IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-3-3Ab



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.19 STD DEV: 4.44
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766
2760 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
876	 61.96	0	924902..926623	+	573	86605618	-	CYA_0916	-	sensor histidine kinase
877	 65.36	+1	926631..927470	+	279	86605619	ksgA	CYA_0917	-	dimethyladenosine transferase
878	 62.70	0	927519..928223	+	234	86605620	fabG	CYA_0918	-	3-ketoacyl-(acyl-carrier-protein) reductase
879	 59.11	0	928298..929104	+	268	86605621	sppA-1	CYA_0919	-	signal peptide peptidase SppA, 36K type
880	 63.44	0	929252..930337	-	361	86605622	-	CYA_0920	-	hypothetical protein
881	 57.02	0	931016..931129	-	37	86605623	-	CYA_0921	-	hypothetical protein
882	 62.36	0	931131..931571	-	146	86605624	-	CYA_0922	-	hypothetical protein
883	 64.72	+1	932014..933912	+	632	86605625	-	CYA_0923	-	monovalent cation:proton antiporter-2 (CPA2) family protein
884	 63.52	0	933940..935304	-	454	86605626	-	CYA_0924	-	FG-GAP repeat- ASPIC/UnbV domain-containing protein
885	 57.43	0	935393..935695	+	100	86605627	rpsT	CYA_0925	-	30S ribosomal protein S20
886	 60.98	0	936772..937035	+	87	86605628	-	CYA_0926	-	nuclease
887	 59.38	0	937057..937728	-	223	86605629	-	CYA_0927	-	LuxR family DNA-binding response regulator
888	 59.82	0	937912..938700	-	262	86605630	-	CYA_0928	-	hypothetical protein
889	 63.11	0	938697..939455	-	252	86605631	cobA	CYA_0929	-	uroporphyrin-III C-methyltransferase
890	 63.22	0	939523..940422	-	299	86605632	-	CYA_0930	-	CbiX family protein
891	 64.05	0	940421..941374	+	317	86605633	-	CYA_0931	-	L-asparaginase, thermolabile
892	 52.76	-1	941582..942214	+	210	86605634	-	CYA_0932	-	hypothetical protein
893	 53.91	-1	943317..944390	+	357	86605635	-	CYA_0933	-	hypothetical protein
894	 60.74	0	944702..945376	-	224	86605636	-	CYA_0934	-	hypothetical protein
895	 56.10	0	945552..946043	-	163	86605637	-	CYA_0935	-	nucleotide-binding protein
896	 60.74	0	946162..947004	+	280	86605638	-	CYA_0936	-	short chain dehydrogenase/reductase family oxidoreductase
897	 57.85	0	947117..947479	+	120	86605639	-	CYA_0938	-	FHA domain-containing protein
898	 64.80	+1	947476..948816	-	446	86605640	-	CYA_0937	-	polysaccharide biosynthesis domain-containing protein
899	 65.71	+1	948786..950765	+	659	86605641	-	CYA_0939	-	penicillin-binding protein
900	 56.60	0	951098..951415	+	105	86605642	hup-2	CYA_0940	-	DNA-binding protein HU
901	 64.49	0	951486..952631	+	381	86605643	cobD-2	CYA_0941	-	threonine-phosphate decarboxylase
902	 64.86	+1	952658..953323	+	221	86605644	-	CYA_0942	-	hypothetical protein
903	 58.68	0	953467..954468	+	333	86605645	-	CYA_0943	-	hypothetical protein
904	 58.12	0	954669..955745	-	358	86605646	-	CYA_0944	-	putative secreted protein
905	 62.99	0	955764..956606	+	280	86605647	nadC	CYA_0945	-	nicotinate-nucleotide pyrophosphorylase
906	 60.45	0	956763..957695	+	310	86605648	nadA	CYA_0946	-	quinolinate synthetase
907	 64.96	+1	957733..959253	+	506	86605649	nadB	CYA_0948	-	L-aspartate oxidase
