0	1088232..1089179	-	315	86608528	gshB	CYB_1049	-	glutathione synthetase
1025	 57.97	0	1089414..1090160	+	248	86608529	-	CYB_1050	-	pentapeptide repeat-containing protein
1026	 56.54	0	1090200..1090436	-	78	86608530	rpmB	CYB_1051	-	50S ribosomal protein L28
1027	 54.82	0	1090461..1090823	-	120	86608531	-	CYB_1052	-	hypothetical protein
1028	 60.00	0	1090989..1092098	+	369	86608532	-	CYB_1054	-	dockerin repeat-containing protein
1029	 57.20	0	1092095..1093351	-	418	86608533	-	CYB_1053	-	putative transposase
1030	 61.01	0	1093775..1094923	+	382	86608534	-	CYB_1055	-	hypothetical protein
1031	 58.41	0	1095279..1095896	+	205	86608535	-	CYB_1056	-	HD domain-containing protein
1032	 54.79	0	1095967..1096404	+	145	86608536	-	CYB_1057	-	anti-oxidant AhpCTSA family protein
1033	 60.39	0	1096453..1097280	+	275	86608537	-	CYB_1058	-	D-alanyl-D-alanine carboxypeptidase
1034	 58.91	0	1097611..1099053	+	480	86608538	zds	CYB_1060	-	carotene 7,8-desaturase
1035	 58.29	0	1099406..1099978	+	190	86608539	-	CYB_1061	-	hypothetical protein
1036	 56.89	0	1100018..1100590	+	190	86608540	-	CYB_1062	-	hypothetical protein
1037	 61.93	0	1100688..1102058	-	456	86608541	-	CYB_1063	-	cytosine deaminase
1038	 55.45	0	1102133..1102462	-	109	86608542	-	CYB_1064	-	hypothetical protein
1039	 59.35	0	1102633..1103001	-	122	86608543	-	CYB_1065	-	hypothetical protein
1040	 57.47	0	1103050..1104822	-	590	86608544	-	CYB_1066	-	hypothetical protein
1041	 57.26	0	1104958..1106244	-	428	86608545	glgC	CYB_1067	-	glucose-1-phosphate adenylyltransferase
1042	 60.41	0	1106376..1107158	+	260	86608546	-	CYB_1068	-	putative chromosome partitioning protein ParA
1043	 53.83	-1	1107299..1107664	+	121	86608547	-	CYB_1069	-	hypothetical protein
1044	 58.77	0	1107831..1109021	+	396	86608548	sat	CYB_1070	-	sulfate adenylyltransferase
1045	 51.64	-1	1109359..1109571	-	70	86608549	-	CYB_1071	-	hypothetical protein
1046	 54.23	-1	1109890..1110315	-	141	86608550	-	CYB_1072	-	TPR domain-containing protein
1047	 59.90	0	1110359..1111186	-	275	86608551	-	CYB_1073	-	hemolysin A
1048	 54.95	0	1111282..1112109	-	275	86608552	pstB-1	CYB_1074	-	phosphate ABC transporter, ATP-binding protein
1049	 53.09	-1	1112192..1113082	-	296	86608553	pstA-1	CYB_1075	-	phosphate ABC transporter, permease protein PtsA
1050	 55.01	0	1113089..1114057	-	322	86608554	pstC-1	CYB_1076	-	phosphate ABC transporter, permease protein PstC
1051	 56.27	0	1114091..1115167	-	358	86608555	pstS-1	CYB_1077	-	phosphate ABC transporter, periplasmic phosphate-binding protein
1052	 46.67	-2	1115457..1115576	-	39	86608556	-	CYB_1078	-	hypothetical protein
1053	 56.06	0	1115617..1115748	+	43	86608557	-	CYB_1079	-	hypothetical protein
1054	 55.56	0	1115958..1116407	+	149	86608558	rplI	CYB_1080	-	ribosomal protein L9
1055	 58.90	0	1116586..1118361	+	591	86608559	dnaB	CYB_1081	-	replicative DNA helicase
1056	 59.53	0	1118493..1119389	+	298	86608560	-	CYB_1082	-	universal stress protein
1057	 63.91	+1	1119436..1120269	+	277	86608561	-	CYB_1083	-	circadian phase modifier CpmA-like protein
1058	 57.55	0	1120530..1121417	+	295	86608562	-	CYB_1084	-	TerC family membrane protein
1059	 60.11	0	1121523..1121705	-	60	86608563	-	CYB_1085	-	hypothetical protein
1060	 61.21	0	1121622..1122428	+	268	86608564	mkl	CYB_1086	-	ABC transporter, ATP-binding protein
1061	 59.31	0	1122428..1123651	+	407	86608565	-	CYB_1087	-	mce related protein
1062	 61.47	0	1123828..1125675	+	615	86608566	glmS	CYB_1089	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
1063	 57.08	0	1125636..1126115	-	159	86608567	-	CYB_1088	-	MerR family transcriptional regulator
1064	 56.12	0	1126243..1126479	-	78	86608568	-	CYB_1090	-	ISSoc11, transposase orfB
1065	 54.26	-1	1126685..1127458	-	257	86608569	-	CYB_1091	-	ISSoc11, transposase orfA
1066	 44.71	-2	1127859..1128236	+	125	86608570	-	CYB_1092	-	ISSoc13, transposase orfA
1067	 43.14	-2	1128194..1128601	+	135	86608571	-	CYB_1093	-	ISSoc13, transposase orfB
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.