908	 62.20	0	959250..960659	-	469	86605650	gnd	CYA_0947	-	6-phosphogluconate dehydrogenase, decarboxylating
909	 66.87	+1	960752..961249	-	165	86605651	-	CYA_0949	-	pentapeptide repeat-containing protein
910	 64.66	+1	961326..962519	+	397	86605652	-	CYA_0950	-	hypothetical protein
911	 56.94	0	962731..964725	+	664	86605653	-	CYA_0951	-	peroxisomal fatty acyl CoA ABC transporter transmembrane ATP-binding protein
912	 61.78	0	964842..966620	+	592	86605654	sir	CYA_0952	-	sulfite reductase subunit beta
913	 58.59	0	966736..967527	+	263	86605655	-	CYA_0953	-	TPR repeat-containing protein
914	 57.39	0	967595..967939	-	114	86605656	-	CYA_0954	-	anti-anti-sigma factor family protein
915	 64.73	+1	968098..969234	+	378	86605657	-	CYA_0955	-	glycosyl transferase, group 2
916	 47.11	-2	969244..970194	-	316	86605658	-	CYA_0956	-	D12 class N6 adenine-specific DNA methyltransferase
917	 49.72	-2	970268..970444	-	58	86605659	-	CYA_0957	-	hypothetical protein
918	 51.52	-1	970713..970877	-	54	86605660	-	CYA_0958	-	hypothetical protein
919	 53.16	-1	971755..972450	+	231	86605661	-	CYA_0959	-	glutamine amidotransferase, class I
920	 64.11	0	972527..973936	+	469	86605662	murD	CYA_0960	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
921	 61.58	0	973845..975005	+	386	86605663	-	CYA_0961	-	putative cell division protein FtsW
922	 56.18	0	975020..975553	-	177	86605664	-	CYA_0962	-	hypothetical protein
923	 63.17	0	976929..977528	+	199	86605665	-	CYA_0965	-	hypothetical protein
924	 64.71	+1	977468..978337	-	289	86605666	-	CYA_0964	-	alpha/beta fold family hydrolase
925	 59.31	0	978380..979045	-	221	86605667	-	CYA_0966	-	Crp/FNR family transcriptional regulator
926	 62.69	0	979418..980197	+	259	86605668	surE-2	CYA_0967	-	acid phosphatase SurE
927	 60.39	0	980254..980715	-	153	86605669	-	CYA_0968	-	hypothetical protein
928	 62.52	0	980722..981372	-	216	86605670	hisH	CYA_0969	-	imidazole glycerol phosphate synthase subunit HisH
929	 56.86	0	982540..983253	-	237	86605671	grpE	CYA_0971	-	co-chaperone GrpE
930	 64.50	0	983430..985091	-	553	86605672	-	CYA_0972	-	putative 2`,3`-cyclic-nucleotide 2`-phosphodiesterase
931	 60.93	0	985155..986375	-	406	86605673	-	CYA_0973	-	hypothetical protein
932	 66.45	+1	986439..987371	-	310	86605674	-	CYA_0974	-	hypothetical protein
933	 64.12	0	987514..989007	-	497	86605675	-	CYA_0975	-	putative S-layer protein
934	 63.30	0	989224..990264	-	346	86605676	tas	CYA_0976	-	aldo/keto reductase Tas
935	 56.21	0	990346..992028	-	560	86605677	-	CYA_0977	-	hypothetical protein
936	 58.13	0	992523..993647	+	374	86605678	-	CYA_0978	-	response regulator
937	 60.00	0	993659..993928	-	89	86605679	-	CYA_0979	-	BolA/YrbA family protein
938	 55.03	-1	994257..995468	-	403	86605680	-	CYA_0981	-	ISSoc1, transposase
939	 65.66	+1	995539..996033	-	164	86605681	-	CYA_0982	-	hypothetical protein
940	 62.85	0	996509..997660	-	383	86605682	-	CYA_0983	-	carboxylesterase
941	 62.19	0	997798..998757	+	319	86605683	-	CYA_0984	-	LysR family transcriptional regulator
942	 61.58	0	998871..999911	+	346	86605684	-	CYA_0985	-	hypothetical protein
943	 62.55	0	1000284..1001570	-	428	86605685	-	CYA_0986	-	Rho termination factor domain-containing protein
944	 58.33	0	1001623..1001730	-	35	86605686	-	CYA_0987	-	hypothetical protein
945	 63.88	0	1001745..1002821	+	358	86605687	-	CYA_0989	-	hypothetical protein
946	 63.75	0	1001774..1002013	-	79	86605688	-	CYA_0988	-	hypothetical protein
947	 62.47	0	1002934..1004052	+	372	86605689	-	CYA_0990	-	heptosyltransferase family protein
948	 61.61	0	1004332..1005240	+	302	86605690	-	CYA_0991	-	hypothetical protein
949	 66.22	+1	1005261..1006382	-	373	86605691	-	CYA_0992	-	alcohol dehydrogenase, iron-containing
950	 59.87	0	1006632..1007750	+	372	86605692	pilM	CYA_0993	-	type 4 fimbrial biogenesis protein PilM
951	 57.59	0	1007814..1008518	+	234	86605693	pilN	CYA_0994	-	type 4 fimbrial biogenesis protein PilN
952	 58.51	0	1008518..1009240	+	240	86605694	-	CYA_0995	-	hypothetical protein
953	 50.78	-2	1009528..1011699	+	723	86605695	-	CYA_0996	-	putative type IV pilus secretin PilQ
954	 51.90	-1	1011746..1012510	+	254	86605696	-	CYA_0997	-	hypothetical protein
955	 45.50	-2	1012515..1013081	-	188	86605697	-	CYA_0998	-	ISSoc4, transposase orfB
956	 46.87	-2	1013063..1013461	-	132	86605698	-	CYA_0999	-	ISSoc4, transposase orfA
957	 57.64	0	1013568..1013966	+	132	86605699	-	CYA_1000	-	hypothetical protein
958	 59.61	0	1014352..1014918	-	188	86605700	-	CYA_1001	-	hypothetical protein
959	 63.02	0	1015046..1016581	+	511	86605701	-	CYA_1002	-	Orn/Lys/Arg decarboxylase
960	 60.32	0	1016586..1018019	-	477	86605702	-	CYA_1003	-	HlyC/CorC (HCC) family transporter
961	 50.70	-2	1018222..1018578	-	118	86605703	-	CYA_1004	-	peptidase propeptide/YPEB domain-containing protein
962	 60.26	0	1018844..1019764	+	306	86605704	ilvE	CYA_1005	-	branched-chain amino acid aminotransferase
963	 58.48	0	1019842..1020354	+	170	86605705	-	CYA_1006	-	putative purine phosphoribosyltransferase
964	 51.06	-2	1020398..1024249	-	1283	86605706	-	CYA_1007	-	FkbM family methyltransferase
965	 46.27	-2	1025028..1025978	-	316	86605707	-	CYA_1008	-	hypothetical protein
966	 49.71	-2	1025994..1026683	-	229	86605708	-	CYA_1009	-	2OG-Fe(II) oxygenase family oxidoreductase
967	 58.97	0	1027337..1027531	-	64	86605709	-	CYA_1010	-	hypothetical protein
968	 54.04	-1	1027704..1029731	+	675	86605710	-	CYA_1011	-	FkbM family methyltransferase
969	 47.25	-2	1029768..1032461	+	897	86605711	-	CYA_1012	-	macrocin-O-methyltransferase domain-containing protein
970	 57.30	0	1032528..1033253	-	241	86605712	-	CYA_1013	-	hypothetical protein
971	 61.92	0	1034023..1035054	-	343	86605713	lpxD	CYA_1015	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
972	 60.89	0	1035070..1035588	-	172	86605714	-	CYA_1016	-	hypothetical protein
973	 59.51	0	1036398..1037417	+	339	86605715	-	CYA_1019	-	hypothetical protein
974	 54.17	-1	1037440..1038135	+	231	86605716	-	CYA_1020	-	hypothetical protein
975	 56.26	0	1038333..1041368	+	1011	86605717	-	CYA_1021	-	hypothetical protein
60.19	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.